View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4793-Insertion-2 (Length: 1001)

Name: NF4793-Insertion-2
Description: NF4793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4793-Insertion-2
NF4793-Insertion-2
[»] chr6 (5 HSPs)
chr6 (15-599)||(15307306-15307895)
chr6 (15-599)||(15312600-15313189)
chr6 (22-597)||(33457748-33458323)
chr6 (22-597)||(34821906-34822481)
chr6 (96-396)||(10740125-10740425)
[»] chr3 (3 HSPs)
chr3 (798-997)||(10545205-10545402)
chr3 (22-597)||(37190185-37190760)
chr3 (157-362)||(19474332-19474537)
[»] chr8 (1 HSPs)
chr8 (22-597)||(2994611-2995186)
[»] scaffold0061 (3 HSPs)
scaffold0061 (118-597)||(22691-23170)
scaffold0061 (118-597)||(13633-14112)
scaffold0061 (490-597)||(69389-69496)
[»] chr2 (2 HSPs)
chr2 (142-296)||(18503068-18503222)
chr2 (490-584)||(26363474-26363568)


Alignment Details
Target: chr6 (Bit Score: 322; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 15 - 599
Target Start/End: Original strand, 15307306 - 15307895
Alignment:
Q  15 catagaaaaattatcatttaaaccagtaagaaacctcatagcatacaacataagatgatttttgcgagcgtttctcatggcttcacatacacattgatgc 114  Q
    |||||| ||||| ||||| |||||| | ||||||||||||||||| | || ||||||||| || | |||  ||||||||| |||||||||||| |||||     
T  15307306 catagagaaattttcattcaaaccattgagaaacctcatagcatatagcaaaagatgattctttctagcagttctcatggattcacatacacactgatgt 15307405  T
Q  115 ctgcaactacaactaggtataggaatatagatctctaattcttcccacaaaatcttcaattctgaataaaag-----gtggtaactgacttggattcttg 209  Q
    |||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||      || |||||| |||||||||||||    
T  15307406 ctgcaactgcaactaggtataggaatataaatctctaactcttcccacaaaatcttcaattctgaaaaaaaaaatatgtagtaactaacttggattcttg 15307505  T
Q  210 ctgtaacgcataaatctcttgcattaactctgaaattcgaaccaaatctccgtgagaaatgcgttctttgagatcattccacacatccatggcattatcc 309  Q
     ||||||||||||||||||||||| || |||||||| ||||||||| | || |||||||  |||||||||||||||||||||||||||||||| || |||    
T  15307506 ttgtaacgcataaatctcttgcatcaattctgaaatacgaaccaaaccaccttgagaaaaacgttctttgagatcattccacacatccatggcgttttcc 15307605  T
Q  310 atgaagatgatggactgagaaattgaaggagaaaccgaattcaggatccatgaaagtattaacatattgcaacgattccaagaacgataagttggatcaa 409  Q
    ||||||||||||||||||||||||||||| |||||  |||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  15307606 atgaagatgatggactgagaaattgaaggggaaacataattcaagatccatgaaagtattaacatattgcaacgattccaagaacaataggttggatcaa 15307705  T
Q  410 attcatcatctaccggtggaatcgttccatccacaaattcaagcttcatcttcgcgccaagatctcatcgcatagcacatgcccaagaatgatagttaga 509  Q
    |   |||||| |||| ||| ||||||||||| ||||| |||| |||||||||||||||||||  ||  |||||||| |||||||||||||||||||||||    
T  15307706 acaaatcatccaccgatgggatcgttccatcaacaaactcaaacttcatcttcgcgccaagagatctacgcatagctcatgcccaagaatgatagttaga 15307805  T
Q  510 accattcaaaaccggtgtaaccgtaacagaagatggaccatcaccaggatgaacaaaaaacggactagactgatcaagaacaatctcaga 599  Q
