View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4793-Insertion-17 (Length: 465)

Name: NF4793-Insertion-17
Description: NF4793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4793-Insertion-17
NF4793-Insertion-17
[»] chr8 (6 HSPs)
chr8 (363-465)||(31330235-31330339)
chr8 (8-75)||(31329885-31329952)
chr8 (8-57)||(31322079-31322128)
chr8 (233-284)||(15021387-15021438)
chr8 (198-284)||(31330072-31330166)
chr8 (231-271)||(12493445-12493485)
[»] chr7 (1 HSPs)
chr7 (226-284)||(26453914-26453972)
[»] chr4 (8 HSPs)
chr4 (226-284)||(38609082-38609140)
chr4 (237-284)||(28777332-28777379)
chr4 (234-284)||(47089204-47089254)
chr4 (249-281)||(2905510-2905542)
chr4 (232-284)||(47750459-47750511)
chr4 (216-281)||(20922667-20922732)
chr4 (216-284)||(7633203-7633270)
chr4 (244-284)||(32056332-32056372)
[»] chr2 (2 HSPs)
chr2 (204-284)||(35470332-35470412)
chr2 (203-284)||(29108797-29108878)
[»] scaffold0603 (1 HSPs)
scaffold0603 (216-284)||(6936-7004)
[»] chr5 (4 HSPs)
chr5 (237-284)||(8955246-8955293)
chr5 (244-284)||(4049604-4049644)
chr5 (208-284)||(5091751-5091827)
chr5 (232-284)||(22732006-22732058)
[»] chr3 (2 HSPs)
chr3 (239-284)||(28430316-28430361)
chr3 (244-284)||(32497852-32497892)
[»] chr1 (1 HSPs)
chr1 (231-284)||(31647624-31647677)


Alignment Details
Target: chr8 (Bit Score: 74; Significance: 9e-34; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 363 - 465
Target Start/End: Original strand, 31330235 - 31330339
Alignment:
Q  363 aactacttaactaatgcctcagggacgctggttaacatgacctta--tttaaataagctaaactattccaccaaaactagtaccagaaagaatcaaactt 460  Q
    |||||||||||||||||||||| ||||||||||||||||||||||  ||| ||||||||||||||||||| ||||| || ||||||||||||||||||||    
T  31330235 aactacttaactaatgcctcagagacgctggttaacatgaccttattttttaataagctaaactattccatcaaaattaataccagaaagaatcaaactt 31330334  T
Q  461 gagaa 465  Q
    |||||    
T  31330335 gagaa 31330339  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 31329885 - 31329952
Alignment:
Q  8 atatccgccaacatgattcttcatttacgtattgatagagcaaataattgtgtcatagttatcccctc 75  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  31329885 atatccgccaacacgattcttcatttacatattgatagagcaaataattgtgtcatagttatcccctc 31329952  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 31322079 - 31322128
Alignment:
Q  8 atatccgccaacatgattcttcatttacgtattgatagagcaaataattg 57  Q
    ||||||||| |||||||||||||||||| |||| ||||||||||||||||    
T  31322079 atatccgccgacatgattcttcatttacatattaatagagcaaataattg 31322128  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 15021438 - 15021387
Alignment:
Q  233 ggggcactagctaagaaattataaaaggaaatgttttctcgaaaattgtgta 284  Q
    |||||||||| ||| ||||||||| || ||||||||||||||||||||||||    
T  15021438 ggggcactagttaaaaaattataagagaaaatgttttctcgaaaattgtgta 15021387  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 198 - 284
Target Start/End: Original strand, 31330072 - 31330166
Alignment:
Q  198 tattattttttaggaaactgttaaacggtgcctccggggc--------actagctaagaaattataaaaggaaatgttttctcgaaaattgtgta 284  Q
    ||||||||||||||||| |||||||| |||| ||||| ||        ||||| |||| ||||||||||| ||||||||||||| ||||||||||    
T  31330072 tattattttttaggaaaatgttaaacagtgcttccggagctaggagacactagttaaggaattataaaagaaaatgttttctcggaaattgtgta 31330166  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 271
Target Start/End: Complemental strand, 12493485 - 12493445
