View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4792-Insertion-2 (Length: 880)
Name: NF4792-Insertion-2
Description: NF4792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4792-Insertion-2 |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 385; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 424 - 880
Target Start/End: Original strand, 42423315 - 42423772
Alignment:
| Q |
424 |
acaatttctaagtaaatatgnnnnnnncttaaatattttttctatgatttcgtcgcatgagttcaacattatttttgtgatgtatggtttagttgtctat |
523 |
Q |
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| T |
42423315 |
acaatttctaagtaaatatgtttttttcttaaatattttttctatgatttcgtcgcatgagttcaacattatttttgtgatgtatggtttagttgtctat |
42423414 |
T |
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| Q |
524 |
cttgttaaagtgggcagtttagttttgatccattacacaacaaattcaatcaatgacataatggttaaatccagaagcacgtgtatttcaatcaaaacaa |
623 |
Q |
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| T |
42423415 |
cttgttaaagtgggcagtttagtttcgatccattacactacaaattcaatcaatgacataatcgttaaatccagaagcacgtgtatttcaatcaaaacaa |
42423514 |
T |
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| Q |
624 |
tattattatgtatgttctagctcaattaacaatatttgtgtacttaactcaactaacaatgtcaatatttatagaccgaacatcttaatccatattcaac |
723 |
Q |
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| T |
42423515 |
tattattatgtatgttctagctcaattaacaatattcatgcacttaactcaactaacaatgtcaacatttatagaccaaacatcttaattcatattcaac |
42423614 |
T |
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| Q |
724 |
actcaatatctcgctgtcaagtaacgtgtaaattttagttgatatttatcacttcaaaataaacaatattaaagcaaatattgaaaaagaaggatctaaa |
823 |
Q |
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| T |
42423615 |
acttaatatctcgctgtcaagtaacgtgtaaattttagttgatatttatcacttcaaaataaacaatattaaagcaaatattgaaaaagaaggatctaaa |
42423714 |
T |
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| Q |
824 |
ttatttttgtgaacgggtaaatatttaatatagaa-atgataaatatttttgttatag |
880 |
Q |
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| T |
42423715 |
ttatttttgtgaacgggtaaatatttaatatataatatgataaatatttttgttatag |
42423772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 262; E-Value: 1e-145
Query Start/End: Original strand, 80 - 403
Target Start/End: Original strand, 42422999 - 42423323
Alignment:
| Q |
80 |
aaacaactcaaaatcatgtttataaaaacaccaatttcttgtttatagaaacatatcatattcgaatatgaaatctacaataatgatnnnnnnnnn-tat |
178 |
Q |
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| T |
42422999 |
aaacaactcaaaatcatgtttataaaaacaccaatttcttgtttatagaaacatatcattttagaatatgaaatctacaataatgataaaaaaaaaatgt |
42423098 |
T |
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| Q |
179 |
aagaaatcaaaatcacactacaaactcgggaattttgaaagaaactaacaaggtttgaattgttgagaagtttcatttctataacattgtagaaatctga |
278 |
Q |
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| T |
42423099 |
aagaaatcaaaatcacactacaaactcgggaattttgaaagaaactaacaaggtttgaattgttgagaagtttcatttctataacattgtagaaatctga |
42423198 |
T |
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| Q |
279 |
gagcagaggaagagaatgaagaacacaacacataacaatgaaatctacgagagtggtttatgtccttttttccttcgaaattatccattatttcctccct |
378 |
Q |
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| T |
42423199 |
gagcagaggaagagattgaagaacacgacacataacaatgaaatctacgagagtggtttatgtccttttttccttcgaaattatccattatttcctgcct |
42423298 |
T |
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| Q |
379 |
attttcatttaaacagacaatttct |
403 |
Q |
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| T |
42423299 |
attttcatttaaacaaacaatttct |
42423323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 42421480 - 42421594
Alignment:
| Q |
9 |
catcaaattgaattgaaatgcaattcaaaatcaaatccatcgaaacacgtagatattgcaaataaatatagaaacaactcaaaatcatgtttataaaaac |
108 |
Q |
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| T |
42421480 |
catcaaattgaattgaaatgcagttcaaaatcaaattcatcgaatcacatagatattgcaaataaatatagaaacaattcaaaattttgtttatagaaac |
42421579 |
T |
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| Q |
109 |
accaatttcttgttt |
123 |
Q |
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| T |
42421580 |
acttatttcttgttt |
42421594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 42422949 - 42422995
Alignment:
| Q |
9 |
catcaaattgaattgaaatgcaattcaaaatcaaatccatcgaaaca |
55 |
Q |
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| T |
42422949 |
catcaaattgaattgaaatgcaattcaaaatcaaatccatcgaaaca |
42422995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 126
Target Start/End: Original strand, 42421335 - 42421414
Alignment:
| Q |
47 |
atcgaaacacgtagatattgcaaataaatatagaaacaactcaaaatcatgtttataaaaacaccaatttcttgtttata |
126 |
Q |
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| T |
42421335 |
atcgaaacacatatatattgcaaataaatatagaaacagttgaaactcgtgtttatgaaaacaccaattacttgtttata |
42421414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 42422811 - 42422845
Alignment:
| Q |
17 |
tgaattgaaatgcaattcaaaatcaaatccatcga |
51 |
Q |
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| T |
42422811 |
tgaattgaaatgcaattcaaaatcaaattcatcga |
42422845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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