View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4793-Insertion-26 (Length: 227)

Name: NF4793-Insertion-26
Description: NF4793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4793-Insertion-26
NF4793-Insertion-26
[»] chr6 (6 HSPs)
chr6 (8-227)||(27772984-27773189)
chr6 (175-227)||(27656496-27656548)
chr6 (178-227)||(8026642-8026691)
chr6 (182-227)||(19712990-19713035)
chr6 (180-221)||(27653261-27653302)
chr6 (179-227)||(15081906-15081954)
[»] chr1 (6 HSPs)
chr1 (182-227)||(52650772-52650817)
chr1 (182-227)||(51459706-51459751)
chr1 (182-226)||(7653515-7653559)
chr1 (179-226)||(25137301-25137348)
chr1 (182-220)||(51460443-51460481)
chr1 (182-227)||(29265991-29266036)
[»] chr2 (3 HSPs)
chr2 (180-227)||(5509117-5509164)
chr2 (182-221)||(30701126-30701165)
chr2 (180-221)||(17854691-17854732)
[»] chr7 (4 HSPs)
chr7 (182-227)||(36993075-36993120)
chr7 (182-226)||(7786255-7786299)
chr7 (182-227)||(3038085-3038130)
chr7 (182-227)||(21861332-21861377)
[»] chr5 (7 HSPs)
chr5 (182-227)||(9368633-9368678)
chr5 (180-227)||(8098355-8098402)
chr5 (180-227)||(8287839-8287886)
chr5 (180-227)||(21209920-21209967)
chr5 (182-227)||(8081114-8081159)
chr5 (182-227)||(15480597-15480642)
chr5 (182-227)||(24528578-24528623)
[»] chr4 (8 HSPs)
chr4 (182-227)||(28073182-28073227)
chr4 (180-227)||(20822011-20822058)
chr4 (180-227)||(53814673-53814720)
chr4 (178-227)||(21498833-21498882)
chr4 (182-219)||(21685044-21685081)
chr4 (182-227)||(39902564-39902609)
chr4 (182-227)||(52559605-52559650)
chr4 (180-221)||(53814928-53814969)
[»] chr8 (10 HSPs)
chr8 (180-227)||(4963392-4963439)
chr8 (172-227)||(19256577-19256632)
chr8 (182-227)||(10615157-10615202)
chr8 (182-227)||(22638180-22638225)
chr8 (182-227)||(24532422-24532467)
chr8 (182-227)||(38476076-38476121)
chr8 (183-227)||(4828331-4828375)
chr8 (182-226)||(12317085-12317129)
chr8 (183-227)||(26800514-26800558)
chr8 (179-227)||(34653188-34653236)
[»] chr3 (9 HSPs)
chr3 (180-227)||(9272999-9273046)
chr3 (180-227)||(20327848-20327895)
chr3 (182-227)||(7697399-7697444)
chr3 (182-227)||(8019006-8019051)
chr3 (182-227)||(16239629-16239674)
chr3 (182-227)||(33640083-33640128)
chr3 (182-227)||(45828284-45828329)
chr3 (182-227)||(47702410-47702455)
chr3 (180-220)||(13574920-13574960)
[»] scaffold0692 (1 HSPs)
scaffold0692 (182-227)||(5545-5590)
[»] scaffold0181 (1 HSPs)
scaffold0181 (182-227)||(20977-21022)
[»] scaffold0005 (1 HSPs)
scaffold0005 (182-227)||(288658-288703)


Alignment Details
Target: chr6 (Bit Score: 149; Significance: 7e-79; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 8 - 227
Target Start/End: Complemental strand, 27773189 - 27772984
Alignment:
Q  8 gttttatgatatttttatacgttaccattaaattctcctccatttgtcagagcatattattcagagcatctttaatagggtatctaaatgagttgcatag 107  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||              ||||||||||||||||||||||    
T  27773189 gttttatgatatttttatacgttatcattaaattctcctccatttgtcagagcatattattcag--------------ggtatctaaatgagttgcatag 27773104  T
Q  108 aagactgtgatctgtcaggtgaagatggatggtggctacgccggtaaaggcacggtgcggtggagatgtaattattagaaattatggttgggcttaacac 207  Q
    |||| ||||||||||||||||| ||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  27773103 aagaatgtgatctgtcaggtgaggatggatggtggctacgtcggtaatggcacggtgcgatggagatgtaattattagaaattatggttgggcttaacac 27773004  T
Q  208 aatcccacaaaaccagcttg 227  Q
    ||||||||||||||||||||    
T  27773003 aatcccacaaaaccagcttg 27772984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 27656548 - 27656496
Alignment:
Q  175 gtaattattagaaattatggttgggcttaacacaatcccacaaaaccagcttg 227  Q
    |||| ||||||||||| ||||||||| |||||||| ||||||||||| |||||    
