View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4792-Insertion-3 (Length: 707)

Name: NF4792-Insertion-3
Description: NF4792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4792-Insertion-3
NF4792-Insertion-3
[»] chr1 (13 HSPs)
chr1 (8-282)||(32850381-32850655)
chr1 (332-529)||(32850134-32850331)
chr1 (332-533)||(32850037-32850239)
chr1 (332-489)||(32849988-32850146)
chr1 (369-529)||(32850227-32850387)
chr1 (387-529)||(32847671-32847813)
chr1 (332-460)||(32847647-32847776)
chr1 (610-706)||(32847681-32847776)
chr1 (610-707)||(32850050-32850146)
chr1 (610-707)||(32850143-32850239)
chr1 (610-673)||(32849990-32850053)
chr1 (484-533)||(32847760-32847809)
chr1 (610-707)||(32850236-32850331)
[»] chr7 (2 HSPs)
chr7 (413-459)||(22159566-22159612)
chr7 (413-459)||(22218274-22218320)
[»] chr3 (1 HSPs)
chr3 (413-456)||(38305974-38306018)


Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-131; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 8 - 282
Target Start/End: Complemental strand, 32850655 - 32850381
Alignment:
Q  8 agaccgtggttccaatctcgttgttatcaacccaggtatgcnnnnnnntccaattttgcgcattacccattttttatcttatgctcttttaatcatttta 107  Q
    |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32850655 agaccgtggttccaatctcgttgttatcaacccaggtatgcaaaaaaatccaattttgcgcattacccattttttatcttatgctcttttaatcatttta 32850556  T
Q  108 gctctaagtttaaataaaatcaacattatgtacttaaaaatggtgactttatgttattttctcaggttctgcaaatatcagaattggatcggcttcacaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  32850555 gctctaagtttaaataaaatcaacattatgtacttaaaaatggtgactttatgttattttctcaggttctgcaaacatcagaattggattggcttcacaa 32850456  T
Q  208 gataccccttataatatccctcattgcattgcccattataccaaacaagttcctaagaagaatgttcaagatcag 282  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  32850455 gataccccttataatatccctcattgcattgctcattataccaaacaagttcctaagaagaacgttcaagatcag 32850381  T

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Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 332 - 529
Target Start/End: Complemental strand, 32850331 - 32850134
Alignment:
Q  332 gttcctgcaattatagcatttttggttttagtccctgagatcaggttttgaattattttatttcgttaatttatggttttgatatgattttagttcctgc 431  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32850331 gttcctgcaattatagcatttttggttttagtccctgagatcaggttttgaattattttatttcgttaatttatggttttgatatgattttagttcctgc 32850232  T
Q  432 aattatagtgtttttggttttagtccctgagatcaggtttttgaattatttgatttcgttaatttatggttttaatatgattttagttcctgcaatta 529  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  32850231 aattatagtgtttttggttttagtccctgagatcaggtttttgaattatttgatttcgttaatttatggttttgatatgattttagttcctgcaatta 32850134  T

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Target: chr1; HSP #3
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 332 - 533
Target Start/End: Complemental strand, 32850239 - 32850037
Alignment:
Q  332 gttcctgcaattatagcatttttggttttagtccctgagatcaggtttt-gaattattttatttcgttaatttatggttttgatatgattttagttcctg 430  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  32850239 gttcctgcaattatagtgtttttggttttagtccctgagatcaggtttttgaattatttgatttcgttaatttatggttttgatatgattttagttcctg 32850140  T
Q  431 caattatagtgtttttggttttagtccctgagatcaggtttttgaattatttgatttcgttaatttatggttttaatatgattttagttcctgcaattac 530  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  32850139 caattatagtgtttttggttttagtccctgagatcaggtttttgaattattttatttcgttaatttatggttttaatatgattttagttcctgcaattac 32850040  T
Q  531 agt 533  Q
    |||    
T  32850039 agt 32850037  T

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Target: chr1; HSP #4
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 332 - 489
Target Start/End: Complemental strand, 32850146 - 32849988
Alignment:
Q  332 gttcctgcaattatagcatttttggttttagtccctgagatcaggtttt-gaattattttatttcgttaatttatggttttgatatgattttagttcctg 430  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  32850146 gttcctgcaattatagtgtttttggttttagtccctgagatcaggtttttgaattattttatttcgttaatttatggttttaatatgattttagttcctg 32850047  T
Q  431 caattatagtgtttttggttttagtccctgagatcaggtttttgaattatttgatttcg 489  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  32850046 caattacagtgtttttggttttagtccctgagagcaggtttttgaattattttatttcg 32849988  T

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Target: chr1; HSP #5
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 369 - 529
Target Start/End: Complemental strand, 32850387 - 32850227
Alignment:
Q  369 agatcaggtttt-gaattattttatttcgttaatttatggttttgatatgattttagttcctgcaattatagtgtttttggttttagtccctgagatcag 467  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  32850387 agatcaggtttttgaattattttatttcgttagtttatggttttgatatgattttagttcctgcaattatagcatttttggttttagtccctgagatcag 32850288  T
Q  468 gtttttgaattatttgatttcgttaatttatggttttaatatgattttagttcctgcaatta 529  Q
    | ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  32850287 g-ttttgaattattttatttcgttaatttatggttttgatatgattttagttcctgcaatta 32850227  T

