View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4793-Insertion-5 (Length: 865)

Name: NF4793-Insertion-5
Description: NF4793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4793-Insertion-5
NF4793-Insertion-5
[»] scaffold0004 (3 HSPs)
scaffold0004 (277-662)||(376559-376943)
scaffold0004 (8-198)||(376367-376557)
scaffold0004 (484-550)||(370102-370167)
[»] chr4 (10 HSPs)
chr4 (457-662)||(11889642-11889843)
chr4 (454-662)||(14632907-14633110)
chr4 (454-662)||(12810140-12810344)
chr4 (457-553)||(10070337-10070433)
chr4 (566-662)||(18558566-18558661)
chr4 (736-810)||(29120571-29120648)
chr4 (736-768)||(14905154-14905186)
chr4 (735-777)||(12599993-12600036)
chr4 (735-810)||(16631642-16631720)
chr4 (736-777)||(24628726-24628768)
[»] chr5 (16 HSPs)
chr5 (457-654)||(22010842-22011036)
chr5 (460-656)||(25769499-25769692)
chr5 (457-662)||(22969609-22969807)
chr5 (456-656)||(36196831-36197029)
chr5 (454-553)||(24924292-24924392)
chr5 (453-553)||(16470356-16470454)
chr5 (566-662)||(25369030-25369124)
chr5 (457-550)||(16075308-16075399)
chr5 (457-525)||(17810994-17811062)
chr5 (484-550)||(17987249-17987314)
chr5 (735-810)||(22000881-22000958)
chr5 (454-524)||(23779411-23779480)
chr5 (454-524)||(23866364-23866433)
chr5 (735-777)||(31487448-31487491)
chr5 (736-777)||(7746551-7746593)
chr5 (735-768)||(42242857-42242890)
[»] chr2 (26 HSPs)
chr2 (456-662)||(25576435-25576636)
chr2 (454-662)||(23780416-23780616)
chr2 (454-656)||(27861162-27861359)
chr2 (454-660)||(22801344-22801544)
chr2 (465-656)||(28141454-28141642)
chr2 (454-553)||(27598038-27598138)
chr2 (461-645)||(28144236-28144417)
chr2 (467-553)||(13821702-13821790)
chr2 (457-662)||(27190200-27190402)
chr2 (457-662)||(27840014-27840216)
chr2 (735-810)||(24778536-24778614)
chr2 (457-553)||(20478555-20478652)
chr2 (457-550)||(25568756-25568847)
chr2 (736-768)||(28712524-28712556)
chr2 (735-777)||(20569566-20569609)
chr2 (735-777)||(40780549-40780592)
chr2 (736-777)||(24851490-24851532)
chr2 (736-777)||(25188642-25188684)
chr2 (736-777)||(39038458-39038500)
chr2 (735-768)||(10010567-10010600)
chr2 (457-550)||(11323467-11323558)
chr2 (736-810)||(22455777-22455854)
chr2 (735-768)||(24575282-24575315)
chr2 (633-662)||(25568653-25568682)
chr2 (735-768)||(28702041-28702074)
chr2 (735-768)||(38630999-38631032)
[»] chr6 (25 HSPs)
chr6 (459-662)||(17863419-17863618)
chr6 (457-662)||(12410300-12410501)
chr6 (456-662)||(20194547-20194748)
chr6 (456-662)||(22088570-22088771)
chr6 (453-660)||(21375824-21376027)
chr6 (513-662)||(7391275-7391420)
chr6 (457-662)||(34500977-34501174)
chr6 (467-552)||(25945605-25945691)
chr6 (452-553)||(31137588-31137690)
chr6 (484-528)||(23010773-23010817)
chr6 (735-810)||(17380768-17380846)
chr6 (456-526)||(15966268-15966340)
chr6 (488-553)||(18560540-18560605)
chr6 (736-810)||(21624297-21624374)
chr6 (579-662)||(23590934-23591014)
chr6 (454-550)||(18376740-18376834)
chr6 (736-810)||(19687939-19688015)
chr6 (735-777)||(15301458-15301501)
chr6 (735-777)||(25593311-25593354)
chr6 (628-662)||(18560435-18560469)
chr6 (492-550)||(23591042-23591099)
chr6 (485-550)||(12418065-12418129)
chr6 (485-550)||(12421517-12421581)
chr6 (735-768)||(13601417-13601450)
chr6 (571-658)||(23010648-23010732)
[»] chr7 (28 HSPs)
chr7 (453-662)||(17881253-17881459)
chr7 (454-656)||(17115084-17115283)
chr7 (515-662)||(10310180-10310323)
chr7 (456-550)||(20923114-20923208)
chr7 (468-553)||(18098548-18098634)
chr7 (456-543)||(21668548-21668636)
chr7 (454-525)||(7965587-7965658)
chr7 (486-662)||(9560613-9560785)
chr7 (477-553)||(12330731-12330808)
chr7 (457-550)||(15124890-15124981)
chr7 (735-777)||(2914531-2914573)
chr7 (487-662)||(14960946-14961118)
chr7 (487-662)||(15390418-15390590)
chr7 (736-810)||(30025139-30025216)
chr7 (454-528)||(7404794-7404867)
chr7 (454-528)||(17139889-17139962)
chr7 (735-810)||(33604110-33604187)
chr7 (735-779)||(9068998-9069043)
chr7 (736-810)||(13138801-13138878)
chr7 (735-777)||(13261550-13261593)
chr7 (735-777)||(13681535-13681578)
chr7 (735-777)||(16315412-16315455)
chr7 (571-658)||(17132395-17132480)
chr7 (736-777)||(4493784-4493826)
chr7 (736-777)||(13473363-13473405)
chr7 (735-768)||(10884045-10884078)
chr7 (736-810)||(16557486-16557562)
chr7 (736-810)||(16608100-16608176)
[»] scaffold0005 (1 HSPs)
scaffold0005 (454-662)||(184182-184385)
[»] chr3 (11 HSPs)
chr3 (457-661)||(16226850-16227049)
chr3 (454-662)||(22928244-22928446)
chr3 (452-659)||(13908464-13908666)
chr3 (457-661)||(16224251-16224449)
chr3 (736-768)||(49554383-49554415)
chr3 (735-777)||(16659433-16659476)
chr3 (738-777)||(41494245-41494284)
chr3 (454-528)||(16925215-16925288)
chr3 (736-777)||(29952310-29952352)
chr3 (736-777)||(30001464-30001506)
chr3 (736-810)||(14954618-14954694)
[»] scaffold0009 (2 HSPs)
scaffold0009 (456-662)||(50127-50331)
scaffold0009 (456-662)||(222396-222596)
[»] scaffold0056 (1 HSPs)
scaffold0056 (457-662)||(20649-20849)
[»] chr8 (23 HSPs)
chr8 (483-642)||(21301515-21301670)
chr8 (455-614)||(23242058-23242213)
chr8 (454-660)||(17983106-17983308)
chr8 (457-662)||(24093383-24093582)
chr8 (466-662)||(23817915-23818108)
chr8 (510-662)||(12149458-12149605)
chr8 (488-552)||(9006710-9006775)
chr8 (593-662)||(21301762-21301831)
chr8 (601-662)||(21301897-21301958)
chr8 (466-551)||(921428-921514)
chr8 (488-550)||(15927747-15927809)
chr8 (454-550)||(22263735-22263829)
chr8 (484-550)||(22814916-22814981)
chr8 (572-662)||(9006792-9006880)
chr8 (484-528)||(24478090-24478134)
chr8 (454-542)||(12669075-12669165)
chr8 (735-777)||(16682126-16682169)
chr8 (735-777)||(17007545-17007588)
chr8 (735-777)||(25163306-25163349)
chr8 (735-768)||(17541362-17541395)
chr8 (736-810)||(18122006-18122082)
chr8 (735-768)||(19153269-19153302)
chr8 (735-768)||(30422303-30422336)
[»] scaffold0210 (3 HSPs)
scaffold0210 (454-656)||(18011-18209)
scaffold0210 (454-656)||(25903-26101)
scaffold0210 (736-777)||(863-905)
[»] chr1 (13 HSPs)
chr1 (454-662)||(18523120-18523324)
chr1 (454-615)||(25401485-25401646)
chr1 (567-662)||(22533879-22533973)
chr1 (485-544)||(20886343-20886402)
chr1 (466-662)||(10158977-10159170)
chr1 (579-662)||(21291169-21291249)
chr1 (454-528)||(21291299-21291372)
chr1 (470-550)||(4599315-4599393)
chr1 (484-528)||(20146775-20146819)
chr1 (736-777)||(20959827-20959869)
chr1 (736-777)||(22428135-22428177)
chr1 (488-526)||(25400435-25400473)
chr1 (501-550)||(33129239-33129287)
[»] scaffold0031 (1 HSPs)
scaffold0031 (454-662)||(38085-38291)
[»] scaffold0059 (1 HSPs)
scaffold0059 (572-662)||(29133-29222)
[»] scaffold0338 (1 HSPs)
scaffold0338 (457-553)||(16982-17079)
[»] scaffold0115 (1 HSPs)
scaffold0115 (735-775)||(17576-17616)
[»] scaffold0054 (1 HSPs)
scaffold0054 (454-550)||(77200-77294)
[»] scaffold0567 (1 HSPs)