T  27656548 gtaagtattagaaattgtggttgggcctaacacaaccccacaaaaccggcttg 27656496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 8026691 - 8026642
Alignment:
Q  178 attattagaaattatggttgggcttaacacaatcccacaaaaccagcttg 227  Q
    ||||||||||||  ||||||||| |||||||| ||||||||||| |||||    
T  8026691 attattagaaatcgtggttgggcctaacacaaccccacaaaaccggcttg 8026642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 19713035 - 19712990
Alignment:
Q  182 ttagaaattatggttgggcttaacacaatcccacaaaaccagcttg 227  Q
    ||||||||  ||||||||| |||||||||||||||||||| |||||    
T  19713035 ttagaaatggtggttgggcctaacacaatcccacaaaaccggcttg 19712990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 27653302 - 27653261
Alignment:
Q  180 tattagaaattatggttgggcttaacacaatcccacaaaacc 221  Q
    ||||||||||  ||||||||| ||||||||||||||||||||    
T  27653302 tattagaaatcgtggttgggcctaacacaatcccacaaaacc 27653261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 15081906 - 15081954
Alignment:
Q  179 ttattagaaattatggttgggcttaacacaatcccacaaaaccagcttg 227  Q
    |||||||||||  || |||||| |||||||||||||||||||| |||||    
T  15081906 ttattagaaatcgtgtttgggcctaacacaatcccacaaaaccggcttg 15081954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 52650772 - 52650817
Alignment:
Q  182 ttagaaattatggttgggcttaacacaatcccacaaaaccagcttg 227  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||    
T  52650772 ttagaaattatggttgggcctaacacaaccccacaaaaccagcttg 52650817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 51459706 - 51459751
Alignment:
Q  182 ttagaaattatggttgggcttaacacaatcccacaaaaccagcttg 227  Q
    ||||||||| ||||||||| ||| ||||||||||||||||||||||    
T  51459706 ttagaaattgtggttgggcctaatacaatcccacaaaaccagcttg 51459751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 7653559 - 7653515
Alignment:
Q  182 ttagaaattatggttgggcttaacacaatcccacaaaaccagctt 226  Q
    ||||||||| ||||||||| |||||||||||||||||| ||||||    
T  7653559 ttagaaattgtggttgggcctaacacaatcccacaaaatcagctt 7653515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 25137301 - 25137348
Alignment:
Q  179 ttattagaaattatggttgggcttaacacaatcccacaaaaccagctt 226  Q
    |||||||||||| ||||||||| |||||||| ||||||||||| ||||    
T  25137301 ttattagaaattgtggttgggcctaacacaaccccacaaaaccggctt 25137348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 51460443 - 51460481
Alignment:
Q  182 ttagaaattatggttgggcttaacacaatcccacaaaac 220  Q
    ||||||||||||||||||| |||||||| ||||||||||    
T  51460443 ttagaaattatggttgggcctaacacaaccccacaaaac 51460481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 29266036 - 29265991
Alignment:
Q  182 ttagaaattatggttgggcttaacacaatcccacaaaaccagcttg 227  Q
    ||||||||  ||||||||| |||||||| |||||||||||||||||    
T  29266036 ttagaaatcgtggttgggcctaacacaaccccacaaaaccagcttg 29265991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 5509164 - 5509117
Alignment:
Q  180 tattagaaattatggttgggcttaacacaatcccacaaaaccagcttg 227  Q
    |||||||||| |||||||||| |||||||| |||||||||||||||||    
T  5509164 tattagaaatcatggttgggcctaacacaaccccacaaaaccagcttg 5509117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 221
Target Start/End: Original strand, 30701126 - 30701165
Alignment:
Q  182 ttagaaattatggttgggcttaacacaatcccacaaaacc 221  Q
    ||||||||| |||||||||||||||||| |||||||||||    
T  30701126 ttagaaattgtggttgggcttaacacaaccccacaaaacc 30701165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 17854691 - 17854732
Alignment:
Q  180 tattagaaattatggttgggcttaacacaatcccacaaaacc 221  Q
    ||||||||||  ||||||||| ||||||||||||||||||||    
T  17854691 tattagaaatcgtggttgggcctaacacaatcccacaaaacc 17854732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 36993075 - 36993120
Alignment:
Q  182 ttagaaattatggttgggcttaacacaatcccacaaaaccagcttg 227  Q
