View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4793-Insertion-13 (Length: 546)

Name: NF4793-Insertion-13
Description: NF4793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4793-Insertion-13
NF4793-Insertion-13
[»] chr4 (4 HSPs)
chr4 (274-546)||(10074208-10074479)
chr4 (8-123)||(10073872-10074002)
chr4 (444-538)||(10082882-10082976)
chr4 (118-158)||(10074051-10074091)


Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 274 - 546
Target Start/End: Original strand, 10074208 - 10074479
Alignment:
Q  274 tgtcaacatataggatgacgaacacttaacacttaaaaatgaaaacttgatnnnnnnnnnccacttgatacttaacagagacttcgaaacaaaaaatctt 373  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| |         ||||||||||||||||||| ||||||||||||||||||||    
T  10074208 tgtcaaaatataggatgacgaacacttaacacttaaaaatgaaaacttg-ttaaaaaaaaccacttgatacttaacagatacttcgaaacaaaaaatctt 10074306  T
Q  374 cattgacgaccaaataaatccgcgacataatcttgatttcagtaataggagagaacaaaattcaactcaataattcacactgctgcaatattttcttatc 473  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10074307 cattgacgaccaaataaatccgcgacataatcttgatttcagtaataggagagaacaaaattcaactcaataattcacacggctgcaatattttcttatc 10074406  T
Q  474 tgaccctggtttccggttagagggctaagatttcccatcttaatcatcgcgttggcaaaatcgaagctgaaga 546  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||    
T  10074407 tgaccctggtctccagttagagggctaagatttcccatcttaatcatcgcgttagcaaagtcgatgctgaaga 10074479  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 10073872 - 10074002
Alignment:
Q  8 ccatactcttgcaaatgtggtcacgtccttaactatgtactcaaaatatca--------------ttacaagcctctttctat-aaaaaagataggtgat 92  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||              |||||||||||||||||| ||||||||||||||||    
T  10073872 ccatactcttgcaaatgtggtcacgtccttaactatgtactcaaaatatcattatgaatgaaccgttacaagcctctttctataaaaaaagataggtgat 10073971  T
Q  93 aaaaaacggataaattaggggaacatataat 123  Q
    |||||| ||||||||||||||||||||||||    
T  10073972 aaaaaatggataaattaggggaacatataat 10074002  T

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Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 444 - 538
Target Start/End: Original strand, 10082882 - 10082976
Alignment:
Q  444 taattcacactgctgcaatattttcttatctgaccctggtttccggttagagggctaagatttcccatcttaatcatcgcgttggcaaaatcgaa 538  Q
    |||||||| ||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||| || || ||||||||    
T  10082882 taattcactctgctgcaatattttctgatctgaccctggtttccagtaagagggctaagatttcccatcttaatcatcgccttagcgaaatcgaa 10082976  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 158
Target Start/End: Original strand, 10074051 - 10074091
Alignment:
Q  118 tataataaactgaaagaacaaggcatatatattaccaattg 158  Q
    |||| |||||||||||||||||||||||||| |||||||||    
T  10074051 tatattaaactgaaagaacaaggcatatataataccaattg 10074091  T

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