     |||||||||||| ||||||| ||||  ||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  15307806 tccattcaaaaccagtgtaactgtaaatgaagaaggaccatcaccagggtgaacaaaaaatggactagactgatcaagaacaatctcaga 15307895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 15 - 599
Target Start/End: Original strand, 15312600 - 15313189
Alignment:
Q  15 catagaaaaattatcatttaaaccagtaagaaacctcatagcatacaacataagatgatttttgcgagcgtttctcatggcttcacatacacattgatgc 114  Q
    |||||| ||||| ||||| |||||| | ||||||||||||||||| | || ||||||||| || | |||  ||||||||| |||||||||||| |||||     
T  15312600 catagagaaattttcattcaaaccattgagaaacctcatagcatatagcaaaagatgattctttctagcagttctcatggattcacatacacactgatgt 15312699  T
Q  115 ctgcaactacaactaggtataggaatatagatctctaattcttcccacaaaatcttcaattctgaataaaag-----gtggtaactgacttggattcttg 209  Q
    |||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||      || |||||| |||||||||||||    
T  15312700 ctgcaactgcaactaggtataggaatataaatctctaactcttcccacaaaatcttcaattctgaaaaaaaaaatatgtagtaactaacttggattcttg 15312799  T
Q  210 ctgtaacgcataaatctcttgcattaactctgaaattcgaaccaaatctccgtgagaaatgcgttctttgagatcattccacacatccatggcattatcc 309  Q
     ||||||||||||||||||||||| || |||||||| ||||||||| | || |||||||  |||||||||||||||||||||||||||||||| || |||    
T  15312800 ttgtaacgcataaatctcttgcatcaattctgaaatacgaaccaaaccaccttgagaaaaacgttctttgagatcattccacacatccatggcgttttcc 15312899  T
Q  310 atgaagatgatggactgagaaattgaaggagaaaccgaattcaggatccatgaaagtattaacatattgcaacgattccaagaacgataagttggatcaa 409  Q
    ||||||||||||||||||||||||||||| |||||  |||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  15312900 atgaagatgatggactgagaaattgaaggggaaacataattcaagatccatgaaagtattaacatattgcaacgattccaagaacaataggttggatcaa 15312999  T
Q  410 attcatcatctaccggtggaatcgttccatccacaaattcaagcttcatcttcgcgccaagatctcatcgcatagcacatgcccaagaatgatagttaga 509  Q
    |   |||||| |||| ||| ||||||||||| ||||| |||| |||||||||||||||||||  ||  |||||||| |||||||||||||||||||||||    
T  15313000 acaaatcatccaccgatgggatcgttccatcaacaaactcaaacttcatcttcgcgccaagagatctacgcatagctcatgcccaagaatgatagttaga 15313099  T
Q  510 accattcaaaaccggtgtaaccgtaacagaagatggaccatcaccaggatgaacaaaaaacggactagactgatcaagaacaatctcaga 599  Q
     |||||||||||| ||||||| ||||  ||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  15313100 tccattcaaaaccagtgtaactgtaaatgaagaaggaccatcaccagggtgaacaaaaaatggactagactgatcaagaacaatctcaga 15313189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 22 - 597
Target Start/End: Complemental strand, 33458323 - 33457748
Alignment:
Q  22 aaattatcatttaaaccagtaagaaacctcatagcatacaacataagatgatttttgcgagcgtttctcatggcttcacatacacattgatgcctgcaac 121  Q
    ||||| ||||| | || ||||||||| | ||||||||| ||||||| ||||||||| | |||  | | ||| ||||||||   ||||||    |||||||    