scaffold0567 (735-777)||(9140-9183)
[»] scaffold0163 (1 HSPs)
scaffold0163 (735-777)||(25670-25713)
[»] scaffold0088 (1 HSPs)
scaffold0088 (488-546)||(40486-40542)
[»] scaffold0479 (1 HSPs)
scaffold0479 (736-777)||(9208-9250)
[»] scaffold0315 (1 HSPs)
scaffold0315 (736-777)||(7911-7953)
[»] scaffold0026 (1 HSPs)
scaffold0026 (735-768)||(7131-7164)


Alignment Details
Target: scaffold0004 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 277 - 662
Target Start/End: Original strand, 376559 - 376943
Alignment:
Q  277 tttgaaaattactccgagcttgttgcatgaacatatcaaataagaaatgaagcaaggctcgttatctttgtagaaggttctaaaacagcttgcaattttc 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||     
T  376559 tttgaaaattactccgagcttgttgcatgaacatatcaaataagaaatgaagcaatgctcgttatctttgtagaaggttctaaaacagcttgcaattttg 376658  T
Q  377 tttctacttttcaagtatgtttatgaactcgagtctattgtaccgattcttttatgta-ttttcgctttggcttgagtatttgtttaccggtgtttttgg 475  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||    
T  376659 tttctacttttcaagtatgtttatgaactcgagtctattgtaccgattcttttaggtattttttgctttggcttgagtatttgtttaccggtgtttttgg 376758  T
Q  476 caaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggttttgatnnnnnnnnnncggtttgaaaaa 575  Q
    ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||          ||||||||||||    
T  376759 caaactatgggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggtttcgat--aaaaaaaacggtttgaaaaa 376856  T
Q  576 cgccacgaaatgcacctaggttacttagagagcaggacggattttagagtaaaaaagggcactgtctctcgacaggtttgagattgc 662  Q
     ||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||| |||||||||||||||||||||||    
T  376857 ggccacgaaatgcacctaggttacttagagagaaggacgagttttagagtaaaaaagggcactatctctcgacaggtttgagattgc 376943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 175; E-Value: 9e-94
Query Start/End: Original strand, 8 - 198
Target Start/End: Original strand, 376367 - 376557
Alignment:
Q  8 tcatgcatctctgatggactagtttgagcagcataacttgtccttttgctcctcattctctgagtttggatttttcatccaacaatgatgttagaatatg 107  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  376367 tcatgcatctctgttggactagtttgaggagcataacttgtccttttgctcctcattctctgagtttggatttttcatccaacaatgatgttagaatatg 376466  T
Q  108 attggtcagcaaccttgttaattttgtcagaaattgaaaaacactgctaacttgctaattactttgttgttgtggttaacctaggcaatta 198  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  376467 attggtcagcaaccttgttaattttgtcagaaattgaacaacactactaacttgctaattactttgttgttgtggttaacctaggcaatta 376557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 484 - 550
Target Start/End: Complemental strand, 370167 - 370102
Alignment:
Q  484 gggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggtttt 550  Q
    ||||||||||||||| |||||||||||| |||||||||||||||| |  ||||||||||||||||||    
T  370167 gggctagttctgattattacaagcgagatcgaactagaaatctca-agaatgttgtgcaaaggtttt 370102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 111; Significance: 1e-55; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 457 - 662
Target Start/End: Complemental strand, 11889843 - 11889642
Alignment:
Q  457 tgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggttttgatnnn 556  Q
    |||||| ||||||||| |||||||| |||| ||||||||||| |||||||  ||||||||||||||||||||| |||||||||| ||||||||||||       
T  11889843 tgtttatcggtgttttcggcaaactacgggttagttctgattattacaagtaagaccgaactagaaatctcaggacatgttgtgtaaaggttttgatcga 11889744  T
Q  557 nnnnnnncggtttgaaaaacgccacgaaatgcacctaggttacttagagagcaggacggattttagagtaaaaaagggcactgtctctcgacaggtttga 656  Q
           |||||||||||| ||||||||||||||  ||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||    
T  11889743 aaa----cggtttgaaaaaggccacgaaatgcactcaggttacttagagagcagggcggatttcagagtaaaaaaaggcactgtctctcgacaggtttga 11889648  T
Q  657 gattgc 662  Q
    ||||||    
T  11889647 gattgc 11889642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 454 - 662
Target Start/End: Complemental strand, 14633110 - 14632907
Alignment:
Q  454 atttgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggttttgat 553  Q
    |||||||||  |||||||| || ||||| |||||||||||||||| |||||||||||||| ||||||||||||||  |||||||||||||||||||||||    
T  14633110 atttgtttaaaggtgttttcggaaaactacgggctagttctgattattacaagcgagaccaaactagaaatctcatgacatgttgtgcaaaggttttgat 14633011  T
Q  554 nnnnnnnnnncggtttgaaaaacgccacgaaatgcacctaggttacttagagagcaggacggattttagagtaaaaaagggcactgtctctcgacaggtt 653  Q
              |||||||||||| ||||| | ||| ||  ||||||||||||||||| ||||| ||||||| | |||||||||||||||||||||||||||    
T  14633010 ----cgaaaacggtttgaaaaaggccacaagatgtactcaggttacttagagagcaagacgggttttagaat-aaaaagggcactgtctctcgacaggtt 14632916  T
Q  654 tgagattgc 662  Q
    |||||||||    
T  14632915 tgagattgc 14632907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 454 - 662
Target Start/End: Complemental strand, 12810344 - 12810140
Alignment:
Q  454 atttgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggttttgat 553  Q
    ||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||| |||| |||| |||||||||||||||||||||||    
T  12810344 atttgtttaccggtgttttcggcaaactacgggctagttctgattattacaagcgagaccgaactaaaaatatcaggacatgttgtgcaaaggttttgat 12810245  T
Q  554 nnnnnnnnnncggtttgaaaaa-cgccacgaaatgcacctaggttacttagagagcaggacggattttagagtaaaaaagggcactgtctctcgacaggt 652  Q
              ||||||||||||  || |||| ||||||  ||||||||||||||||||||| | |||| ||   | ||||||||||||||||||||||||    
T  12810244 ----aaaaaacggtttgaaaaagggcaacgagatgcactcaggttacttagagagcaggacaggtttt-gaaatagaaagggcactgtctctcgacaggt 12810150  T
Q  653 ttgagattgc 662  Q
    ||||||||||    
T  12810149 ttgagattgc 12810140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 457 - 553
Target Start/End: Original strand, 10070337 - 10070433
Alignment:
Q  457 tgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggttttgat 553  Q
    |||||| ||||||||| |||||||  || ||||||| ||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  10070337 tgtttatcggtgttttcggcaaacaacgagctagttatgattattacaagcgagaccgaactagaaatcttaggacatgttgtgcaaaggttttgat 10070433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 566 - 662
Target Start/End: Complemental strand, 18558661 - 18558566
Alignment:
Q  566 gtttgaaaaacgccacgaaatgcacctaggttacttagagagcaggacggattttagagtaaaaaagggcactgtctctcgacaggtttgagattgc 662  Q
    |||||||||| ||||||||||||||  |||||||||||||||||||||  |||||||||||||||| ||||||||||||||| |||||||| |||||    
T  18558661 gtttgaaaaatgccacgaaatgcactcaggttacttagagagcaggacaaattttagagtaaaaaa-ggcactgtctctcgataggtttgatattgc 18558566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 736 - 810
Target Start/End: Complemental strand, 29120648 - 29120571
Alignment:
Q  736 tgcttctgatcaatgttttcagcttaggag-aaacgaaga-aaagccaac-caactcaaccccctcttcttgggtttt 810  Q
    |||||||||||| ||||||||||||||||| ||| ||||| ||||||||| ||| ||||||||| ||||||| |||||    