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Target: chr1; HSP #6
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 387 - 529
Target Start/End: Complemental strand, 32847813 - 32847671
Alignment:
Q  387 ttttatttcgttaatttatggttttgatatgattttagttcctgcaattatagtgtttttggttttagtccctgagatcaggtttttgaattatttgatt 486  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||    
T  32847813 ttttatttcgttaatttatggttttaatatgattttagttcctgcaattacagtgtttttggttttagtccctgagatcaggtttttgaattattttatt 32847714  T
Q  487 tcgttaatttatggttttaatatgattttagttcctgcaatta 529  Q
    |||| |||||||||||||||||||||||||||| |||||||||    
T  32847713 tcgtgaatttatggttttaatatgattttagttactgcaatta 32847671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 332 - 460
Target Start/End: Complemental strand, 32847776 - 32847647
Alignment:
Q  332 gttcctgcaattatagcatttttggttttagtccctgagatcaggtttt-gaattattttatttcgttaatttatggttttgatatgattttagttcctg 430  Q
    ||||||||||||| ||  ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||| |||    
T  32847776 gttcctgcaattacagtgtttttggttttagtccctgagatcaggtttttgaattattttatttcgtgaatttatggttttaatatgattttagttactg 32847677  T
Q  431 caattatagtgtttttggttttagtccctg 460  Q
    |||||||||||| |||||||||||||||||    
T  32847676 caattatagtgtgtttggttttagtccctg 32847647  T

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Target: chr1; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 610 - 706
Target Start/End: Complemental strand, 32847776 - 32847681
Alignment:
Q  610 gttcctgcaattacagtgtttttggttttagtccctgagatcaggtttttgaattagtttattttgtcaatttatgggttgaaatatgattttagtt 706  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||| ||||  |||||||||||||||    
T  32847776 gttcctgcaattacagtgtttttggttttagtccctgagatcaggtttttgaattattttatttcgtgaatttat-ggttttaatatgattttagtt 32847681  T

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Target: chr1; HSP #9
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 610 - 707
Target Start/End: Complemental strand, 32850146 - 32850050
Alignment:
Q  610 gttcctgcaattacagtgtttttggttttagtccctgagatcaggtttttgaattagtttattttgtcaatttatgggttgaaatatgattttagttc 707  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||| ||||  ||||||||||||||||    
T  32850146 gttcctgcaattatagtgtttttggttttagtccctgagatcaggtttttgaattattttatttcgttaatttat-ggttttaatatgattttagttc 32850050  T

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Target: chr1; HSP #10
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 610 - 707
Target Start/End: Complemental strand, 32850239 - 32850143
Alignment:
Q  610 gttcctgcaattacagtgtttttggttttagtccctgagatcaggtttttgaattagtttattttgtcaatttatgggttgaaatatgattttagttc 707  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||| || ||||||| ||||   |||||||||||||||    
T  32850239 gttcctgcaattatagtgtttttggttttagtccctgagatcaggtttttgaattatttgatttcgttaatttat-ggttttgatatgattttagttc 32850143  T

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Target: chr1; HSP #11
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 610 - 673
Target Start/End: Complemental strand, 32850053 - 32849990
Alignment:
Q  610 gttcctgcaattacagtgtttttggttttagtccctgagatcaggtttttgaattagtttattt 673  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  32850053 gttcctgcaattacagtgtttttggttttagtccctgagagcaggtttttgaattattttattt 32849990  T

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Target: chr1; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 484 - 533
Target Start/End: Complemental strand, 32847809 - 32847760
Alignment:
Q  484 atttcgttaatttatggttttaatatgattttagttcctgcaattacagt 533  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32847809 atttcgttaatttatggttttaatatgattttagttcctgcaattacagt 32847760  T

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Target: chr1; HSP #13
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 610 - 707
Target Start/End: Complemental strand, 32850331 - 32850236
Alignment:
Q  610 gttcctgcaattacagtgtttttggttttagtccctgagatcaggtttttgaattagtttattttgtcaatttatgggttgaaatatgattttagttc 707  Q
    ||||||||||||| ||  ||||||||||||||||||||||||||| |||||||||| ||||||| || ||||||| ||||   |||||||||||||||    
T  32850331 gttcctgcaattatagcatttttggttttagtccctgagatcagg-ttttgaattattttatttcgttaatttat-ggttttgatatgattttagttc 32850236  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 413 - 459
Target Start/End: Complemental strand, 22159612 - 22159566
Alignment:
Q  413 atatgattttagttcctgcaattatagtgtttttggttttagtccct 459  Q
    |||||| |||||| ||| |||||||||||||||||||||||||||||    
T  22159612 atatgactttagtccctacaattatagtgtttttggttttagtccct 22159566  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 413 - 459
Target Start/End: Complemental strand, 22218320 - 22218274
Alignment:
Q  413 atatgattttagttcctgcaattatagtgtttttggttttagtccct 459  Q
    |||||| |||||| ||| |||||||||||||||||||||||||||||    
T  22218320 atatgactttagtccctacaattatagtgtttttggttttagtccct 22218274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 413 - 456
Target Start/End: Complemental strand, 38306018 - 38305974
Alignment:
Q  413 atatgattttagttcctgcaattatagtgt-ttttggttttagtc 456  Q
    ||||||||||||| | |||||||||||||| ||||||||||||||    
T  38306018 atatgattttagtccttgcaattatagtgttttttggttttagtc 38305974  T

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