T  33458323 aaattttcattgagactagtaagaaaacgcatagcatataacataacatgatttttcctagcagtgcgcatagcttcacaagaacattggattctgcaac 33458224  T
Q  122 tacaactaggtataggaatatagatctctaattcttcccacaaaatcttcaattctgaataaaaggtggtaactgacttggattcttgctgtaacgcata 221  Q
    |||| ||||| ||||| | ||| || ||||| |||||||| || |  |||||||  || || ||  | ||||| || || || ||||| ||||  | |||    
T  33458223 tacagctaggcataggtagatatatttctaactcttcccataatactttcaatttagagtagaaattagtaacagattttgaatcttgttgtacagaata 33458124  T
Q  222 aatctcttgcattaactctgaaattcgaaccaaatctccgtgagaaatgcgttctttgagatcattccacacatccatggcattatccatgaagatgatg 321  Q
    ||| |||||||| |  || ||||| ||||||||||| || |||| ||  ||||| || ||||||||||||||||||||||| || |||||||| |  ||     
T  33458123 aatttcttgcataagttcagaaatacgaaccaaatcaccttgagcaaaacgttccttaagatcattccacacatccatggcgttttccatgaaaactata 33458024  T
Q  322 gactgagaaattgaaggagaaaccgaattcaggatccatgaaagtattaacatattgcaacgattccaagaacgataagttggatcaaattcatcatcta 421  Q
    || |||||||||||||||   || ||||||| |||||||||  | || |||||||| || |||||||||| |||| |||  ||||||||   |||    |    
T  33458023 gattgagaaattgaaggatctactgaattcaagatccatgagtgaatcaacatattacaccgattccaagcacgaaaagaaggatcaaacgaatctgtaa 33457924  T
Q  422 ccggtggaatcgttccatccacaaattcaagcttcatcttcgcgccaagatctcatcgcatagcacatgcccaagaatgatagttagaaccattcaaaac 521  Q
    |||| ||||| |||||||| |||||||||| |||||| ||  | |||||| ||| |||||| | ||  ||||||||||||||||||||||||||||| |     
T  33457923 ccggaggaatagttccatcaacaaattcaaacttcatttttcccccaagagctcttcgcatcgaacgagcccaagaatgatagttagaaccattcaataa 33457824  T
Q  522 cggtgtaaccgtaacagaagatggaccatcaccaggatgaacaaaaaacggactagactgatcaagaacaatctca 597  Q
     || ||||| || |||||||| |||||||||| || |||||||||| |||| || |  ||||||||| ||||||||    
T  33457823 tggcgtaactgttacagaagaaggaccatcactagaatgaacaaaatacgggcttgtttgatcaagagcaatctca 33457748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 22 - 597
Target Start/End: Complemental strand, 34822481 - 34821906
Alignment:
Q  22 aaattatcatttaaaccagtaagaaacctcatagcatacaacataagatgatttttgcgagcgtttctcatggcttcacatacacattgatgcctgcaac 121  Q
    ||||| ||||| | |||||||||||| | ||||||||| |||| || ||||||||| | |||  | | ||| ||||||||   ||||||    |||||||    
T  34822481 aaattttcattgagaccagtaagaaaacgcatagcatataacagaacatgatttttcctagcagtgcgcatagcttcacaggaacattggattctgcaac 34822382  T
Q  122 tacaactaggtataggaatatagatctctaattcttcccacaaaatcttcaattctgaataaaaggtggtaactgacttggattcttgctgtaacgcata 221  Q
    |||| ||||| ||||| | |||||| ||||| |||||||| || |  |||||||| || || ||  | ||||| || || || ||||| ||||| | |||    
T  34822381 tacagctaggcataggtagatagatttctaactcttcccataatactttcaattcagagtagaaattagtaacagattttgaatcttgttgtaaagaata 34822282  T
Q  222 aatctcttgcattaactctgaaattcgaaccaaatctccgtgagaaatgcgttctttgagatcattccacacatccatggcattatccatgaagatgatg 321  Q
     || |||||||| |  || ||||| ||||||||||| || |||| ||  ||||| || ||||||||||||||||||||||| || |||||||| |  ||     