    |||||||| |||||||||| |||||||| |||||||||||||||||    
T  36993075 ttagaaatcatggttgggcctaacacaaccccacaaaaccagcttg 36993120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 7786255 - 7786299
Alignment:
Q  182 ttagaaattatggttgggcttaacacaatcccacaaaaccagctt 226  Q
    |||||||| |||||||||| |||||||| ||||||||||||||||    
T  7786255 ttagaaatcatggttgggcctaacacaaccccacaaaaccagctt 7786299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 3038085 - 3038130
Alignment:
Q  182 ttagaaattatggttgggcttaacacaatcccacaaaaccagcttg 227  Q
    |||||||| |||||||||| |||||||| ||||||||||| |||||    
T  3038085 ttagaaatcatggttgggcctaacacaaccccacaaaaccggcttg 3038130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 21861377 - 21861332
Alignment:
Q  182 ttagaaattatggttgggcttaacacaatcccacaaaaccagcttg 227  Q
    ||||||||  ||||||||| |||||||||||||||||||| |||||    
T  21861377 ttagaaatggtggttgggcctaacacaatcccacaaaaccggcttg 21861332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 9368678 - 9368633
Alignment:
Q  182 ttagaaattatggttgggcttaacacaatcccacaaaaccagcttg 227  Q
    ||||||||||||||||||| |||||||| ||||||||||| |||||    
T  9368678 ttagaaattatggttgggcctaacacaaccccacaaaaccggcttg 9368633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 8098402 - 8098355
Alignment:
Q  180 tattagaaattatggttgggcttaacacaatcccacaaaaccagcttg 227  Q
    ||||||||||  |||||||||||||||||| ||||||||||| |||||    
T  8098402 tattagaaatcgtggttgggcttaacacaaccccacaaaaccggcttg 8098355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 8287886 - 8287839
Alignment:
Q  180 tattagaaattatggttgggcttaacacaatcccacaaaaccagcttg 227  Q
    ||||||||||| ||||||||| |||||||| ||||||||||| |||||    
T  8287886 tattagaaattgtggttgggcctaacacaaccccacaaaaccggcttg 8287839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 21209920 - 21209967
Alignment:
Q  180 tattagaaattatggttgggcttaacacaatcccacaaaaccagcttg 227  Q
    ||||||||||  |||||||||||||||||| ||||||||||| |||||    
T  21209920 tattagaaatcgtggttgggcttaacacaaccccacaaaaccggcttg 21209967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 8081114 - 8081159
Alignment:
Q  182 ttagaaattatggttgggcttaacacaatcccacaaaaccagcttg 227  Q
    |||||||| |||||||||| |||||||| ||||||||||| |||||    
T  8081114 ttagaaatcatggttgggcctaacacaaccccacaaaaccggcttg 8081159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 15480642 - 15480597
Alignment:
Q  182 ttagaaattatggttgggcttaacacaatcccacaaaaccagcttg 227  Q
    ||||||||| ||||||||| |||||||| ||||||||||| |||||    
T  15480642 ttagaaattgtggttgggcctaacacaaccccacaaaaccggcttg 15480597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 24528623 - 24528578
Alignment:
Q  182 ttagaaattatggttgggcttaacacaatcccacaaaaccagcttg 227  Q
    |||||||| |||||||||| |||||||| ||||||||||| |||||    
T  24528623 ttagaaatcatggttgggcctaacacaaccccacaaaaccggcttg 24528578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 28073182 - 28073227
Alignment:
Q  182 ttagaaattatggttgggcttaacacaatcccacaaaaccagcttg 227  Q
    ||||||||| ||||||||| |||||||| |||||||||||||||||    
T  28073182 ttagaaattgtggttgggcctaacacaaccccacaaaaccagcttg 28073227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 20822058 - 20822011
Alignment:
Q  180 tattagaaattatggttgggcttaacacaatcccacaaaaccagcttg 227  Q
    ||||||||||  ||||||||| |||||||||||||||||||| |||||    
T  20822058 tattagaaatcgtggttgggcctaacacaatcccacaaaaccggcttg 20822011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 53814673 - 53814720
Alignment:
Q  180 tattagaaattatggttgggcttaacacaatcccacaaaaccagcttg 227  Q
    ||||||||||  ||||||||| |||||||||||||||||||| |||||    
T  53814673 tattagaaatcgtggttgggcctaacacaatcccacaaaaccggcttg 53814720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 21498882 - 21498833
