View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4793-Insertion-20 (Length: 369)
Name: NF4793-Insertion-20
Description: NF4793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4793-Insertion-20 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 44 - 369
Target Start/End: Original strand, 53604213 - 53604541
Alignment:
| Q |
44 |
aggaaaaacttatacataaaatatattgattaggnnnnnnnttgaatggcacctaagaacacaataaaaggaagacatgattggaacatagtcaatttat |
143 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
53604213 |
aggaaaaacttatacataaaatatattgattaggaaaaaaattgaatggcacctaagaacacaataaaaggaagacatgattggaacatagtcaacttct |
53604312 |
T |
|
| Q |
144 |
aatggatatcttctttcagggaagggctcaaggttgcatctcaggcatatgttcgattgcacatattgtatctcctttggctttctctccattaacgggt |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53604313 |
aatggatatcttctttcagggaagggctcaaggttgcatctcaggcatatgttcgattgcacatattgtatctcctttggctttctctccattaacgggt |
53604412 |
T |
|
| Q |
244 |
gagtggaaactcataatgtcccatcatgttcatattattacagaaaat----tattaacaataacttattctcnnnnnnnnnagctctatttctatctga |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
53604413 |
gagtggaaactcataatgtcccatcatgttcatattattacagaaaattatatattaacaaaaacttattctc-ttttttttagctctatttctatctga |
53604511 |
T |
|
| Q |
340 |
aaaggcaccttttaattttcctggcttcag |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
53604512 |
aaaggcaccttttaattttcctggcttcag |
53604541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 53604156 - 53604191
Alignment:
| Q |
8 |
gtgagcaggtatcatgttaatagtattggttagtgg |
43 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
53604156 |
gtgagcaggtatcatgttaatagtattggttagtgg |
53604191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University