T  34822281 gatttcttgcataagttcagaaatacgaaccaaatcaccttgagcaaaacgttccttaagatcattccacacatccatggcgttttccatgaaaacaata 34822182  T
Q  322 gactgagaaattgaaggagaaaccgaattcaggatccatgaaagtattaacatattgcaacgattccaagaacgataagttggatcaaattcatcatcta 421  Q
    || ||||||||||||| |   || ||||||| |||||||||  | || | |||||| || |||||||||| |||| |||  ||||||||   |||    |    
T  34822181 gattgagaaattgaagaatctactgaattcaagatccatgagtgaatcagcatattacaccgattccaagcacgaaaagaaggatcaaacgaatctgtaa 34822082  T
Q  422 ccggtggaatcgttccatccacaaattcaagcttcatcttcgcgccaagatctcatcgcatagcacatgcccaagaatgatagttagaaccattcaaaac 521  Q
    |||| | ||| |||||||| |||||||||| |||||| ||  | |||||| ||| |||||| | ||  ||||||||||||||||||||||||||||  |     
T  34822081 ccggagaaatagttccatcaacaaattcaaacttcatttttcccccaagagctcttcgcatcgaacgagcccaagaatgatagttagaaccattcagcaa 34821982  T
Q  522 cggtgtaaccgtaacagaagatggaccatcaccaggatgaacaaaaaacggactagactgatcaagaacaatctca 597  Q
     || ||||| || |||||||| |||||||||| || |||||||||| |||| || |  ||||||||| ||| ||||    
T  34821981 tggcgtaactgttacagaagaaggaccatcactagaatgaacaaaatacgggcttgtttgatcaagagcaacctca 34821906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 96 - 396
Target Start/End: Complemental strand, 10740425 - 10740125
Alignment:
Q  96 ttcacatacacattgatgcctgcaactacaactaggtataggaatatagatctctaattcttcccacaaaatcttcaattctgaataaaaggtggtaact 195  Q
    |||||| |||||||||   || ||||| |||||| | ||| ||| ||| || || || |||||||| |||| ||||||||  ||||| || || ||||||    
T  10740425 ttcacaaacacattgaattctacaactgcaactaagcatatgaagataaatttccaactcttcccataaaaccttcaatttagaatagaaagtagtaact 10740326  T
Q  196 gacttggattcttgctgtaacgcataaatctcttgcattaactctgaaattcgaaccaaatctccgtgagaaatgcgttctttgagatcattccacacat 295  Q
    ||||| || ||||| || ||| ||||||| ||||||||||| ||| |||||   |||||||  || |||| ||  ||||  || ||||| ||||  ||||    
T  10740325 gactttgaatcttgttgcaacccataaatttcttgcattaattcttaaattattaccaaattaccttgagcaaatcgtttcttaagatcgttcctaacat 10740226  T
Q  296 ccatggcattatccatgaagatgatggactgagaaattgaaggagaaaccgaattcaggatccatgaaagtattaacatattgcaacgattccaagaacg 395  Q
    |||| ||||| |||||||| | ||||||||||||||| |||||||||||  |||| | |||||||||| | || ||||| |||||| ||||||||| |||    
T  10740225 ccatagcattttccatgaaaacgatggactgagaaatcgaaggagaaacataatttaagatccatgaatgaatcaacatgttgcaatgattccaagcacg 10740126  T
Q  396 a 396  Q
    |    
T  10740125 a 10740125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 140; Significance: 8e-73; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 140; E-Value: 8e-73
Query Start/End: Original strand, 798 - 997
Target Start/End: Complemental strand, 10545402 - 10545205
Alignment:
Q  798 tgatatttattttcattgctgaaggatgaaggtgttacaactatatatagagttacaatgatagtatatgctaagatattgtgaactctatcttatagga 897  Q
    |||||| | |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||    