T  29120648 tgcttctgatcagtgttttcagcttaggagaaaaagaagagaaagccaacacaattcaacccccccttcttgtgtttt 29120571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 736 - 768
Target Start/End: Original strand, 14905154 - 14905186
Alignment:
Q  736 tgcttctgatcaatgttttcagcttaggagaaa 768  Q
    |||||||||||||||||||||||||||||||||    
T  14905154 tgcttctgatcaatgttttcagcttaggagaaa 14905186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 735 - 777
Target Start/End: Complemental strand, 12600036 - 12599993
Alignment:
Q  735 ttgcttctgatcaatgttttcagcttaggag-aaacgaagaaaa 777  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||    
T  12600036 ttgcttctgatcagtgttttcagcttaggagaaaacgaagaaaa 12599993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 735 - 810
Target Start/End: Complemental strand, 16631720 - 16631642
Alignment:
Q  735 ttgcttctgatcaatgttttcagcttaggag-aaacgaag-aaaagccaac-caactcaaccccctcttcttgggtttt 810  Q
    |||||| |||||| ||||||||||||||||| ||| |||| |||| ||||| ||| ||||||||||||||||| |||||    
T  16631720 ttgcttttgatcagtgttttcagcttaggagaaaaggaagaaaaaaccaacacaattcaaccccctcttcttgtgtttt 16631642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 736 - 777
Target Start/End: Original strand, 24628726 - 24628768
Alignment:
Q  736 tgcttctgatcaatgttttcagcttaggag-aaacgaagaaaa 777  Q
    |||||||||||| ||||||||||||||||| ||||||||||||    
T  24628726 tgcttctgatcagtgttttcagcttaggagaaaacgaagaaaa 24628768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 5e-49; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 457 - 654
Target Start/End: Original strand, 22010842 - 22011036
Alignment:
Q  457 tgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggttttgatnnn 556  Q
    |||||| ||||||||| || ||||| |||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||       
T  22010842 tgtttatcggtgttttcgggaaactacgggctagttttgattattacaagcgagaccgaactagaaatctcaggacatgttgtgcaaaggttttgat--- 22010938  T
Q  557 nnnnnnncggtttgaaaaacgccacgaaatgcacctaggttacttagagagcaggac-ggattttagagtaaaaaagggcactgtctctcgacaggttt 654  Q
           |||||||||||| ||||| ||||||||  ||||||||||||| ||||||| || |||||||||||||||||||||| |||||||||||||||    
T  22010939 -caaaaacggtttgaaaaaggccacaaaatgcactcaggttacttagagggcaggacgggtttttagagtaaaaaagggcactatctctcgacaggttt 22011036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 460 - 656
Target Start/End: Original strand, 25769499 - 25769692
Alignment:
Q  460 ttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggttttgatnnnnnn 559  Q
    ||||||||||||| | |||||| |||||||||||||||| ||||||| | |||||||||||||||| ||| ||||||||| ||||||||||||           
T  25769499 ttaccggtgttttcgacaaactacgggctagttctgattattacaagagggaccgaactagaaatcccaggacatgttgtccaaaggttttga----gaa 25769594  T
Q  560 nnnncggtttgaaaaacgccacgaaatgcacctaggttacttagagagcaggacggattttagag-taaaaaagggcactgtctctcgacaggtttga 656  Q
        | |||||||||| ||||||||||||||  ||||||||||||||||| ||||| |||||||| | |||||||||| |||||||||||||||||||    
T  25769595 aaaacagtttgaaaaaggccacgaaatgcacgcaggttacttagagagcaagacgggttttagagtttaaaaagggcattgtctctcgacaggtttga 25769692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 457 - 662
Target Start/End: Complemental strand, 22969807 - 22969609
Alignment:
Q  457 tgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggttttgatnnn 556  Q
    |||| |||||||||||||||||| | |||||||||||||| | |||||||||||||||||||||| ||||||  |||   |||||||||||||||||       
T  22969807 tgttaaccggtgtttttggcaaattacgggctagttctgactattacaagcgagaccgaactagatatctcacgaca---tgtgcaaaggttttgat--- 22969714  T
Q  557 nnnnnnncggtttgaaaaacgccacgaaatgcacctaggttacttagagagcagga-cggattttagagtaaaaaagggcactgtctctcgacaggtttg 655  Q
           |||||||||||| |||||||| |||||  ||||||| ||||||||| ||  || ||||||||||||||| ||||||||||||||||| |||||    
T  22969713 -cgaaaacggtttgaaaaaggccacgaagtgcactcaggttacctagagagcatgataggtttttagagtaaaaaa-ggcactgtctctcgacatgtttg 22969616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 456 - 656
Target Start/End: Complemental strand, 36197029 - 36196831
Alignment:
Q  456 ttgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggttttgatnn 555  Q
    ||||||| ||||||||| |||| ||| |||||||||||||||| ||||||||| |||||||||||||||| ||| ||||||||||||||||||||||       
T  36197029 ttgtttatcggtgttttcggcatactacgggctagttctgattattacaagcgggaccgaactagaaatcacaggacatgttgtgcaaaggttttga--- 36196933  T
Q  556 nnnnnnnncggtttgaaaaacgccacgaaatgcacctaggttacttagagagcaggacggattttagag---taaaaaagggcactgtctctcgacaggt 652  Q
            |   |||||||| ||||||||||||||  |||||||||| |||||| ||||  ||||||||   |||||||||| ||||||||||||| |||    
T  36196932 --ggaaaacaacttgaaaaaggccacgaaatgcactcaggttacttaaagagcaagacgagttttagagttttaaaaaagggtactgtctctcgacgggt 36196835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 454 - 553
Target Start/End: Complemental strand, 24924392 - 24924292
Alignment:
Q  454 atttgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctca-gaacatgttgtgcaaaggttttga 552  Q
    |||||||| ||  |||||| |||||||| |||| ||||||||||| |||||||||| ||||||||||| |||||| || ||||||||||||| |||||||    
T  24924392 atttgtttgcctatgttttcggcaaactacgggttagttctgattattacaagcgaaaccgaactagagatctcaggagcatgttgtgcaaaagttttga 24924293  T
Q  553 t 553  Q
    |    
T  24924292 t 24924292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 453 - 553
Target Start/End: Complemental strand, 16470454 - 16470356
Alignment:
Q  453 tatttgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctcagaa-catgttgtgcaaaggttttg 551  Q
    ||||||||| || |||||||||||||||   |  |||||||| ||| |||||||||||||||||||||| ||||||||| ||||||||| ||||||||||    
T  16470454 tatttgtttgcctgtgtttttggcaaac---gaactagttcttattattacaagcgagaccgaactagagatctcagaatcatgttgtgtaaaggttttg 16470358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 566 - 662
Target Start/End: Original strand, 25369030 - 25369124
Alignment:
Q  566 gtttgaaaaacg-ccacgaaatgcacctaggttacttagagagcaggacggattttagagtaaaaaagggcactgtctctcgacaggtttgagattgc 662  Q
    |||||||||||| ||||||||||||| |||||| ||||||||||||||||| ||| | |||||||   |||||| ||||||| || |||| |||||||    
T  25369030 gtttgaaaaacggccacgaaatgcacttaggttgcttagagagcaggacgggtttgatagtaaaa---ggcactatctctcggcaagttttagattgc 25369124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 457 - 550
Target Start/End: Original strand, 16075308 - 16075399
Alignment:
Q  457 tgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggtttt 550  Q
    ||||| || ||| ||||||||||| | ||||||||||||||| |||||||||| ||| ||||||||||||||  ||  ||||||||||||||||    
T  16075308 tgtttgcctgtggttttggcaaacgg-gggctagttctgattattacaagcgaaaccaaactagaaatctcaagac-cgttgtgcaaaggtttt 16075399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 457 - 525
Target Start/End: Complemental strand, 17811062 - 17810994
Alignment:
Q  457 tgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatc 525  Q