Alignment:
Q  231 ccggggcactagctaagaaattataaaaggaaatgttttct 271  Q
    |||||||||||| |||| |||||||||| ||||||||||||    
T  12493485 ccggggcactagttaaggaattataaaaagaaatgttttct 12493445  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 226 - 284
Target Start/End: Complemental strand, 26453972 - 26453914
Alignment:
Q  226 tgcctccggggcactagctaagaaattataaaaggaaatgttttctcgaaaattgtgta 284  Q
    |||| |||||||||||| |||| ||||||||||||||||||||| ||||||||||||||    
T  26453972 tgcccccggggcactagttaaggaattataaaaggaaatgttttatcgaaaattgtgta 26453914  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 226 - 284
Target Start/End: Original strand, 38609082 - 38609140
Alignment:
Q  226 tgcctccggggcactagctaagaaattataaaaggaaatgttttctcgaaaattgtgta 284  Q
    |||| |||||||||| | |||| ||||||||||||||||||||||||||||||||||||    
T  38609082 tgcccccggggcactggttaaggaattataaaaggaaatgttttctcgaaaattgtgta 38609140  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 237 - 284
Target Start/End: Original strand, 28777332 - 28777379
Alignment:
Q  237 cactagctaagaaattataaaaggaaatgttttctcgaaaattgtgta 284  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||    
T  28777332 cactagttaagaaattataaaaggaaatgttttctcaaaaattgtgta 28777379  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 47089204 - 47089254
Alignment:
Q  234 gggcactagctaagaaattataaaaggaaatgttttctcgaaaattgtgta 284  Q
    ||||||| | |||| ||||||||||||||||||||||| ||||||||||||    
T  47089204 gggcactggttaaggaattataaaaggaaatgttttcttgaaaattgtgta 47089254  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 249 - 281
Target Start/End: Original strand, 2905510 - 2905542
Alignment:
Q  249 aattataaaaggaaatgttttctcgaaaattgt 281  Q
    |||||||||||||||||||||||||||||||||    
T  2905510 aattataaaaggaaatgttttctcgaaaattgt 2905542  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 232 - 284
Target Start/End: Original strand, 47750459 - 47750511
Alignment:
Q  232 cggggcactagctaagaaattataaaaggaaatgttttctcgaaaattgtgta 284  Q
    ||||||||||| |||| ||||||||| |||||| ||||||| |||||||||||    
T  47750459 cggggcactagttaaggaattataaagggaaatattttctcaaaaattgtgta 47750511  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 281
Target Start/End: Original strand, 20922667 - 20922732
Alignment:
Q  216 tgttaaacggtgcctccggggcactagctaagaaattataaaaggaaatgttttctcgaaaattgt 281  Q
    |||||| |||||||  ||| ||||||| |||| ||||||||||| ||||||||||| | |||||||    
T  20922667 tgttaatcggtgccctcggagcactagttaaggaattataaaagaaaatgttttcttggaaattgt 20922732  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 7633270 - 7633203
Alignment:
Q  216 tgttaaacggtgcctccggggcactagctaagaaattataaaaggaaatgttttctcgaaaattgtgta 284  Q
    |||||| |||||| ||||||| ||| | |||| ||||||||||||||||| ||| | ||||||||||||    
T  7633270 tgttaaccggtgc-tccgggggactggttaaggaattataaaaggaaatgattttttgaaaattgtgta 7633203  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 32056372 - 32056332
Alignment:
Q  244 taagaaattataaaaggaaatgttttctcgaaaattgtgta 284  Q
    ||||||||||||||||||||| || ||| ||||||||||||    
T  32056372 taagaaattataaaaggaaattttgtcttgaaaattgtgta 32056332  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 204 - 284
Target Start/End: Complemental strand, 35470412 - 35470332
Alignment:
Q  204 tttttaggaaactgttaaacggtgcctccggggcactagctaagaaattataaaaggaaatgttttctcgaaaattgtgta 284  Q