T  10545402 tgatatctgttttcattactgaagcatgaaggtgttacaactatatatagagttacaatgatagtatatgttaagctattgtgaactctatattatagga 10545303  T
Q  898 tcatgtcctctatccataactaactctgagagttagttacaaccaactttatcactagggttcttaataacctggtggactaagtaattgtgccctagcg 997  Q
    ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||||| ||||||||||||    
T  10545302 tcacgtcctctat-cataactaactctgagagttagttacaaccaactttatcactagggttgttaataacc-cgtggactaagtaactgtgccctagcg 10545205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 22 - 597
Target Start/End: Complemental strand, 37190760 - 37190185
Alignment:
Q  22 aaattatcatttaaaccagtaagaaacctcatagcatacaacataagatgatttttgcgagcgtttctcatggcttcacatacacattgatgcctgcaac 121  Q
    ||||| ||||| | |||||||||||| | ||||||||| |||| || ||||||||| | |||  | | ||| ||||||||   ||||||    |||||||    
T  37190760 aaattttcattgagaccagtaagaaaacgcatagcatataacagaacatgatttttcctagcagtgcgcatagcttcacaggaacattggattctgcaac 37190661  T
Q  122 tacaactaggtataggaatatagatctctaattcttcccacaaaatcttcaattctgaataaaaggtggtaactgacttggattcttgctgtaacgcata 221  Q
    |||| ||||| ||||| | |||||| ||||| |||||||| || |  |||||||| || || ||  | ||||| || || || ||||| ||||| | |||    
T  37190660 tacagctaggcataggtagatagatttctaactcttcccataatactttcaattcagagtagaaattagtaacagattttgaatcttgttgtaaagaata 37190561  T
Q  222 aatctcttgcattaactctgaaattcgaaccaaatctccgtgagaaatgcgttctttgagatcattccacacatccatggcattatccatgaagatgatg 321  Q
     || |||||||| |  || ||||| ||||||||||| || |||| ||  ||||| || ||||||||||||||||||||||| || |||||||| |  ||     
T  37190560 gatttcttgcataagttcagaaatacgaaccaaatcaccttgagcaaaacgttccttaagatcattccacacatccatggcgttttccatgaaaacaata 37190461  T
Q  322 gactgagaaattgaaggagaaaccgaattcaggatccatgaaagtattaacatattgcaacgattccaagaacgataagttggatcaaattcatcatcta 421  Q
    || ||||||||||||| |   || ||||||| |||||||||  | || | |||||| || |||||||||| |||| |||  ||||||||   |||    |    
T  37190460 gattgagaaattgaagaatctactgaattcaagatccatgagtgaatcagcatattacaccgattccaagcacgaaaagaaggatcaaacgaatctgtaa 37190361  T
Q  422 ccggtggaatcgttccatccacaaattcaagcttcatcttcgcgccaagatctcatcgcatagcacatgcccaagaatgatagttagaaccattcaaaac 521  Q
    |||| | ||| |||||||| |||||||||| |||||| ||  | |||||| ||| |||||| | ||  ||||||||||||||||||||||||||||| |     
T  37190360 ccggagaaatagttccatcaacaaattcaaacttcatttttcccccaagagctcttcgcatcgaacgagcccaagaatgatagttagaaccattcaacaa 37190261  T
Q  522 cggtgtaaccgtaacagaagatggaccatcaccaggatgaacaaaaaacggactagactgatcaagaacaatctca 597  Q
     || ||||| || |||||||| |||||||||| || |||||||||| |||| || |  ||||||||| ||| ||||    
T  37190260 tggcgtaactgttacagaagaaggaccatcactagaatgaacaaaatacgggcttgtttgatcaagagcaacctca 37190185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 157 - 362
Target Start/End: Original strand, 19474332 - 19474537
Alignment:
