View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4793-Insertion-3 (Length: 871)
Name: NF4793-Insertion-3
Description: NF4793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4793-Insertion-3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 715; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 715; E-Value: 0
Query Start/End: Original strand, 59 - 832
Target Start/End: Original strand, 34448224 - 34448997
Alignment:
| Q |
59 |
tagtttgaattatcaatacaacaataaaaacgattcacgatcaaggaaaaacagattgattaacatgtaaaatagccacttattataactgatcttgctt |
158 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
34448224 |
tagtttgaattatcaatacaacaataaaaacgattcacgatcaaggaaaaacagaaggattaaaatgtaaaatagccacttattataactgatcttgctt |
34448323 |
T |
|
| Q |
159 |
cttctactcactttgctcgatgcttataggatccacaagtagtgcaacaatgtaatcttttagcagttctggttttgtgtatttatcctcaaagttttcg |
258 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34448324 |
cttctactcacttagctcgatgcttataggatccacaagtagtgcaacaatgtaatcttttagcagttctggttttgtgtatttatcctcaaagttttcg |
34448423 |
T |
|
| Q |
259 |
tatgcaaactcagtcactcgcgccacattcataataaattcaagcactggtcttgggatgttgtctaacttgagacactcttcattcatgaccttccaat |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34448424 |
tatgcaaactcagtcactcgcgccacattcataataaattcaagcactggtcttgggatgttgtctaacttgagacactcttcattcatgaccttccaat |
34448523 |
T |
|
| Q |
359 |
aattctcgatttccttgcgaatgaagttataagcctcttctcctgacatgtcatattgcttcatgcaacattccactgcagaagcaacatgcactctttc |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34448524 |
aattctcgatttccttgcgaatgaagttataagcctcttctcctgacatgtcatattgcttcatgcaacattccactgcagaagcaacatgcactctttc |
34448623 |
T |
|
| Q |
459 |
ttgctcaaactataaataaagcaaatacaaaaatatgtatacttcagttttgttagatactttcgatgtactttcatatgcagatacaaaatatgcagta |
558 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34448624 |
ttgctcaaactataaataaagcaaatacaaaaacatgtatacttcagttttgtaagatactttcgatgtactttcatatgcagatacaaaatatgcagta |
34448723 |
T |
|
| Q |
559 |
ccttatgtgaggatatgtcatccgcgagtctaccatgagccgatatagcatcgatgattgttggatagctgaaaatccaatcgagaatctcgtcgtttga |
658 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
34448724 |
ccttatgtgaggatatgtcatccgcgagtctaccatgagccgatatagcatcgatgattgttggatagttgaaaatccaatcgagaatctcgtcgtttga |
34448823 |
T |
|
| Q |
659 |
aaattctccaagtccaataaaagataatatttgaagtgggtatgaagaagatatagatccattagccttgtattcatcatatgttggaatatatccttca |
758 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34448824 |
aaattctccaagtccaataaaagataatatttgaagcgggtatgaagaagatatagatccattagccttgtattcatcatatgttggaatatatccttca |
34448923 |
T |
|
| Q |
759 |
ctgcaccattttga-tcagcaaagtagggatcgtgccaatttgtaaaactggtaattaatgaaaatattgatcaa |
832 |
Q |
| |
|
|||||||||||||| ||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34448924 |
ctgcaccattttgattcaacaaagta-ggatcgtgccaatttgtaaaactgtaaattaatgaaaatattgatcaa |
34448997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 127 - 478
Target Start/End: Original strand, 34459525 - 34459876
Alignment:
| Q |
127 |
aaaatagccacttattataactgatcttgcttcttctactcactttgctcgatgcttataggatccacaagtagtgcaacaatgtaatcttttagcagtt |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||| |||||| ||||||||||||| ||||| | |
|
|
| T |
34459525 |
aaaatagccacttattataactgatcttgcttcttctactcgcattgctcgatgcttataggatctacaagcagtgcagcaatgtaatctttgagcagat |
34459624 |
T |
|
| Q |
227 |
ctggttttgtgtatttatcctcaaagttttcgtatgcaaactcagtcactcgcgccacattcataataaattcaagcactggtcttgggatgttgtctaa |
