View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4793-Insertion-21 (Length: 350)
Name: NF4793-Insertion-21
Description: NF4793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4793-Insertion-21 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0402 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 8 - 350
Target Start/End: Original strand, 2921 - 3264
Alignment:
| Q |
8 |
tcatattttggatgatttgtattagccttctatatcaatcatttttcactgcataatcctgccaacaaatgttttgaaatcccgattttattgttatttc |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2921 |
tcatattttggatgatttgtattagccttctatatcaatcattttccacagcataatcctgccaacaaatgttttgaaatcccgattttattgttatttc |
3020 |
T |
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| Q |
108 |
tatatttctcggacatataattttcctctgattccccaaagg-agcaatatgtcatttaatttgatgactcttttggactgctctttgatttttctttta |
206 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3021 |
tatatttctcggacatataattttcctatgattccccaaagggagcaatatgtcatttaatttgatgactcttttggactgctctttgatttttctttta |
3120 |
T |
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| Q |
207 |
actggttctcttatgtaatggtttaaattgaaatttgttgagttaaataatagtaactttctacaatttcttatcctcattttctttagtcatcattttc |
306 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3121 |
actggttctcttatgtaatggtttcaattgaaatttgttgagttaaataatagtaactttctacaatttcttatcctcattttctttagtcatcattttc |
3220 |
T |
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| Q |
307 |
cagcggaattgcaaggcaagtggaaggaaaaccttctatcttag |
350 |
Q |
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| T |
3221 |
cagcggaattgcaaggcaagtggaaggaaaaccttctatcttag |
3264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 8 - 301
Target Start/End: Original strand, 19335821 - 19336115
Alignment:
| Q |
8 |
tcatattttggatgatttgtattagccttctatatcaatcatttttcactgcataatcctgccaacaaatgttttgaaatcccgattttattgttatttc |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19335821 |
tcatattttggatgatttgtattagccttctatatcaatcattttccactgcataatcctgccaacaaatgttttgaaatcccgattttattgttatttc |
19335920 |
T |
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| Q |
108 |
tatatttctcggacatataattttcctctgattccccaaagg-agcaatatgtcatttaatttgatgactcttttggactgctctttgatttttctttta |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19335921 |
tatatttctcggacatataattttcctctgattccccaaagggagcaatatgtcatttaatttgatgactcttttggactgctctttgatttttctttta |
19336020 |
T |
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| Q |
207 |
actggttctcttatgtaatggtttaaattgaaatttgttgagttaaataatagtaactttctacaatttcttatcctcattttctttagtcatca |
301 |
Q |
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| T |
19336021 |
actggttctcttatgtaatggtttaaattgaattttgttgagttaaataatagtaactttctacaatttcttatcctcattttctttagtcatca |
19336115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0402 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: scaffold0402
Description:
Target: scaffold0402; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 8 - 301
Target Start/End: Original strand, 14980 - 15274
Alignment:
| Q |
8 |
tcatattttggatgatttgtattagccttctatatcaatcatttttcactgcataatcctgccaacaaatgttttgaaatcccgattttattgttatttc |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14980 |
tcatattttggatgatttgtattagccttctatatcaatcattttccacagcaaaatcctgccaacaaatgttttgaaatcccgattttattgttatttc |
15079 |
T |
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| Q |
108 |
tatatttctcggacatataattttcctctgattccccaaagg-agcaatatgtcatttaatttgatgactcttttggactgctctttgatttttctttta |
206 |
Q |
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| T |
15080 |
tatatttctcggacatataattttcctatgattccccaaagggagcaatatgtcatttaatttgatgactcttttggactgctctttgatttttctttta |
15179 |
T |
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| Q |
207 |
actggttctcttatgtaatggtttaaattgaaatttgttgagttaaataatagtaactttctacaatttcttatcctcattttctttagtcatca |
301 |
Q |
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| T |
15180 |
actggttctcttatgtaatggtttaaattgaaatttgttgagttaaataatagtaactttctacaatttcttatcctcattttctttagtcatca |
15274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 8 - 301
Target Start/End: Complemental strand, 17938963 - 17938669
Alignment:
| Q |
8 |
tcatattttggatgatttgtattagccttctatatcaatcatttttcactgcataatcctgccaacaaatgttttgaaatcccgattttattgttatttc |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17938963 |
tcatattttggatgatttgtattagccttctatatcaatcattttccacagcaaaatcctgccaacaaatgttttgaaatcccgattttattgttatttc |
17938864 |
T |
|
| Q |
108 |
tatatttctcggacatataattttcctctgattccccaaagg-agcaatatgtcatttaatttgatgactcttttggactgctctttgatttttctttta |
206 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17938863 |
tatatttctcggacatataattttcctatgattccccaaagggagcaatatgtcatttaatttgatgactcttttggactgctctttgatttttctttta |
17938764 |
T |
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| Q |
207 |
actggttctcttatgtaatggtttaaattgaaatttgttgagttaaataatagtaactttctacaatttcttatcctcattttctttagtcatca |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17938763 |
actggttctcttatgtaatggtttaaattgaaatttgttgagttaaataatagtaactttctacaatttcttatcctcattttctttagtcatca |
17938669 |
T |
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