    |||||||| |||||||||  ||||| |||||||  ||||||| |||||||||||| |||||||||||||    
T  17811062 tgtttaccagtgtttttgataaactacgggctaactctgattattacaagcgagatcgaactagaaatc 17810994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 484 - 550
Target Start/End: Original strand, 17987249 - 17987314
Alignment:
Q  484 gggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggtttt 550  Q
    ||||||| ||||||| ||| |||||||| |||||||||||||||| |||  ||||||||||||||||    
T  17987249 gggctagctctgattattataagcgagatcgaactagaaatctcaaaac-cgttgtgcaaaggtttt 17987314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 735 - 810
Target Start/End: Original strand, 22000881 - 22000958
Alignment:
Q  735 ttgcttctgatcaatgttttcagcttaggag-aaacgaag-aaaagccaac-caactcaaccccctcttcttgggtttt 810  Q
    ||||||||||||| ||||||||||||||||| |||||||| |||||| ||| ||||||||||||| ||||||| |||||    
T  22000881 ttgcttctgatcagtgttttcagcttaggagaaaacgaagaaaaagctaacacaactcaaccccc-cttcttgtgtttt 22000958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 454 - 524
Target Start/End: Complemental strand, 23779480 - 23779411
Alignment:
Q  454 atttgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaat 524  Q
    |||||||| || ||| ||||||||||| | || |||||||||||| |||||||||||| ||||||||||||    
T  23779480 atttgtttgcctgtgattttggcaaacagagg-ctagttctgattattacaagcgagatcgaactagaaat 23779411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 454 - 524
Target Start/End: Complemental strand, 23866433 - 23866364
Alignment:
Q  454 atttgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaat 524  Q
    |||||||| || ||| ||||||||||| | || |||||||||||| |||||||||||| ||||||||||||    
T  23866433 atttgtttgcctgtgattttggcaaacagagg-ctagttctgattattacaagcgagatcgaactagaaat 23866364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 735 - 777
Target Start/End: Complemental strand, 31487491 - 31487448
Alignment:
Q  735 ttgcttctgatcaatgttttcagcttaggag-aaacgaagaaaa 777  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||    
T  31487491 ttgcttctgatcagtgttttcagcttaggagaaaacgaagaaaa 31487448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 736 - 777
Target Start/End: Original strand, 7746551 - 7746593
Alignment:
Q  736 tgcttctgatcaatgttttcagcttaggag-aaacgaagaaaa 777  Q
    |||||||||||| ||||||||||||||||| ||||||||||||    
T  7746551 tgcttctgatcagtgttttcagcttaggagaaaacgaagaaaa 7746593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 735 - 768
Target Start/End: Complemental strand, 42242890 - 42242857
Alignment:
Q  735 ttgcttctgatcaatgttttcagcttaggagaaa 768  Q
    ||||||||||||| ||||||||||||||||||||    
T  42242890 ttgcttctgatcagtgttttcagcttaggagaaa 42242857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 5e-49; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 456 - 662
Target Start/End: Original strand, 25576435 - 25576636
Alignment:
Q  456 ttgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggttttgatnn 555  Q
    |||||||||||||||||  ||||||| ||||||| |||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||      
T  25576435 ttgtttaccggtgttttctgcaaactacgggctaattctgattattacaagcgagaccgaactagaaatctcaggacatgctgtgcaaaggttttgat-- 25576532  T
Q  556 nnnnnnnncggtttgaaaaacgccacgaaatgcacctaggttacttagagagcaggacggattttagagtaaaaaagggcactgtctctcgacaggtttg 655  Q
            |||||||||||| ||||||| ||||||  ||||||||||||||||||||||| |||| ||   |||||||||||||||| ||||||||||||    
T  25576533 --cgaaaacggtttgaaaaaggccacgagatgcactcaggttacttagagagcaggacgggtttt-gaaataaaaagggcactgtctttcgacaggtttg 25576629  T
Q  656 agattgc 662  Q
    |||||||    
T  25576630 agattgc 25576636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 454 - 662
Target Start/End: Original strand, 23780416 - 23780616
Alignment:
Q  454 atttgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggttttgat 553  Q
    ||||| |||||| |||||| |||||||| |||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  23780416 atttgcttaccgctgttttcggcaaactacgggctagttctgattattacaagcgagaccgaactggaaatctcaggacatgttgtgcaaaggttttgat 23780515  T
Q  554 nnnnnnnnnncggtttgaaaaacgccacgaaatgcacctaggttacttagagagcaggacggattttagagtaaaaaagggcactgtctctcgacaggtt 653  Q
              |||||||||||| ||||| ||||||||  || |||||||||||| ||||||  ||||||||||||    |||| || |||||||||||||    
T  23780516 ----cgaaaacggtttgaaaaaggccacaaaatgcactcagattacttagagagtaggacgagttttagagtaaa----ggcattgcctctcgacaggtt 23780607  T
Q  654 tgagattgc 662  Q
    || ||||||    
T  23780608 tgcgattgc 23780616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 454 - 656
Target Start/End: Complemental strand, 27861359 - 27861162
Alignment:
Q  454 atttgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggttttgat 553  Q
    ||||||||| | ||||||| |||||||| | |||||||||||||| || |||||| |||||||||||||||| ||| ||||||||||||||||||||||     
T  27861359 atttgtttaactgtgttttcggcaaactacaggctagttctgattattccaagcgggaccgaactagaaatcccaggacatgttgtgcaaaggttttga- 27861261  T
Q  554 nnnnnnnnnncggttt-gaaaaacgccacgaaatgcacctaggttacttagagagcaggacggattttagagtaaaaaagggcactgtctctcgacaggt 652  Q
              | ||||  ||||| ||||||||||||||  ||||||||||||||||| ||| | ||||||||| ||||||||||||||||||||||||||    
T  27861260 ----ggaaaacagtttaaaaaaaggccacgaaatgcactcaggttacttagagagcaagacaggttttagagt-aaaaagggcactgtctctcgacaggt 27861166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 454 - 660
Target Start/End: Original strand, 22801344 - 22801544
Alignment:
Q  454 atttgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggttttgat 553  Q
    ||||||||||| ||||||| |||||||| |||||||||||||||| ||||||| ||||||||| ||||||||| || |||| |||||||||||||||||     
T  22801344 atttgtttacctgtgttttcggcaaactacgggctagttctgattattacaagtgagaccgaattagaaatcttaggacatattgtgcaaaggttttga- 22801442  T
Q  554 nnnnnnnnnncggtttgaaaaacgccacgaaatgcacctaggttacttagagagcaggacggattttagagtaaaaaagggcactgtctctcgacaggtt 653  Q
              |||||||||||| ||||| | ||||||  ||||||| ||||||||||||||||||||  | ||||||  |||| |||||||| | |||||    
T  22801443 ---ccgaaaacggtttgaaaaatgccacaagatgcactcaggttacatagagagcaggacggattttgaaataaaaa--ggcattgtctctctataggtt 22801537  T
Q  654 tgagatt 660  Q
    |||||||    
T  22801538 tgagatt 22801544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 465 - 656
Target Start/End: Complemental strand, 28141642 - 28141454
Alignment:
Q  465 ggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggttttgatnnnnnnnnnnc 564  Q
    |||||||| |||||||| || | ||||||||||| ||||||| | || ||||| | |||| |||| ||||||||||||||||||||||           |    
T  28141642 ggtgttttcggcaaactacgagttagttctgattattacaagtgggatcgaaccaaaaatttcaggacatgttgtgcaaaggttttga-----cgaaaac 28141548  T
Q  565 ggtttgaaaaacgccacgaaatgcacctaggttacttagagagcaggacggattttagag--taaaaaagggcactgtctctcgacaggtttga 656  Q
     |||||||||| ||||| ||||||||  ||||||||||||||||| ||||| ||||||||  |||||||||||||| |||||||||||||||||    