326 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||| || | ||| ||||||| | ||| | |||| ||||||||||||| ||||| |||| || ||| |
|
|
| T |
34459625 |
ctggatttgtgtatttatcctcaaagtcttcgtatatgaagtgagttcctcgcgcaaaattaagaatacattcaagcactggccttggaatgtggtgtaa |
34459724 |
T |
|
| Q |
327 |
cttgagacactcttcattcatgaccttccaataattctcgatttccttgcgaatgaagttataagcctcttctcctgacatgtcatattgcttcatgcaa |
426 |
Q |
| |
|
|| || |||||||||||||| || |||| ||| || || |||||| |||||| ||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
34459725 |
ttttaggcactcttcattcataactctccataaatcttcaatctccttgagaatgagtttataagcctcttcttgtgatatgtcatattgcttcatgcaa |
34459824 |
T |
|
| Q |
427 |
cattccactgcagaagcaacatgcactctttcttgctcaaactataaataaa |
478 |
Q |
| |
|
|| || |||||||| ||||||||||| ||||| |||||||||| |||||||| |
|
|
| T |
34459825 |
caatcaactgcagaggcaacatgcaccctttcgtgctcaaactgtaaataaa |
34459876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 131 - 347
Target Start/End: Original strand, 34483660 - 34483876
Alignment:
| Q |
131 |
tagccacttattataactgatcttgcttcttctactcactttgctcgatgcttataggatccacaagtagtgcaacaatgtaatcttttagcagttctgg |
230 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||| | ||||||||| ||||||||||| | |||||||||||||||||||||||| | |||||||| |
|
|
| T |
34483660 |
tagccacttattataattgattttgcttcttctacttgcattgctcgattcttataggatctataagtagtgcaacaatgtaatctttcatcagttctgc |
34483759 |
T |
|
| Q |
231 |
ttttgtgtatttatcctcaaagttttcgtatgcaaactcagtcactcgcgccacattcataataaattcaagcactggtcttgggatgttgtctaacttg |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| || | ||| |||||||| | ||||| ||||||||| | ||||| ||||| |||| |||| |
|
|
| T |
34483760 |
ttttgtgtatttatcctcaaagttttcgtatgtgaactctgttattcgtgccacattaagaataatttcaagcaccgaccttggaatgttttctatcttg |
34483859 |
T |
|
| Q |
331 |
agacactcttcattcat |
347 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
34483860 |
aggcactcttcattcat |
34483876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 557 - 824
Target Start/End: Original strand, 34485308 - 34485575
Alignment:
| Q |
557 |
taccttatgtgaggatatgtcatccgcgagtctaccatgagccgatatagcatcgatgattgttggatagctgaaaatccaatcgagaatctcgtcgttt |
656 |
Q |
| |
|
|||||||||||||||||||||||| || ||||| ||| ||| |||| ||| ||||||||| |||| | || || |||||||| | | ||| | |||| |
|
|
| T |
34485308 |
taccttatgtgaggatatgtcatctgctagtctgccaatagctgatacagcctcgatgatttttgggtcactaaagatccaatcaaacaactctttgttt |
34485407 |
T |
|
| Q |
657 |
gaaaattctccaagtccaataaaagataatatttgaagtgggtatgaagaagatatagatccattagccttgtattcatcatatgttggaatatatcctt |
756 |
Q |
| |
|
||||||||||||| || | |||| |||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
34485408 |
gaaaattctccaaaccctagaaaacttaatatttgaagtgggagtgtagaagatataattccattagccttgtattcatcatatgttggaataaatcctt |
34485507 |
T |
|
| Q |
757 |
cactgcaccattttg-atcagcaaagtagggatcgtgccaatttgtaaaactggtaattaatgaaaata |
824 |
Q |
| |
|
|| |||||||||||| ||| | ||||| |||| |||||| ||| |||||||| ||||||| |||||| |
|
|
| T |
34485508 |
cattgcaccattttgtttcaaccaagta-ggattgtgccagtttataaaactgtaaattaatcaaaata |
34485575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 232 - 469
Target Start/End: Original strand, 34473669 - 34473906
Alignment:
| Q |
232 |
tttgtgtatttatcctcaaagttttcgtatgcaaactcagtcactcgcgccacattcataataaattcaagcactggtcttgggatgttgtctaacttga |
331 |
Q |
| |
|
||||||||||||||||| |||||||||| | ||||| || | ||| |||||||| | |||| |||||||||| || | ||||||| ||||||||||| |
|
|
| T |