    |||||||| || |||||| |||||||||||||||||| | |||| |||||| ||||||||| ||| || ||||||||||||    
T  35470412 tttttagggaaatgttaaccggtgcctccggggcactggttaaggaattattaaaggaaatatttccttgaaaattgtgta 35470332  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 284
Target Start/End: Complemental strand, 29108878 - 29108797
Alignment:
Q  203 ttttttaggaaactgttaaacggtgcctccggggcactagctaagaaattataaaaggaaatgttttctcgaaaattgtgta 284  Q
    ||||| ||| || |||||| ||||||  ||| | |||| | |||| |||||||||||||||| |||||| ||||||||||||    
T  29108878 tttttaagggaaatgttaatcggtgctcccgcgacactggttaaggaattataaaaggaaatattttcttgaaaattgtgta 29108797  T

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Target: scaffold0603 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 284
Target Start/End: Original strand, 6936 - 7004
Alignment:
Q  216 tgttaaacggtgcctccggggcactagctaagaaattataaaaggaaatgttttctcgaaaattgtgta 284  Q
    |||||| |||||  |||||| |||||| |||| |||| |||||||||||| ||||| ||||||||||||    
T  6936 tgttaaccggtgattccgggacactagttaaggaattgtaaaaggaaatgatttcttgaaaattgtgta 7004  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 284
Target Start/End: Complemental strand, 8955293 - 8955246
Alignment:
Q  237 cactagctaagaaattataaaaggaaatgttttctcgaaaattgtgta 284  Q
    |||||| |||||||||||||||  |||| |||||||||||||||||||    
T  8955293 cactagttaagaaattataaaaaaaaatattttctcgaaaattgtgta 8955246  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 4049644 - 4049604
Alignment:
Q  244 taagaaattataaaaggaaatgttttctcgaaaattgtgta 284  Q
    ||||||||||||||||||||||| || ||| ||||||||||    
T  4049644 taagaaattataaaaggaaatgtgttttcggaaattgtgta 4049604  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 284
Target Start/End: Original strand, 5091751 - 5091827
Alignment:
Q  208 taggaaactgttaaacggtgcctccggggcactagctaagaaattataaaaggaaatgttttctcgaaaattgtgta 284  Q
    ||||||| ||||||   ||||| |||||||||| | |||| |||||||||||||||  ||  |||||||||||||||    
T  5091751 taggaaaatgttaacaagtgcccccggggcacttgttaaggaattataaaaggaaaacttacctcgaaaattgtgta 5091827  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 284
Target Start/End: Complemental strand, 22732058 - 22732006
Alignment:
Q  232 cggggcactagctaagaaattataaaaggaaatgttttctcgaaaattgtgta 284  Q
    ||||||||||| |||  ||| |||||||||||| |||||| ||||||||||||    
T  22732058 cggggcactagttaaagaatcataaaaggaaatattttcttgaaaattgtgta 22732006  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 284
Target Start/End: Complemental strand, 28430361 - 28430316
Alignment:
Q  239 ctagctaagaaattataaaaggaaatgttttctcgaaaattgtgta 284  Q
    |||| |||||||||||||||||||||||||| ||  ||||||||||    
T  28430361 ctagttaagaaattataaaaggaaatgttttatctgaaattgtgta 28430316  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 32497892 - 32497852
Alignment:
Q  244 taagaaattataaaaggaaatgttttctcgaaaattgtgta 284  Q
    |||||||||||||||| |||| || ||||||||||||||||    
T  32497892 taagaaattataaaagtaaatattatctcgaaaattgtgta 32497852  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 284
Target Start/End: Original strand, 31647624 - 31647677
Alignment:
Q  231 ccggggcactagctaagaaattataaaaggaaatgttttctcgaaaattgtgta 284  Q
    ||||| |||||| |||| ||||||||||| ||||||||| ||||||||| ||||    
T  31647624 ccgggacactagttaaggaattataaaagaaaatgttttttcgaaaattctgta 31647677  T

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