View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4793-Insertion-12 (Length: 547)
Name: NF4793-Insertion-12
Description: NF4793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4793-Insertion-12 |
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Alignment Details
Target: chr8 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 22 - 519
Target Start/End: Complemental strand, 45178596 - 45178084
Alignment:
| Q |
22 |
tctatttattttgagaaatgaagaggatatttattcacaatggcggaatcctacaaattagcactctatatcttatcctannnnnnngaattgatttaaa |
121 |
Q |
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| T |
45178596 |
tctatttattttgagaaatgaagaggatactcattcgcaatggcggaaccctacaaattagcactttatatcttgtcttatttttttgaattgatttaaa |
45178497 |
T |
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| Q |
122 |
ataggaaagatgaattttacaattgttttgatatgtctgtttttattcattt----gtgtaacacaatatacatttttcttaaaatcatctttcctatgt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45178496 |
ataggaaagatgaattttacaattgttttgatatgtctgtttttatttatttatttgtgtaacacaatatacatttttcttaaaatcatctttcctatgt |
45178397 |
T |
|
| Q |
218 |
acattcaaattcctactcaattaaatacatttctatctagtttgtgttgactgtattcttcttgtaatagcaggaggcaattatagaggccactgacgac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
45178396 |
acattcaaattcctactcaattaaatacatttctatctagtttgtgttgactgtattcttcttgtaatagcaggaggcaattatagaggccaatgacgac |
45178297 |
T |
|
| Q |
318 |
acaacaaatagattgacagataaatttttccagttgttttgtttgtggtag-aagctaacttataattccttgtcacaaactgtcattttgcattagtgc |
416 |
Q |
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| T |
45178296 |
acaacaaatagattgacagataaatttttccagttgttttgtttgtggtagaaagctaacttataattccttgtcacaaactgtcattttgtattagtgc |
45178197 |
T |
|
| Q |
417 |
cgtagttctgcattgggaggtatttttgagcgtaccgaaacgcattga---------tattattattatgaaacaaagatgaacagtcgcggca-tttcc |
506 |
Q |
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| T |
45178196 |
cgtagttctgcattaggaggtatttttgagcgtaccgaaacgcattgatattattattattattattatgaaacaaggatgaacagtcacggcattttcc |
45178097 |
T |
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| Q |
507 |
ttttccccctttg |
519 |
Q |
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| T |
45178096 |
ttttccccctttg |
45178084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 340
Target Start/End: Complemental strand, 45171487 - 45171387
Alignment:
| Q |
240 |
aaatacatttctatctagtttgtgttgactgtattcttcttgtaatagcaggaggcaattatagaggccactgacgacacaacaaatagattgacagata |
339 |
Q |
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|||| ||||||| || ||||||| ||||| |||||||| ||||| ||||||||| | ||||||||| || ||||||| || || || ||||||||||| |
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| T |
45171487 |
aaatgcatttctgtccagtttgttttgacggtattctttttgtattagcaggagcctgttatagaggtcaatgacgacgcagcagatgaattgacagata |
45171388 |
T |
|
| Q |
340 |
a |
340 |
Q |
| |
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| T |
45171387 |
a |
45171387 |
T |
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