Q  157 tcccacaaaatcttcaattctgaataaaaggtggtaactgacttggattcttgctgtaacgcataaatctcttgcattaactctgaaattcgaaccaaat 256  Q
    ||||||||||||||||| || || |||||| | ||||  |  ||||| ||||| ||  | |||||||| |||||||| |  || |||||||  |||||||    
T  19474332 tcccacaaaatcttcaactcagagtaaaagatagtaatagttttggaatcttgttgcgatgcataaatttcttgcatgagttcagaaattcttaccaaat 19474431  T
Q  257 ctccgtgagaaatgcgttctttgagatcattccacacatccatggcattatccatgaagatgatggactgagaaattgaaggagaaaccgaattcaggat 356  Q
    | || || |||| |||||| || | ||||||||| |||||   ||| || ||||||||||||||||| || | |||||||||||| || ||||||| |||    
T  19474432 caccatgtgaaaagcgttcattcaaatcattccaaacatcacaggcgttttccatgaagatgatggattgtgcaattgaaggagacacagaattcacgat 19474531  T
Q  357 ccatga 362  Q
    ||||||    
T  19474532 ccatga 19474537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 6e-49; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 22 - 597
Target Start/End: Complemental strand, 2995186 - 2994611
Alignment:
Q  22 aaattatcatttaaaccagtaagaaacctcatagcatacaacataagatgatttttgcgagcgtttctcatggcttcacatacacattgatgcctgcaac 121  Q
    ||||| ||||| | |||||||||||| | ||||||||| |||| || ||||||||| | |||  | | ||| ||||||||   ||||||    |||||||    
T  2995186 aaattttcattgagaccagtaagaaaacgcatagcatataacagaacatgatttttcctagcagtgcgcatagcttcacaagaacattggattctgcaac 2995087  T
Q  122 tacaactaggtataggaatatagatctctaattcttcccacaaaatcttcaattctgaataaaaggtggtaactgacttggattcttgctgtaacgcata 221  Q
    |||| ||||| ||||| | ||| || ||||| |||||||| || |  |||||||| || || ||  | ||||| || || || ||||| ||||| | |||    
T  2995086 tacagctaggcataggtagatatatttctaactcttcccataatactttcaattcagagtagaaattagtaacagattttgaatcttgttgtaaagaata 2994987  T
Q  222 aatctcttgcattaactctgaaattcgaaccaaatctccgtgagaaatgcgttctttgagatcattccacacatccatggcattatccatgaagatgatg 321  Q
     || |||||||| |  || ||||| ||||||||||| || |||| ||  ||||| || ||||||||||||||||||||||| || |||||||| |  ||     
T  2994986 gatttcttgcataagttcagaaatacgaaccaaatcaccttgagcaaaccgttccttaagatcattccacacatccatggcgttttccatgaaaacaata 2994887  T
Q  322 gactgagaaattgaaggagaaaccgaattcaggatccatgaaagtattaacatattgcaacgattccaagaacgataagttggatcaaattcatcatcta 421  Q
    || |||||||||||||||   || ||||||| |||||||||  | || | |||||| || |||||||||| |||| |||  ||||||||   |||    |    
T  2994886 gattgagaaattgaaggatctactgaattcaagatccatgagtgaatcagcatattacaccgattccaagcacgaaaagaaggatcaaacgaatctgtaa 2994787  T
Q  422 ccggtggaatcgttccatccacaaattcaagcttcatcttcgcgccaagatctcatcgcatagcacatgcccaagaatgatagttagaaccattcaaaac 521  Q
    |||| ||||| |||||||| |||||||||| |||||| ||  | |||||| ||| |||||| | ||  ||||||||||||||||||||||||||||| |     
T  2994786 ccggaggaatagttccatcaacaaattcaaacttcatttttcccccaagagctcttcgcatcgaacgagcccaagaatgatagttagaaccattcaataa 2994687  T
Q  522 cggtgtaaccgtaacagaagatggaccatcaccaggatgaacaaaaaacggactagactgatcaagaacaatctca 597  Q
