View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4792_high_2 (Length: 244)
Name: NF4792_high_2
Description: NF4792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4792_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 46263189 - 46263417
Alignment:
| Q |
1 |
tcttttttgtcttttaggaaccaacatttatttgataatctccacaagaaaagaagagttacatatgtaaaggaaaagaatacacttatattaggtatta |
100 |
Q |
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| T |
46263189 |
tcttttttgtcttttaggaaccaacattcatttgataatcaccacaagaaaagaagagttacatatgtaaaggaaaagaatacacttatattaggtatta |
46263288 |
T |
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| Q |
101 |
aatcacgaacaacgtcgcagcacaatctttgatataatggattactgataatatgaccataatcttgcccagattgcagtcctgaagtcgtgaagacatc |
200 |
Q |
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| T |
46263289 |
aatcacgaacaacgtcgcagcacaatctttgatataatggattactgataatatgaccataatcttgcccagattgcagtcctgaagtcgtgaagacatc |
46263388 |
T |
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| Q |
201 |
aaaaaagattaatgttgcagtcgtttgtg |
229 |
Q |
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| T |
46263389 |
aagaaagattaatgttgcagtcgtttgtg |
46263417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 46025002 - 46024771
Alignment:
| Q |
1 |
tcttttttgtcttttaggaaccaacatttatttgataatctccacaagaaaagaagagttacatatgtaaaggaaaagaatacacttatattaggtatta |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
46025002 |
tcttttttgtcttttaggaaccaacattcatttgataatcaccacaagaaaagaagagttacatatgtaaaggaaaagaatacacttgtattaggtatta |
46024903 |
T |
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| Q |
101 |
aatcacgaacaacgtcgcagcacaatctttgatata---atggattactgataatatgaccataatcttgcccagattgcagtcctgaagtcgtgaagac |
197 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46024902 |
aatcacgaacaacgtcgcagcacaatctttgatataatgatggattactgataatatgaccataatcttgcccagattgcagtcctgaagtcgtgaagac |
46024803 |
T |
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| Q |
198 |
atcaaaaaagattaatgttgcagtcgtttgtg |
229 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
46024802 |
atcaaaaaagattaatgttgcagtcgtttgtg |
46024771 |
T |
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Back To:
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