T  28141547 agtttgaaaaaggccacaaaatgcactcaggttacttagagagcaagacgggttttagagtttaaaaaagggcactatctctcgacaggtttga 28141454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 454 - 553
Target Start/End: Complemental strand, 27598138 - 27598038
Alignment:
Q  454 atttgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctca-gaacatgttgtgcaaaggttttga 552  Q
    |||||||| || |||||||||||||||| | |||||||||||||| ||||||| |||||||||||||| |||||| || |||||||||||||||||||||    
T  27598138 atttgtttgcctgtgtttttggcaaactacaggctagttctgattattacaagtgagaccgaactagagatctcaggagcatgttgtgcaaaggttttga 27598039  T
Q  553 t 553  Q
    |    
T  27598038 t 27598038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 461 - 645
Target Start/End: Original strand, 28144236 - 28144417
Alignment:
Q  461 taccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggttttgatnnnnnnn 560  Q
    |||||||||||| |||||||| || | ||||||||||| |||||||||||||||||| | |||  |||  ||||||||||||||||||||||            
T  28144236 taccggtgttttcggcaaactacgagttagttctgattattacaagcgagaccgaaccaaaaaattcaagacatgttgtgcaaaggttttga-----cga 28144330  T
Q  561 nnncggtttgaaaaacgccacgaaatgcacctaggttacttagagagcaggacggattttagag--taaaaaagggcactgtctctc 645  Q
       |  ||||||||| ||||||||||||||  ||||||||||||||||| ||| | ||||||||  |||||||||||||| ||||||    
T  28144331 aaacaatttgaaaaaggccacgaaatgcactcaggttacttagagagcaagacaggttttagagtttaaaaaagggcactatctctc 28144417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 467 - 553
Target Start/End: Original strand, 13821702 - 13821790
Alignment:
Q  467 tgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctca-gaacatgttgtgc-aaaggttttgat 553  Q
    |||||| || ||||| |||||||||||||||| |||||||||||||||||||||| |||||| || |||||||||| ||||||||||||    
T  13821702 tgttttcggaaaactacgggctagttctgattattacaagcgagaccgaactagagatctcaggagcatgttgtgcaaaaggttttgat 13821790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 457 - 662
Target Start/End: Complemental strand, 27190402 - 27190200
Alignment:
Q  457 tgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggttttgatnnn 556  Q
    ||||||| |||||||| ||||||||  |||||||||| |||| | ||  |||||| |||||||||||||| || | |||||||||||| ||||||||       
T  27190402 tgtttactggtgttttcggcaaactatgggctagttcagattataacgtgcgagatcgaactagaaatcttaggatatgttgtgcaaatgttttgataaa 27190303  T
Q  557 nnnnnnncggtttgaaaaa--cgccacgaaatgcacctaggttacttagagagcaggacggattttagagtaaaaaagggcactgtctctcgacaggttt 654  Q
            ||||| |||||   ||||||| ||||||  ||||||| ||||||||||||| || ||| ||   |||||||||||||||||||||||| |||    
T  27190302 aaat----ggtttaaaaaaagggccacgagatgcactcaggttacatagagagcaggac-gagttttgaaataaaaagggcactgtctctcgacagattt 27190208  T
Q  655 gagattgc 662  Q
    ||||||||    
T  27190207 gagattgc 27190200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 457 - 662
Target Start/End: Complemental strand, 27840216 - 27840014
Alignment:
Q  457 tgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggttttgatnnn 556  Q
    ||||||| |||||||| ||||||||  |||||||||| |||| | ||  |||||| |||||||||||||| || | |||||||||||| ||||||||       
T  27840216 tgtttactggtgttttcggcaaactatgggctagttcagattataacgtgcgagatcgaactagaaatcttaggatatgttgtgcaaatgttttgataaa 27840117  T
Q  557 nnnnnnncggtttgaaaaa--cgccacgaaatgcacctaggttacttagagagcaggacggattttagagtaaaaaagggcactgtctctcgacaggttt 654  Q
            ||||| |||||   ||||||| ||||||  ||||||| ||||||||||||| || ||| ||   |||||||||||||||||||||||| |||    
T  27840116 aaat----ggtttaaaaaaagggccacgagatgcactcaggttacatagagagcaggac-gagttttgaaataaaaagggcactgtctctcgacagattt 27840022  T
Q  655 gagattgc 662  Q
    ||||||||    
T  27840021 gagattgc 27840014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 735 - 810
Target Start/End: Complemental strand, 24778614 - 24778536
Alignment:
Q  735 ttgcttctgatcaatgttttcagcttaggag-aaacgaag-aaaagccaac-caactcaaccccctcttcttgggtttt 810  Q
    ||||||||||||| ||||||||||||||||| |||||||| |||||||||| ||| ||||||||| ||||||| |||||    
T  24778614 ttgcttctgatcagtgttttcagcttaggagtaaacgaagaaaaagccaacacaattcaacccccccttcttgtgtttt 24778536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 457 - 553
Target Start/End: Complemental strand, 20478652 - 20478555
Alignment:
Q  457 tgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctca-gaacatgttgtgcaaaggttttgat 553  Q
    ||||| || ||||||| |||||||| | || ||||||||||| ||||||   ||||||||||||| |||| | || ||||||||||||||||||||||    
T  20478652 tgtttgccagtgttttaggcaaactacaggttagttctgattattacaattcagaccgaactagagatcttaggagcatgttgtgcaaaggttttgat 20478555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 457 - 550
Target Start/End: Complemental strand, 25568847 - 25568756
Alignment:
Q  457 tgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggtttt 550  Q
    ||||| || ||| ||||||||||| | ||||||||||||||| |||||| ||||| ||||||||||||||||  ||  ||||||||||||||||    
T  25568847 tgtttgcctgtgattttggcaaacgg-gggctagttctgattattacaatcgagatcgaactagaaatctcaagac-cgttgtgcaaaggtttt 25568756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 736 - 768
Target Start/End: Original strand, 28712524 - 28712556
Alignment:
Q  736 tgcttctgatcaatgttttcagcttaggagaaa 768  Q
    |||||||||||||||||||||||||||||||||    
T  28712524 tgcttctgatcaatgttttcagcttaggagaaa 28712556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 735 - 777
Target Start/End: Original strand, 20569566 - 20569609
Alignment:
Q  735 ttgcttctgatcaatgttttcagcttaggag-aaacgaagaaaa 777  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||    
T  20569566 ttgcttctgatcagtgttttcagcttaggagaaaacgaagaaaa 20569609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 735 - 777
Target Start/End: Complemental strand, 40780592 - 40780549
Alignment:
Q  735 ttgcttctgatcaatgttttcagcttaggag-aaacgaagaaaa 777  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||    
T  40780592 ttgcttctgatcagtgttttcagcttaggagaaaacgaagaaaa 40780549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 736 - 777
Target Start/End: Original strand, 24851490 - 24851532
Alignment:
Q  736 tgcttctgatcaatgttttcagcttaggag-aaacgaagaaaa 777  Q
    |||||||||||| ||||||||||||||||| ||||||||||||    
T  24851490 tgcttctgatcagtgttttcagcttaggagaaaacgaagaaaa 24851532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 736 - 777
Target Start/End: Complemental strand, 25188684 - 25188642
Alignment:
Q  736 tgcttctgatcaatgttttcagcttaggag-aaacgaagaaaa 777  Q
    |||||||||||| ||||||||||||||||| ||||||||||||    
T  25188684 tgcttctgatcagtgttttcagcttaggagaaaacgaagaaaa 25188642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 736 - 777
Target Start/End: Original strand, 39038458 - 39038500
Alignment:
Q  736 tgcttctgatcaatgttttcagcttaggag-aaacgaagaaaa 777  Q
    |||||||||||| ||||||||||||||||| ||||||||||||    
T  39038458 tgcttctgatcagtgttttcagcttaggagaaaacgaagaaaa 39038500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 735 - 768
