View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4793-Insertion-30 (Length: 160)
Name: NF4793-Insertion-30
Description: NF4793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4793-Insertion-30 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 134; Significance: 5e-70; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 5e-70
Query Start/End: Original strand, 8 - 160
Target Start/End: Complemental strand, 11544362 - 11544209
Alignment:
| Q |
8 |
ctttgaagctccttaatccagctttcagctccatataaattatagtcgccaacaagatctctatacacataatgtgtatggatcttatcttcca-ttcca |
106 |
Q |
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| T |
11544362 |
ctttgaagctccttaatccagctttcagctccatataaattatagttcccaacaagatctctatacacgtaatgtgtatggatcttatcttccacttcca |
11544263 |
T |
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| Q |
107 |
catgttcaacccaagtgacctaacataaaacatgtaataatatcttgtgttgag |
160 |
Q |
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| T |
11544262 |
catgttcaacccaagtgacctaacataaaacatgtaataatatcttgtgttgag |
11544209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 8 - 160
Target Start/End: Complemental strand, 11557783 - 11557630
Alignment:
| Q |
8 |
ctttgaagctccttaatccagctttcagctccatataaattatagtcgccaacaagatctctatacacataatgtgtatggatcttatcttcca-ttcca |
106 |
Q |
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| T |
11557783 |
ctttgaagctccttaatccagctttcagctccatataaattatattcaccaacaagatctctatacacgtaatgtgtatggatcttatcttccacttcca |
11557684 |
T |
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| Q |
107 |
catgttcaacccaagtgacctaacataaaacatgtaataatatcttgtgttgag |
160 |
Q |
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| T |
11557683 |
catgttcaacccaagtgacctaacataaaacatgtaataatatcttttgttgag |
11557630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 80 - 160
Target Start/End: Original strand, 22823070 - 22823151
Alignment:
| Q |
80 |
tgtgtatggatcttatcttcca-ttccacatgttcaacccaagtgacctaacataaaacatgtaataatatcttgtgttgag |
160 |
Q |
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| T |
22823070 |
tgtgtatggatcttatcttccacttccacatgttcaacccaagtgacctaccataaaacatgtaataatatcttttgttgag |
22823151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 80 - 160
Target Start/End: Original strand, 22831876 - 22831957
Alignment:
| Q |
80 |
tgtgtatggatcttatcttcca-ttccacatgttcaacccaagtgacctaacataaaacatgtaataatatcttgtgttgag |
160 |
Q |
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| T |
22831876 |
tgtgtatggatcttatcttccacttccacatgttcaacccgagtgacctaacataaaacatgtattaatatcttttgttgag |
22831957 |
T |
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