View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4793-Insertion-11 (Length: 640)
Name: NF4793-Insertion-11
Description: NF4793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4793-Insertion-11 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 563; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 7 - 640
Target Start/End: Original strand, 15688810 - 15689441
Alignment:
| Q |
7 |
actcaacagatgagaaattgtctttggctttttgggatattgtacagtgatgtctttgtctctccaattttaaaataagccaaaaaagaatgatctaaac |
106 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15688810 |
actcaacagaggagatattgtctttggctttttgggatattgtacagtgatgtctttgtctctccaattttaaaataagccaaaaaagaatgatctaaac |
15688909 |
T |
|
| Q |
107 |
tgtaacaagaattaggtagtagtggactagaagtattggtgaattagattatgggaaataaaatattaaatctagtgcaggccatgactgctaaataaca |
206 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
15688910 |
tgtaacaggaattaggtagtagtgaactagaagtattggtcaattagattatgggaaataaaattttaaatctagtgcaggccatgactgctaaataaca |
15689009 |
T |
|
| Q |
207 |
taaaataatctatattcatcaataatctatttctaaaaatagtgtctgatattgataaccatgttatcggtcgataaaacaggcatatttactgtctcaa |
306 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
15689010 |
taaaataatctattttcatcaataatctatttctaaaaatagtggccgatattgataaccatgttatcggtcgataaaacaggcatattgactgtctcaa |
15689109 |
T |
|
| Q |
307 |
ttggtattaggagcctttaatctagtgcaggccatgactgctaaatacaaaccaaagaaaacgtctcaattggtatcaggagcctttaatctagtgccat |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15689110 |
ttggtattaggagcctttaatctagtgcaggccatgactgctaaatacaaactgaagaaaacgtctcaattggtatcaggagcctttaatctagtgccat |
15689209 |
T |
|
| Q |
407 |
gactgctaaatacaaaccgaagtaaattttgagtgttatgggagttgactaaaagatggaaatgagtttatgcttcctatgtgatgaacctcttacttta |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15689210 |
gactgctaaatacaaaccgaagtaaattttgagtgttatgggagttgagtaaaagatggaaatgagtttatgcttcctatgtgatgaacctcttacttta |
15689309 |
T |
|
| Q |
507 |
gatcattttcaattaaagcataagaatattaaaatagcaatgagggatattgattaaagcataagagtgttatggaaaattttcttgtaccgaatccatt |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
15689310 |
gatcattttcaattaaagcataagaatattaaaatagcaatgagggatattgattaaagcata--agtgttatggaaaattttcttgtactgaatccatt |
15689407 |
T |
|
| Q |
607 |
aatcaacatctctcctgaaacccatgaataggat |
640 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |
|
|
| T |
15689408 |
aatcaacatctctcttgaaacccatgaataggat |
15689441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 457 - 560
Target Start/End: Complemental strand, 55286936 - 55286831
Alignment:
| Q |
457 |
aaaagatggaaatgagtttatgcttcctatgtgatgaacctcttactttagatcattttcaat--taaagcataagaatattaaaatagcaatgagggat |
554 |
Q |
| |
|
|||| |||||||||||| |||| ||| |||||||||| ||||||||||| |||||||||||| |||||||||||||| |||| |||| || ||||||| |
|
|
| T |
55286936 |
aaaaaatggaaatgagtgtatgtttcttatgtgatgagcctcttactttgaatcattttcaattataaagcataagaatgttaagatagtaacgagggat |
55286837 |
T |
|
| Q |
555 |
attgat |
560 |
Q |
| |
|
|||||| |
|
|
| T |
55286836 |
attgat |
55286831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 459 - 503
Target Start/End: Complemental strand, 30896914 - 30896870
Alignment:
| Q |
459 |
aagatggaaatgagtttatgcttcctatgtgatgaacctcttact |
503 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||| ||||| |
|
|
| T |
30896914 |
aagatggaaatgagtttatgtttcttatgtgatgaaccttttact |
30896870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University