Alignment:
Q  178 attattagaaattatggttgggcttaacacaatcccacaaaaccagcttg 227  Q
    ||||||||||||  ||||||||| |||||||| ||||||||||| |||||    
T  21498882 attattagaaatcgtggttgggcctaacacaaccccacaaaaccggcttg 21498833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 21685081 - 21685044
Alignment:
Q  182 ttagaaattatggttgggcttaacacaatcccacaaaa 219  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  21685081 ttagaaattgtggttgggcttaacacaaccccacaaaa 21685044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 39902564 - 39902609
Alignment:
Q  182 ttagaaattatggttgggcttaacacaatcccacaaaaccagcttg 227  Q
    ||||||||  ||||||||| |||||||| |||||||||||||||||    
T  39902564 ttagaaatggtggttgggcctaacacaaccccacaaaaccagcttg 39902609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 52559650 - 52559605
Alignment:
Q  182 ttagaaattatggttgggcttaacacaatcccacaaaaccagcttg 227  Q
    |||||||| |||||||||| |||||||| ||||||||||| |||||    
T  52559650 ttagaaatcatggttgggcctaacacaaccccacaaaaccggcttg 52559605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 53814928 - 53814969
Alignment:
Q  180 tattagaaattatggttgggcttaacacaatcccacaaaacc 221  Q
    ||||||||||  |||||||||||||||||| |||||||||||    
T  53814928 tattagaaatcgtggttgggcttaacacaaccccacaaaacc 53814969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 4963439 - 4963392
Alignment:
Q  180 tattagaaattatggttgggcttaacacaatcccacaaaaccagcttg 227  Q
    ||||||||||| ||||||||| |||||||| ||||||||||| |||||    
T  4963439 tattagaaattgtggttgggcctaacacaaccccacaaaaccggcttg 4963392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 19256577 - 19256632
Alignment:
Q  172 gatgtaattattagaaattatggttgggcttaacacaatcccacaaaaccagcttg 227  Q
    |||||| |||||||||||  ||||||||| |||||||| ||||||||||| |||||    
T  19256577 gatgtagttattagaaatcgtggttgggcctaacacaaccccacaaaaccggcttg 19256632  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 10615157 - 10615202
Alignment:
Q  182 ttagaaattatggttgggcttaacacaatcccacaaaaccagcttg 227  Q
    ||||||||| |||||||||||||| ||| |||||||||| ||||||    
T  10615157 ttagaaattgtggttgggcttaacgcaaccccacaaaactagcttg 10615202  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 22638180 - 22638225
Alignment:
Q  182 ttagaaattatggttgggcttaacacaatcccacaaaaccagcttg 227  Q
    ||||||||  |||||||||||||||||| ||||||||||| |||||    
T  22638180 ttagaaatcgtggttgggcttaacacaaccccacaaaaccggcttg 22638225  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 24532422 - 24532467
Alignment:
Q  182 ttagaaattatggttgggcttaacacaatcccacaaaaccagcttg 227  Q
    |||||||| |||||||||| |||||||| ||||||||||| |||||    
T  24532422 ttagaaatcatggttgggcctaacacaaccccacaaaaccggcttg 24532467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 38476121 - 38476076
Alignment:
Q  182 ttagaaattatggttgggcttaacacaatcccacaaaaccagcttg 227  Q
    ||||||||| ||||||||| ||||| |||||||||||||| |||||    
T  38476121 ttagaaattgtggttgggcctaacataatcccacaaaaccggcttg 38476076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 227
Target Start/End: Complemental strand, 4828375 - 4828331
Alignment:
Q  183 tagaaattatggttgggcttaacacaatcccacaaaaccagcttg 227  Q
    |||||||| ||||||||| |||||||| ||||||||||| |||||    
T  4828375 tagaaattgtggttgggcctaacacaaccccacaaaaccggcttg 4828331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 12317129 - 12317085
Alignment:
Q  182 ttagaaattatggttgggcttaacacaatcccacaaaaccagctt 226  Q
    ||||||||  ||||||||| |||||||||||||||||| ||||||    
T  12317129 ttagaaatcgtggttgggcctaacacaatcccacaaaatcagctt 12317085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 26800514 - 26800558
Alignment:
Q  183 tagaaattatggttgggcttaacacaatcccacaaaaccagcttg 227  Q
    |||||||| ||||||||| |||||||| ||||||||||| |||||    