Target Start/End: Original strand, 10010567 - 10010600
Alignment:
Q  735 ttgcttctgatcaatgttttcagcttaggagaaa 768  Q
    ||||||||||||| ||||||||||||||||||||    
T  10010567 ttgcttctgatcagtgttttcagcttaggagaaa 10010600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 457 - 550
Target Start/End: Original strand, 11323467 - 11323558
Alignment:
Q  457 tgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggtttt 550  Q
    ||||| || ||| ||||||||||| | ||||||| ||||||| |||||||  ||| |||||||||||||||| |  ||| ||||||||||||||    
T  11323467 tgtttgcctgtgattttggcaaac-gagggctagctctgattattacaagttagatcgaactagaaatctca-agaatgctgtgcaaaggtttt 11323558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 736 - 810
Target Start/End: Original strand, 22455777 - 22455854
Alignment:
Q  736 tgcttctgatcaatgttttcagcttaggag-aaacgaag-aaaagccaac-caactcaaccccctcttcttgggtttt 810  Q
    |||||||||||| |||||| |||||||||| |||||||| |||||| ||| ||| ||||||||| ||||||| |||||    
T  22455777 tgcttctgatcagtgttttgagcttaggagaaaacgaagaaaaagctaacacaattcaacccccccttcttgtgtttt 22455854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 735 - 768
Target Start/End: Complemental strand, 24575315 - 24575282
Alignment:
Q  735 ttgcttctgatcaatgttttcagcttaggagaaa 768  Q
    ||||||||||||| ||||||||||||||||||||    
T  24575315 ttgcttctgatcagtgttttcagcttaggagaaa 24575282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 633 - 662
Target Start/End: Complemental strand, 25568682 - 25568653
Alignment:
Q  633 ggcactgtctctcgacaggtttgagattgc 662  Q
    ||||||||||||||||||||||||||||||    
T  25568682 ggcactgtctctcgacaggtttgagattgc 25568653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 735 - 768
Target Start/End: Original strand, 28702041 - 28702074
Alignment:
Q  735 ttgcttctgatcaatgttttcagcttaggagaaa 768  Q
    ||||||||||||| ||||||||||||||||||||    
T  28702041 ttgcttctgatcagtgttttcagcttaggagaaa 28702074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 735 - 768
Target Start/End: Complemental strand, 38631032 - 38630999
Alignment:
Q  735 ttgcttctgatcaatgttttcagcttaggagaaa 768  Q
    ||||||||||||| ||||||||||||||||||||    
T  38631032 ttgcttctgatcagtgttttcagcttaggagaaa 38630999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 8e-48; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 459 - 662
Target Start/End: Complemental strand, 17863618 - 17863419
Alignment:
Q  459 tttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggttttgatnnnnn 558  Q
    |||||| |||||||||||||| | |||||||||||||||| |||||||||| ||||||||||||||||||| ||||||| |||||||||||||||         
T  17863618 tttacctgtgtttttggcaaattacgggctagttctgattattacaagcgataccgaactagaaatctcaggacatgttttgcaaaggttttgatcgaaa 17863519  T
Q  559 nnnnncggtttgaaaaacgccacgaaatgcacctaggttacttagagagcaggacggattttagagtaaaaaagggcactgtctctcgacaggtttgaga 658  Q
          ||||||||||| |||| |||||||||  |||||||||||||||||||||   ||||||||| ||||||||| |||||||||||||| |||||||    
T  17863518 at----ggtttgaaaaaggccatgaaatgcactcaggttacttagagagcaggacatgttttagagtcaaaaagggcgctgtctctcgacagatttgaga 17863423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 457 - 662
Target Start/End: Original strand, 12410300 - 12410501
Alignment:
Q  457 tgtttaccggtgtttttggcaaactgcg-ggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggttttgatnn 555  Q
    ||||||||||||||||  ||||||| |  |||||||||| ||| |||||||| |||||||| || ||||||||  |||||||||||||||||||||||      
T  12410300 tgtttaccggtgttttcagcaaactacctggctagttctaattattacaagcaagaccgaattaaaaatctcacgacatgttgtgcaaaggttttgatcg 12410399  T
Q  556 nnnnnnnncggtttgaaaaacgccacgaaatgcacctaggttacttagagagcaggacggattttagagtaaaaaagggcactgtctctcgacaggtttg 655  Q
            | |||||||||| | ||||||||||||  ||||||||||||||||||||||  ||||| |||  ||||||||| ||||||||||||||||||    
T  12410400 aaaa----cagtttgaaaaaggtcacgaaatgcactgaggttacttagagagcaggacgagttttaaagt-gaaaagggcattgtctctcgacaggtttg 12410494  T
Q  656 agattgc 662  Q
    |||||||    
T  12410495 agattgc 12410501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 456 - 662
Target Start/End: Original strand, 20194547 - 20194748
Alignment:
Q  456 ttgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggttttgatnn 555  Q
    ||||||||  ||||||| || ||||| | |||||||||| || || |||||||||||||||||| ||||||||| |||||||||||||||||||||||      
T  20194547 ttgtttactagtgttttcggaaaactacaggctagttctaatatt-acaagcgagaccgaactaaaaatctcaggacatgttgtgcaaaggttttgatcg 20194645  T
Q  556 nnnnnnnncggtttgaaaaacg--ccacgaaatgcacctaggttacttagagagcaggacggattttagagtaaaaaagggcactgtctctcgacaggtt 653  Q
            | |||||||||| |  ||||||||||||| |||||||||||||||||| || |  ||||||||||||||  ||||||||||||||||| |||    
T  20194646 aaaa----cagtttgaaaaaagggccacgaaatgcacttaggttacttagagagcaagatgagttttagagtaaaaa--ggcactgtctctcgacaagtt 20194739  T
Q  654 tgagattgc 662  Q
    |||||||||    
T  20194740 tgagattgc 20194748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 456 - 662
Target Start/End: Original strand, 22088570 - 22088771
Alignment:
Q  456 ttgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggttttgatnn 555  Q
    ||||||||  ||||||| || ||||| | |||||||||| || || |||||||||||||||||| ||||||||| |||||||||||||||||||||||      
T  22088570 ttgtttactagtgttttcggaaaactacaggctagttctaatatt-acaagcgagaccgaactaaaaatctcaggacatgttgtgcaaaggttttgatcg 22088668  T
Q  556 nnnnnnnncggtttgaaaaacg--ccacgaaatgcacctaggttacttagagagcaggacggattttagagtaaaaaagggcactgtctctcgacaggtt 653  Q
            | |||||||||| |  ||||||||||||| |||||||||||||||||| || |  ||||||||||||||  ||||||||||||||||| |||    
T  22088669 aaaa----cagtttgaaaaaagggccacgaaatgcacttaggttacttagagagcaagatgagttttagagtaaaaa--ggcactgtctctcgacaagtt 22088762  T
Q  654 tgagattgc 662  Q
    |||||||||    
T  22088763 tgagattgc 22088771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 453 - 660
Target Start/End: Original strand, 21375824 - 21376027
Alignment:
Q  453 tatttgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggttttga 552  Q
    |||||||||||| ||||||| |||||||| ||||| |||||||||| ||  ||| |||||||||||||||||||||  ||||||||||||||||||||||    
T  21375824 tatttgtttacctgtgttttcggcaaactacgggccagttctgattgttgaaagtgagaccgaactagaaatctcaagacatgttgtgcaaaggttttga 21375923  T
Q  553 tnnnnnnnnnncggtttgaaaaa--cgccacgaaatgcacctaggttacttagagagcaggacggattttagagtaaaaaagggcactgtctctcgacag 650  Q
    |            ||||||||||   |||| || ||||||  |||||||||||||||||||| || ||||  |  | |||||||||||||||||||||||    
T  21375924 tagaaaaat----gtttgaaaaaagggccatgagatgcactcaggttacttagagagcaggatgggttttgaa--ataaaagggcactgtctctcgacag 21376017  T
Q  651 gtttgagatt 660  Q
    ||||||||||    
T  21376018 gtttgagatt 21376027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 513 - 662
Target Start/End: Complemental strand, 7391420 - 7391275
Alignment:
