View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4792_low_2 (Length: 276)
Name: NF4792_low_2
Description: NF4792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4792_low_2 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 10 - 276
Target Start/End: Original strand, 31629344 - 31629602
Alignment:
| Q |
10 |
acatcatcactactaatattcttcaataaaaattgtatcatttcaagatattacaaattgaagttactttagtgaaattacatatgtttgatttctgtct |
109 |
Q |
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| T |
31629344 |
acatcatcactactaattttcttcaataaaaattgtatcatttcaagatattacaaattgaagttactttagtgaaattacatatgtttgatttctgtct |
31629443 |
T |
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| Q |
110 |
ttgctttcaagcctcactttgactaggagtcatccaaagtaacttctatattggattgacaattttacaccgactttacttcaaacttcccttgagaatg |
209 |
Q |
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| T |
31629444 |
ttgctttcaagcctcactttgac--------atccaaagtaacttctatattggattgacaattttacaccgactttacttcaaacttcccttgagaatg |
31629535 |
T |
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| Q |
210 |
agattgtctaaatataaatcacttatttcaaaatcgattataaccaaatgaattatgttccaaatca |
276 |
Q |
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| T |
31629536 |
agattgtctaaatataaatcacttatttcaaaatcgattataaccaaatgaattatgtcccaaatca |
31629602 |
T |
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