T  26800514 tagaaattgtggttgggcctaacacaaccccacaaaaccggcttg 26800558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 34653236 - 34653188
Alignment:
Q  179 ttattagaaattatggttgggcttaacacaatcccacaaaaccagcttg 227  Q
    |||||||||||  ||||||||| |||||||| ||||||||||| |||||    
T  34653236 ttattagaaatcgtggttgggcctaacacaaccccacaaaaccggcttg 34653188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 9273046 - 9272999
Alignment:
Q  180 tattagaaattatggttgggcttaacacaatcccacaaaaccagcttg 227  Q
    ||||||||||  |||||||||||||||||| ||||||||||| |||||    
T  9273046 tattagaaatggtggttgggcttaacacaaccccacaaaaccggcttg 9272999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 20327848 - 20327895
Alignment:
Q  180 tattagaaattatggttgggcttaacacaatcccacaaaaccagcttg 227  Q
    |||||||||| |||||||||| |||||||| ||||||||||| |||||    
T  20327848 tattagaaatcatggttgggcctaacacaaccccacaaaaccggcttg 20327895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 7697399 - 7697444
Alignment:
Q  182 ttagaaattatggttgggcttaacacaatcccacaaaaccagcttg 227  Q
    ||||||||| ||||| ||| |||||||| |||||||||||||||||    
T  7697399 ttagaaattgtggttaggcctaacacaaccccacaaaaccagcttg 7697444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 8019051 - 8019006
Alignment:
Q  182 ttagaaattatggttgggcttaacacaatcccacaaaaccagcttg 227  Q
    ||||||||| ||||||||| |||||||| ||||||||||| |||||    
T  8019051 ttagaaattgtggttgggcctaacacaaccccacaaaaccggcttg 8019006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 16239674 - 16239629
Alignment:
Q  182 ttagaaattatggttgggcttaacacaatcccacaaaaccagcttg 227  Q
    ||||||||  ||||||||| |||||||||||||||||||| |||||    
T  16239674 ttagaaatcgtggttgggcctaacacaatcccacaaaaccggcttg 16239629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 33640128 - 33640083
Alignment:
Q  182 ttagaaattatggttgggcttaacacaatcccacaaaaccagcttg 227  Q
    ||||||||| || |||||| |||||||||||||||||||| |||||    
T  33640128 ttagaaattgtgattgggcctaacacaatcccacaaaaccggcttg 33640083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 45828329 - 45828284
Alignment:
Q  182 ttagaaattatggttgggcttaacacaatcccacaaaaccagcttg 227  Q
    |||||||| |||||||||| |||||||| ||||||||||| |||||    
T  45828329 ttagaaatcatggttgggcctaacacaaccccacaaaacctgcttg 45828284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 47702410 - 47702455
Alignment:
Q  182 ttagaaattatggttgggcttaacacaatcccacaaaaccagcttg 227  Q
    ||||||||  ||||||||| |||||||| |||||||||||||||||    
T  47702410 ttagaaatcgtggttgggcctaacacaaccccacaaaaccagcttg 47702455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 13574920 - 13574960
Alignment:
Q  180 tattagaaattatggttgggcttaacacaatcccacaaaac 220  Q
    ||||||||||| ||||||||| |||||||| ||||||||||    
T  13574920 tattagaaattgtggttgggcctaacacaaccccacaaaac 13574960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0692 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 5545 - 5590
Alignment:
Q  182 ttagaaattatggttgggcttaacacaatcccacaaaaccagcttg 227  Q
    ||||||||||||||||||| |||||||| ||| ||||||| |||||    
T  5545 ttagaaattatggttgggcctaacacaaccccgcaaaaccggcttg 5590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 21022 - 20977
Alignment:
Q  182 ttagaaattatggttgggcttaacacaatcccacaaaaccagcttg 227  Q
    ||||||||  |||||||||||||||||| ||||||||||| |||||    
T  21022 ttagaaatcgtggttgggcttaacacaaccccacaaaaccggcttg 20977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 288658 - 288703
Alignment:
Q  182 ttagaaattatggttgggcttaacacaatcccacaaaaccagcttg 227  Q
    |||||||| |||||||||| ||||||||  ||||||||||||||||    
T  288658 ttagaaatcatggttgggcctaacacaactccacaaaaccagcttg 288703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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