34473669 |
tttgtgtatttatcctcgtagttttcgtaggtgaactcggttattcgtgccacattaagaatacattcaagcacagggttggggatgtagtctaacttga |
34473768 |
T |
|
| Q |
332 |
gacactcttcattcatgaccttccaataattctcgatttccttgcgaatgaagttataagcctcttctcctgacatgtcatattgcttcatgcaacattc |
431 |
Q |
| |
|
| |||||||||| || || ||||| ||| || || |||||| |||| ||||| ||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
34473769 |
ggaactcttcatttatatccatccaaaaatcttcaatgtccttgttaatgtgcttataggcctcttcttgtgacatgttgtattgcttcatgcaacattc |
34473868 |
T |
|
| Q |
432 |
cactgcagaagcaacatgcactctttcttgctcaaact |
469 |
Q |
| |
|
||||| | |||||||||||| |||| |||||||||| |
|
|
| T |
34473869 |
aactgctgcagcaacatgcaccctttgctgctcaaact |
34473906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 555 - 829
Target Start/End: Original strand, 34473990 - 34474264
Alignment:
| Q |
555 |
agtaccttatgtgaggatatgtcatccgcgagtctaccatgagccgatatagcatcgatgattgttggatagctgaaaatccaatcgagaatctcgtcgt |
654 |
Q |
| |
|
||||| ||||| ||||||| |||||||||||||| ||| ||| |||| ||||| | ||||||||| | ||| ||| |||||| || | ||| || | |
|
|
| T |
34473990 |
agtactttatgcgaggatacatcatccgcgagtctgccaatagctgatacagcattaacgattgttggttcactggaaagccaatcaagcaactcttcat |
34474089 |
T |
|
| Q |
655 |
ttgaaaattctccaagtccaataaaagataatatttgaagtgggtatgaagaagatatagatccattagccttgtattcatcatatgttggaatatatcc |
754 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||| ||||||| || |||||||||| ||||||||| || ||||||||||||||||| ||| ||| |
|
|
| T |
34474090 |
ttgaaaattctccaagtccaacgaaagatattattgaaagtgggattgtagaagatataagtccattagctttatattcatcatatgttggtataattcc |
34474189 |
T |
|
| Q |
755 |
ttcactgcaccattttg-atcagcaaagtagggatcgtgccaatttgtaaaactggtaattaatgaaaatattgat |
829 |
Q |
| |
|
|||| ||| |||||| | || | ||||| |||| |||||||||| || ||||| ||||||| ||||||||||| |
|
|
| T |
34474190 |
ttcattgccccatttagtttccaccaagta-ggattgtgccaatttatagaactgtaaattaatcaaaatattgat |
34474264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 34447757 - 34447812
Alignment:
| Q |
12 |
caaatgtaatagtacaaaggttatttatatttcgaattgtggcattatagtttgaa |
67 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
34447757 |
caaatgcaatagtacaaaggtaatttatatttcaaattgtggcattatagtttgaa |
34447812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 715 - 835
Target Start/End: Original strand, 34460206 - 34460326
Alignment:
| Q |
715 |
atccattagccttgtattcatcatatgttggaatatatccttcactgcaccattttg-atcagcaaagtagggatcgtgccaatttgtaaaactggtaat |
813 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| | |||||||||||| ||| | || || || |||||||| ||| |||||||| || |
|
|
| T |
34460206 |
atccattaaccttgtattcatcatatgttggaatatatcctgctttgcaccattttgcttcaaccaaata-ggctcgtgccactttataaaactgaaaac |
34460304 |
T |
|
| Q |
814 |
taatgaaaatattgatcaataa |
835 |
Q |
| |
|
||| ||||||||||||||||| |
|
|
| T |
34460305 |
aaataaaaatattgatcaataa |
34460326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 439 - 481
Target Start/End: Original strand, 34483935 - 34483977
Alignment:
| Q |
439 |
gaagcaacatgcactctttcttgctcaaactataaataaagca |
481 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34483935 |
gaagcaacatgcactctttgctgctcaaactataaataaagca |
34483977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 5e-52; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 127 - 479
Target Start/End: Complemental strand, 6132505 - 6132153
Alignment:
| Q |
127 |
aaaatagccacttattataactgatcttgcttcttctactcactttgctcgatgcttataggatccacaagtagtgcaacaatgtaatcttttagcagtt |