Q  513 cgaactagaaatctcagaacatgttgtgcaaaggttttgatnnnnnnnnnncggtttgaaaaacg-ccacgaaatgcacctaggttacttagagagcagg 611  Q
    ||||| ||||||||||| |||||||| ||||||||||||||          |||||||||||| | |||||  |||||| ||||||||||||||||||||    
T  7391420 cgaacaagaaatctcaggacatgttgcgcaaaggttttgatcgaaaa----cggtttgaaaaagggccacgggatgcacttaggttacttagagagcagg 7391325  T
Q  612 acggattttagagtaaaaaagggcactgtctctcgacaggtttgagattgc 662  Q
    |||  ||||  | | |||||||||| |||||||||||||||||||||||||    
T  7391324 acgagttttcaaat-aaaaagggcattgtctctcgacaggtttgagattgc 7391275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 457 - 662
Target Start/End: Original strand, 34500977 - 34501174
Alignment:
Q  457 tgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggttttgatnnn 556  Q
    ||||| || ||| ||||||||||| | ||||||||||||||| |||||||||||| ||| ||||||||||||  || ||||||||||||||||| ||       
T  34500977 tgtttgcctgtgattttggcaaacgg-gggctagttctgattattacaagcgagatcgatctagaaatctcaagac-tgttgtgcaaaggtttttatctg 34501074  T
Q  557 nnnnnnncggtttgaaaaacgccacgaaatgcacctaggttacttagagagcaggacggattttagagtaaaaaagggcactgtctctcgacaggtttga 656  Q
             |||| ||||| ||||||||| ||||  ||||| ||||||||| ||||||  ||| | |||||||   ||||||||||||||||| ||||||    
T  34501075 aaaaga---gtttaaaaaaggccacgaaaggcactcaggttgcttagagagtaggacgagtttgatagtaaaa---ggcactgtctctcgacaagtttga 34501168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 467 - 552
Target Start/End: Original strand, 25945605 - 25945691
Alignment:
Q  467 tgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctc-agaacatgttgtgcaaaggttttga 552  Q
    |||||| |||||||| | |||||||||||||| |||||||| ||||||||||||| ||||| ||  |||||||||||| ||||||||    
T  25945605 tgttttcggcaaactacaggctagttctgattattacaagcaagaccgaactagagatctcaagggcatgttgtgcaatggttttga 25945691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 452 - 553
Target Start/End: Complemental strand, 31137690 - 31137588
Alignment:
Q  452 gtatttgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctca-gaacatgttgtgcaaaggtttt 550  Q
    |||| ||||| || |||||||  ||||||| || | ||||||||||| ||||||||||||||| |||||| |||||| || || ||||||||||||||||    
T  31137690 gtatatgtttgcctgtgttttcagcaaactacgaggtagttctgattgttacaagcgagaccggactagagatctcaggagcacgttgtgcaaaggtttt 31137591  T
Q  551 gat 553  Q
    |||    
T  31137590 gat 31137588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 484 - 528
Target Start/End: Complemental strand, 23010817 - 23010773
Alignment:
Q  484 gggctagttctgatttttacaagcgagaccgaactagaaatctca 528  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||    
T  23010817 gggctagttctgattattacaagcgagaccaaactagaaatctca 23010773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 735 - 810
Target Start/End: Complemental strand, 17380846 - 17380768
Alignment:
Q  735 ttgcttctgatcaatgttttcagcttaggag-aaacgaag-aaaagccaac-caactcaaccccctcttcttgggtttt 810  Q
    ||||||||||||| ||||||||||||||||| ||| |||| |||||||||| ||| ||||||||| ||||||| |||||    
T  17380846 ttgcttctgatcagtgttttcagcttaggagaaaaagaagaaaaagccaacacaattcaacccccccttcttgtgtttt 17380768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 456 - 526
Target Start/End: Original strand, 15966268 - 15966340
Alignment:
Q  456 ttgtttaccggtgtttttggcaaactgcgggctagttctgatttttac--aagcgagaccgaactagaaatct 526  Q
    |||||| || ||||||||| |||||| |||||||||||||||| ||||  | |||||||||||||||| ||||    
T  15966268 ttgtttgcctgtgtttttgacaaactacgggctagttctgattattacatatgcgagaccgaactagagatct 15966340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 488 - 553
Target Start/End: Complemental strand, 18560605 - 18560540
Alignment:
Q  488 tagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggttttgat 553  Q
    ||||| ||||| |||||||| |||  ||||||||||| | || |||||||||||||||||||||||    
T  18560605 tagttatgattattacaagcaagatagaactagaaattttaggacatgttgtgcaaaggttttgat 18560540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 736 - 810
Target Start/End: Complemental strand, 21624374 - 21624297
Alignment:
Q  736 tgcttctgatcaatgttttcagcttaggag-aaacgaag-aaaagccaac-caactcaaccccctcttcttgggtttt 810  Q
    |||||||||||| ||||||||||||||||| ||| |||| |||||||||| ||| ||||||||| ||||||| |||||    
T  21624374 tgcttctgatcagtgttttcagcttaggagaaaaagaagaaaaagccaacacaattcaacccccccttcttgtgtttt 21624297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 579 - 662
Target Start/End: Complemental strand, 23591014 - 23590934
Alignment:
Q  579 cacgaaatgcacctaggttacttagagagcaggacggattttagagtaaaaaagggcactgtctctcgacaggtttgagattgc 662  Q
    |||||||||||| |||||| |||||||||||| |||  ||| | |||||||   ||||||||||||| ||| ||||||||||||    
T  23591014 cacgaaatgcacttaggttgcttagagagcagaacgtgtttgatagtaaaa---ggcactgtctctcaacaagtttgagattgc 23590934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 454 - 550
Target Start/End: Complemental strand, 18376834 - 18376740
Alignment:
Q  454 atttgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggtttt 550  Q
    |||||||| || ||| ||||||||||| | | ||||||||||||| |||| ||||||| |||||||||||| |||  ||  ||||||||||||||||    
T  18376834 atttgtttgcctgtgattttggcaaacag-gagctagttctgattattactagcgagatcgaactagaaatgtcaagac-cgttgtgcaaaggtttt 18376740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 736 - 810
Target Start/End: Complemental strand, 19688015 - 19687939
Alignment:
Q  736 tgcttctgatcaatgttttcagcttaggagaaacgaag-aaaagccaac-caactcaaccccctcttcttgggtttt 810  Q
    |||||||||||| |||||||| | ||||||||| |||| |||| ||||| ||| ||||||||||||||||| |||||    
T  19688015 tgcttctgatcagtgttttcaacataggagaaaagaagaaaaaaccaacacaattcaaccccctcttcttgtgtttt 19687939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 735 - 777
Target Start/End: Complemental strand, 15301501 - 15301458
Alignment:
Q  735 ttgcttctgatcaatgttttcagcttaggag-aaacgaagaaaa 777  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||    
T  15301501 ttgcttctgatcagtgttttcagcttaggagaaaacgaagaaaa 15301458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 735 - 777
Target Start/End: Complemental strand, 25593354 - 25593311
Alignment:
Q  735 ttgcttctgatcaatgttttcagcttaggag-aaacgaagaaaa 777  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||    
T  25593354 ttgcttctgatcagtgttttcagcttaggagaaaacgaagaaaa 25593311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 628 - 662
Target Start/End: Complemental strand, 18560469 - 18560435
Alignment:
Q  628 aaaagggcactgtctctcgacaggtttgagattgc 662  Q
    ||||||||||||||||| |||||||||||||||||    
T  18560469 aaaagggcactgtctcttgacaggtttgagattgc 18560435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 492 - 550
Target Start/End: Complemental strand, 23591099 - 23591042
Alignment:
Q  492 tctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggtttt 550  Q
    ||||||| |||||||||||| ||||||||||||||||  ||  ||||||||||||||||    