     || ||||| || |||||||| |||||||||| || |||||||||| |||| || |  ||||||||| ||||||||    
T  2994686 tggcgtaactgttacagaagaaggaccatcactagaatgaacaaaatacgggcttgtttgatcaagagcaatctca 2994611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 93; Significance: 9e-45; HSPs: 3)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 118 - 597
Target Start/End: Original strand, 22691 - 23170
Alignment:
Q  118 caactacaactaggtataggaatatagatctctaattcttcccacaaaatcttcaattctgaataaaaggtggtaactgacttggattcttgctgtaacg 217  Q
    |||||||||||||| ||||| | ||| ||||| || |||||||| || |  |||||||| || ||||| || |||||| | ||||| |||||||||||      
T  22691 caactacaactaggcataggcaaatatatctccaaatcttcccataacactttcaattcagagtaaaatgtagtaactaatttggaatcttgctgtaaaa 22790  T
Q  218 cataaatctcttgcattaactctgaaattcgaaccaaatctccgtgagaaatgcgttctttgagatcattccacacatccatggcattatccatgaagat 317  Q
     ||||||||||||| | |  || ||||||||||||||||| || |||| || || ||| ||||||| |||||||||||||||||| || |||||| | |     
T  22791 aataaatctcttgcttaagttcagaaattcgaaccaaatcaccttgagcaaagcattccttgagataattccacacatccatggcgttttccatgcaaac 22890  T
Q  318 gatggactgagaaattgaaggagaaaccgaattcaggatccatgaaagtattaacatattgcaacgattccaagaacgataagttggatcaaattcatca 417  Q
     || || |||||| ||||||||   || ||||||| |||||||||  | || | ||| ||||| |||||||||| |||| |||  ||||||||   |||     
T  22891 aatagattgagaatttgaaggatctactgaattcaagatccatgagtgaatcagcatgttgcaccgattccaagcacgaaaagaaggatcaaaagaatct 22990  T
Q  418 tctaccggtggaatcgttccatccacaaattcaagcttca-tcttcgcgccaagatctcatcgcatagcacatgcccaagaatgatagttagaaccattc 516  Q
       || || ||||| ||  |||| |||||||||  ||||| | ||||| |||| | ||| |||||| | ||  |||||||||||||||||||||||||||    
T  22991 atgactggaggaatggtgtcatcaacaaattcatacttcatttttcgc-ccaatagctcttcgcatcgaacgagcccaagaatgatagttagaaccattc 23089  T
Q  517 aaaaccggtgtaaccgtaacagaagatggaccatcaccaggatgaacaaaaaacggactagactgatcaagaacaatctca 597  Q
    || |  ||||||||| | | ||||||||||||||||| ||| ||||||||| |||| ||||  ||||||||| ||||||||    
T  23090 aacaatggtgtaaccattatagaagatggaccatcactagggtgaacaaaagacgggctagtttgatcaagagcaatctca 23170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 118 - 597
Target Start/End: Original strand, 13633 - 14112
Alignment:
Q  118 caactacaactaggtataggaatatagatctctaattcttcccacaaaatcttcaattctgaataaaaggtggtaactgacttggattcttgctgtaacg 217  Q
    |||||||||||||| ||||| | ||| ||||| || |||||||| || |  |||||||| || ||||| || |||||| | ||| | |||||||||||      
T  13633 caactacaactaggcataggcaaatatatctccaaatcttcccataacactttcaattcagagtaaaatgtagtaactaatttgaaatcttgctgtaaaa 13732  T
Q  218 cataaatctcttgcattaactctgaaattcgaaccaaatctccgtgagaaatgcgttctttgagatcattccacacatccatggcattatccatgaagat 317  Q
     ||||||||||||| | |  || ||||||||||||||||| || |||| || || ||| ||||||| |||||||||||||||||  || |||||||| |     
T  13733 aataaatctcttgcttaagttcagaaattcgaaccaaatcaccttgagcaaagcattccttgagataattccacacatccatggagttttccatgaaaac 13832  T