226 |
Q |
| |
|
|||| ||||||||||||||||| || ||||||| ||| |||| || || ||||||||||| | | || ||| ||||||||| ||||| |||| || |
|
|
| T |
6132505 |
aaaagagccacttattataactaattttgcttcacctattcacatttctaaatgcttataggttttagaatcagtttaacaatgtagtctttcagcaatt |
6132406 |
T |
|
| Q |
227 |
ctggttttgtgtatttatcctcaaagttttcgtatgcaaactcagtcactcgcgccacattcataataaattcaagcactggtcttgggatgttgtctaa |
326 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| ||||| | |||||||||||||| | |||| ||| | |||||| ||||||||| |||||| |
|
|
| T |
6132405 |
ccccatttgtgtatttatcctcaaagttttcgtatgtgaactcggctactcgcgccacattaacaatactttcgaccactgggcttgggatgcagtctaa |
6132306 |
T |
|
| Q |
327 |
cttgagacactcttcattcatgaccttccaataattctcgatttccttgcgaatgaagttataagcctcttctcctgacatgtcatattgcttcatgcaa |
426 |
Q |
| |
|
|||||||||||||||||||| || ||||||||| ||||| || || |||||| || ||||| || ||| |||||| |||||||||||||||||| |
|
|
| T |
6132305 |
tttgagacactcttcattcataactatccaataatcttcgatctctttcagaatgagtttgtaagcttcctcttgtgacatatcatattgcttcatgcaa |
6132206 |
T |
|
| Q |
427 |
cattccactgcagaagcaacatgcactctttcttgctcaaactataaataaag |
479 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||||| |||| |||| |
|
|
| T |
6132205 |
cattcaactgcagaagcaacatgcactctttgctgctcaaactgtaaacaaag |
6132153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 557 - 771
Target Start/End: Complemental strand, 6131418 - 6131203
Alignment:
| Q |
557 |
taccttatgtgaggatatgtcatccgcgagtctaccatgagccgatatagcatcgatgattgttggatagctgaaaatccaatcgagaatctcgtcgttt |
656 |
Q |
| |
|
|||||||||||||||| ||||||| | ||||||| || ||| | | ||||| |||||||||||| | ||||||||||||||| || | ||| | |||| |
|
|
| T |
6131418 |
taccttatgtgaggatttgtcatcggtgagtctagcaatagctgctgcagcattgatgattgttgggtcgctgaaaatccaatcaagtaactctttgttt |
6131319 |
T |
|
| Q |
657 |
gaaaattctccaagtccaataaaagataat-atttgaagtgggtatgaagaagatatagatccattagccttgtattcatcatatgttggaatatatcct |
755 |
Q |
| |
|
|||||||||||||| |||| |||||||| | | |||||||| | || |||||||||| ||||||||| |||||||||| || ||||||||| ||||| |
|
|
| T |
6131318 |
gaaaattctccaagaccaagaaaagatagtaagttgaagtgagagtgtagaagatataattccattagctttgtattcattgtaagttggaataaatcct |
6131219 |
T |
|
| Q |
756 |
tcactgcaccattttg |
771 |
Q |
| |
|
||| |||||||||||| |
|
|
| T |
6131218 |
tcattgcaccattttg |
6131203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 404 - 446
Target Start/End: Complemental strand, 6135884 - 6135842
Alignment:
| Q |
404 |
acatgtcatattgcttcatgcaacattccactgcagaagcaac |
446 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
6135884 |
acatgtcatattgcttcatgcaacattcaactgtagaagcaac |
6135842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 297 - 347
Target Start/End: Complemental strand, 6135986 - 6135936
Alignment:
| Q |
297 |
ttcaagcactggtcttgggatgttgtctaacttgagacactcttcattcat |
347 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||| |||||||||||||| |
|
|
| T |
6135986 |
ttcaagcactggtcttggtatgcaatctaacttgaggcactcttcattcat |
6135936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 385 - 469
Target Start/End: Original strand, 1593287 - 1593371
Alignment:
| Q |
385 |
ttataagcctcttctcctgacatgtcatattgcttcatgcaacattccactgcagaagcaacatgcactctttcttgctcaaact |
469 |
Q |
| |
|
||||| || |||||| |||||||| ||||||||||||||||| || ||||| |||||||||||| | |||| ||||||||||| |
|
|
| T |
1593287 |
ttatatgcatcttctggtgacatgttgtattgcttcatgcaacactcaactgctgaagcaacatgctccctttgttgctcaaact |
1593371 |
T |
|
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