View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4793-Insertion-22 (Length: 345)
Name: NF4793-Insertion-22
Description: NF4793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4793-Insertion-22 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 7 - 345
Target Start/End: Original strand, 2360956 - 2361282
Alignment:
| Q |
7 |
aaatcaaactgtatatcacttggaattgaaaacattgattcagattcagctacttcttcagaagatgaacaacattgaagaactgaagtaggagaaaata |
106 |
Q |
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| T |
2360956 |
aaatcaaactgtatatcacttggaattgaaaacattgattcagattcagctacttcttcagaagatgaacaacattgaagaactgaagtaggagaaaata |
2361055 |
T |
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| Q |
107 |
aactcttattattattgttttgagattgtgattgagattgagattcttcaccggagtttgccggtaacggtaatgacggaagaggaatttcattttccgg |
206 |
Q |
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| T |
2361056 |
aactcttattattattgttttga------------gattgagattcttcaccggagtttgccggtaacggtaatgacgaaagaggaatttcattttccgg |
2361143 |
T |
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| Q |
207 |
tggtggtgatgataactgacacgtggcagctgcacttacaggtggagttatgaaattagttagcgcgtctggtccacgcaacttaatagccgcgttgtcg |
306 |
Q |
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| T |
2361144 |
tggtggtgatgataactgacacgtggcagctgcacttacaggtggagttatgaaattagttagcgcgtctggtccacgcaacttaatagccgcgttgtcg |
2361243 |
T |
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| Q |
307 |
tacacaatagcagcttcttcagccgtttgaaatgtacca |
345 |
Q |
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| T |
2361244 |
tacacaatagcagcttcttcagccgtttgaaatgtacca |
2361282 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 344
Target Start/End: Complemental strand, 41197611 - 41197538
Alignment:
| Q |
271 |
gcgtctggtccacgcaacttaatagccgcgttgtcgtacacaatagcagcttcttcagccgtttgaaatgtacc |
344 |
Q |
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| T |
41197611 |
gcgtctggtccacgaagcttaatagcggcattgtcataaaccatagcagcttcttctgcagtttcaaaagtacc |
41197538 |
T |
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