Q  318 gatggactgagaaattgaaggagaaaccgaattcaggatccatgaaagtattaacatattgcaacgattccaagaacgataagttggatcaaattcatca 417  Q
     || || |||||| ||||||||   || ||||||| |||||||||  | || | ||| ||||| |||||||||| |||| |||  ||||||||   |||     
T  13833 aatagattgagaatttgaaggatctactgaattcaagatccatgagtgaatcagcatgttgcaccgattccaagcacgaaaagaaggatcaaaagaatct 13932  T
Q  418 tctaccggtggaatcgttccatccacaaattcaagcttca-tcttcgcgccaagatctcatcgcatagcacatgcccaagaatgatagttagaaccattc 516  Q
       || || ||||| ||  |||| |||||||||  ||||| | ||||| |||| | ||| |||||| | ||  |||||||||||||||||||||||||||    
T  13933 atgactggaggaatggtgtcatcaacaaattcatacttcatttttcgc-ccaatagctcttcgcatcgaacgagcccaagaatgatagttagaaccattc 14031  T
Q  517 aaaaccggtgtaaccgtaacagaagatggaccatcaccaggatgaacaaaaaacggactagactgatcaagaacaatctca 597  Q
    || |  ||||||||| | | ||||||||||||||||| ||| ||||||||| |||| ||||  ||||||||| ||||||||    
T  14032 aacaatggtgtaaccattatagaagatggaccatcactagggtgaacaaaagacgggctagtttgatcaagagcaatctca 14112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 490 - 597
Target Start/End: Original strand, 69389 - 69496
Alignment:
Q  490 gcccaagaatgatagttagaaccattcaaaaccggtgtaaccgtaacagaagatggaccatcaccaggatgaacaaaaaacggactagactgatcaagaa 589  Q
    ||||||||||||||||||||||||||||| |  ||||||||| | ||||||||||||||||||| ||| ||||||||| |||| ||||  |||||||||     
T  69389 gcccaagaatgatagttagaaccattcaacaatggtgtaaccattacagaagatggaccatcactagggtgaacaaaagacgggctagtttgatcaagag 69488  T
Q  590 caatctca 597  Q
    ||||||||    
T  69489 caatctca 69496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 296
Target Start/End: Original strand, 18503068 - 18503222
Alignment:
Q  142 tagatctctaattcttcccacaaaatcttcaattctgaataaaaggtggtaactgacttggattcttgctgtaacgcataaatctcttgcattaactctg 241  Q
    |||||||| | ||||||||| |||||||||||||| || |||||  | || || |  ||||||||||| || |  ||||| || |||||||| |  || |    
T  18503068 tagatctcaagttcttcccataaaatcttcaattcagagtaaaaaatagttacagttttggattcttgttgcagtgcatagatttcttgcataagttcag 18503167  T
Q  242 aaattcgaaccaaatctccgtgagaaatgcgttctttgagatcattccacacatc 296  Q
    ||||||  |||||||| || |||||||  ||||| || ||||||||||| |||||    
T  18503168 aaattcttaccaaatcaccttgagaaaatcgttcctttagatcattccaaacatc 18503222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 490 - 584
Target Start/End: Original strand, 26363474 - 26363568
Alignment:
Q  490 gcccaagaatgatagttagaaccattcaaaaccggtgtaaccgtaacagaagatggaccatcaccaggatgaacaaaaaacggactagactgatc 584  Q
    ||||| || ||||| || ||||||| |||||| || | |||||||||| |||| |||||||| |  ||||||||||| || |||||||| |||||    
T  26363474 gcccaggagtgataattcgaaccatccaaaactggagaaaccgtaacaaaagaaggaccatcgcttggatgaacaaagaaaggactagattgatc 26363568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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