View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4793-Insertion-18 (Length: 464)
Name: NF4793-Insertion-18
Description: NF4793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4793-Insertion-18 |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 8 - 457
Target Start/End: Complemental strand, 39671779 - 39671337
Alignment:
| Q |
8 |
gatattaggttccacaggattcatcactgaggatattggcttcatcattctgttggtgtgtgtcttgaagtagaccacaagctaacaacaaaacattaaa |
107 |
Q |
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| T |
39671779 |
gatattaggttccacaggattcatcaccgaggatattggcttcatcattctgttggtgtgtgtcttgaagtagaccacaagctaacaacaaaacattaaa |
39671680 |
T |
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| Q |
108 |
ccattcacgtggttgatgttttcactaagtggatgatttcaccaatgactcaaatcatggacctagatcacctgctgtaaatgtttcacgccgttacacg |
207 |
Q |
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| T |
39671679 |
ccattcacgtggttgatgttttcaccaagtggatgatttcaccgatgactcaaatcatggatctagatcacctgctgtaaatgcttcacgcagttacacg |
39671580 |
T |
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| Q |
208 |
cacttaacagctgatctaaaccgtagaagagtgagagtgattcaacagtccgcattgtaggaaacttcttattnnnnnnntttatatacaaaagaggcac |
307 |
Q |
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| T |
39671579 |
catttaatagctgatctgaactttagaaga------gtgattcaacagtccgcattgtaggaaacttgttattaaaaaaatttatatacaaaagaggcac |
39671486 |
T |
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| Q |
308 |
tttcaaaggtgcattgttattccaaataatgtcacaatatgaataatattcaaatatatgatatgttcttgacaccttataagtcctttgacaacgtatt |
407 |
Q |
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| T |
39671485 |
tttcaaaggtgcatttttattccaaataatgtcacaatatgaataatattcaaatatatga-atgttcttgacaccttataagtcctttgacaatgtatt |
39671387 |
T |
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| Q |
408 |
attcactaagaacatttcgtcatgtctatcgattaaatacaatcgcttgc |
457 |
Q |
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| T |
39671386 |
attcactaagaacatttcgtcatgtctatcgatcaaatacaatcgcttgc |
39671337 |
T |
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