T  23591099 tctgattattacaagcgagatcgaactagaaatctcaagac-cgttgtgcaaaggtttt 23591042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 485 - 550
Target Start/End: Original strand, 12418065 - 12418129
Alignment:
Q  485 ggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggtttt 550  Q
    |||||||||| ||| |||||||||||| |||||||||||| |||  ||  ||||||||||||||||    
T  12418065 ggctagttctaattattacaagcgagatcgaactagaaatgtcaagac-cgttgtgcaaaggtttt 12418129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 485 - 550
Target Start/End: Complemental strand, 12421581 - 12421517
Alignment:
Q  485 ggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggtttt 550  Q
    |||||||||| ||| |||||||||||| |||||||||||| |||  ||  ||||||||||||||||    
T  12421581 ggctagttctaattattacaagcgagatcgaactagaaatgtcaagac-cgttgtgcaaaggtttt 12421517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 735 - 768
Target Start/End: Complemental strand, 13601450 - 13601417
Alignment:
Q  735 ttgcttctgatcaatgttttcagcttaggagaaa 768  Q
    ||||||||||||| ||||||||||||||||||||    
T  13601450 ttgcttctgatcagtgttttcagcttaggagaaa 13601417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 571 - 658
Target Start/End: Complemental strand, 23010732 - 23010648
Alignment:
Q  571 aaaaacgccacgaaatgcacctaggttacttagagagcaggacggattttagagtaaaaaagggcactgtctctcgacaggtttgaga 658  Q
    ||||| |||||||| |||||  ||||| ||||||||||||| ||| ||| |   || |||| ||||||||||||| ||||||||||||    
T  23010732 aaaaaggccacgaagtgcactcaggttgcttagagagcaggtcgggtttga---tataaaaaggcactgtctctctacaggtttgaga 23010648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 5e-46; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 453 - 662
Target Start/End: Complemental strand, 17881459 - 17881253
Alignment:
Q  453 tatttgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggttttga 552  Q
    ||||||||||| |||||||| || ||||| |||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  17881459 tatttgtttactggtgttttcggtaaactacgggctagttatgattattacaagcgagaccgaactagaaatctcaggacatgttgtgcaaaggttttga 17881360  T
Q  553 tnnnnnnnnnncggtttgaaaaacgccacgaaatgcacctaggttacttagagagcaggacggattttagagtaaaaaagggcactgtctctcgacaggt 652  Q
    |          | |||||||||| |  |||||||||||  ||||||||||||||||| | |   ||||||||||||||| ||||||||||||||||||||    
T  17881359 t--aaaaaaaacagtttgaaaaaggttacgaaatgcactcaggttacttagagagcatggcatgttttagagtaaaaaa-ggcactgtctctcgacaggt 17881263  T
Q  653 ttgagattgc 662  Q
    ||||||||||    
T  17881262 ttgagattgc 17881253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 454 - 656
Target Start/End: Complemental strand, 17115283 - 17115084
Alignment:
Q  454 atttgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggttttgat 553  Q
    ||||||||||||||||||| |||||||| |||||||||||||||| |||||||||  |||||| |||||||| |||  | |||||||||||||||||||     
T  17115283 atttgtttaccggtgttttcggcaaactacgggctagttctgattattacaagcggaaccgaaatagaaatcccaggtcttgttgtgcaaaggttttga- 17115185  T
Q  554 nnnnnnnnnncggtttgaaaaacgccacgaaatgcacctaggttacttagagagcaggacggattttagag--taaaaaagggcactgtctctcgacagg 651  Q
              | |||||| ||| |||| |||||||||  ||||||| ||||||||| ||||| ||||||||  |||||||||||||||||||||||||||    
T  17115184 ----ggaaaacagtttgagaaaggccatgaaatgcactcaggttacctagagagcaagacgggttttagagtttaaaaaagggcactgtctctcgacagg 17115089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 515 - 662
Target Start/End: Complemental strand, 10310323 - 10310180
Alignment:
Q  515 aactagaaatctcagaacatgttgtgcaaaggttttgatnnnnnnnnnncggtttgaaaaacgccacgaaatgcacctaggttacttagagagcaggacg 614  Q
    ||||||||||||||| |||||||||| ||||||||||||           ||||||||||| ||||||||||||||  |||||||||||||||||| ||     
T  10310323 aactagaaatctcaggacatgttgtgaaaaggttttgatcgaaaat----ggtttgaaaaaggccacgaaatgcactcaggttacttagagagcagaaca 10310228  T
Q  615 gattttagagtaaaaaagggcactgtctctcgacaggtttgagattgc 662  Q
    | ||||||||||||||| ||||| |||||||||||||||||| |||||    
T  10310227 ggttttagagtaaaaaaaggcacggtctctcgacaggtttgaaattgc 10310180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 456 - 550
Target Start/End: Original strand, 20923114 - 20923208
Alignment:
Q  456 ttgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggtttt 550  Q
    ||||||||||||||||| || ||||| || ||||||||||||| |||||||||||||||||||| ||||||||| | |||  |||||||||||||    
T  20923114 ttgtttaccggtgttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggtttt 20923208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 468 - 553
Target Start/End: Complemental strand, 18098634 - 18098548
Alignment:
Q  468 gtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctca-gaacatgttgtgcaaaggttttgat 553  Q
    |||||||||||||| |||| ||||| ||||| ||||||||||||| |||||||| |||||| || ||||||||||| ||||||||||    
T  18098634 gtttttggcaaactacgggttagttatgattattacaagcgagactgaactagagatctcaggagcatgttgtgcataggttttgat 18098548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 456 - 543
Target Start/End: Original strand, 21668548 - 21668636
Alignment:
Q  456 ttgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctca-gaacatgttgtgcaa 543  Q
    |||||| || |||||||||||||||| |  ||||||||||||| |||||||||||||| ||||||| |||||| || ||||||||||||    
T  21668548 ttgtttgcctgtgtttttggcaaactacatgctagttctgattattacaagcgagaccaaactagagatctcatgagcatgttgtgcaa 21668636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 454 - 525
Target Start/End: Original strand, 7965587 - 7965658
Alignment:
Q  454 atttgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatc 525  Q
    ||||||||||| ||||||| |||||||| ||||||||||| |||| |||||| ||||||||||||| |||||    
T  7965587 atttgtttaccagtgttttcggcaaactacgggctagttcagattattacaaacgagaccgaactaaaaatc 7965658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 486 - 662
Target Start/End: Complemental strand, 9560785 - 9560613
Alignment:
Q  486 gctagttctgatttttacaagcgagaccgaactagaaatctc-agaacatgttgtgcaaaggttttgatnnnnnnnnnncggtttgaaaaacgccacgaa 584  Q
    ||||||||||||| | |||||||||||||||||||| ||||| ||  ||||||||||||||||||||||           ||||||||||| ||||  |     
T  9560785 gctagttctgattatcacaagcgagaccgaactagagatctcaagggcatgttgtgcaaaggttttgatcgaaaaaa---ggtttgaaaaaggccagcag 9560689  T
Q  585 atgcacctaggttacttagagagcaggacggattttagagtaaaaaagggcactgtctctcgacaggtttgagattgc 662  Q
    ||||||  ||||||||||||| |||||||  | ||||||  | |||| ||||||||||||||| ||||||||||||||    
T  9560688 atgcactcaggttacttagagggcaggac-aactttaga-aacaaaaaggcactgtctctcgataggtttgagattgc 9560613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 477 - 553
Target Start/End: Original strand, 12330731 - 12330808
Alignment:
Q  477 aaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctca-gaacatgttgtgcaaaggttttgat 553  Q
    ||||| |||||||||||||||| | |||||||||||||||||||| |||| | || |||||||||||||| |||||||    
T  12330731 aaactacgggctagttctgattatcacaagcgagaccgaactagagatcttaggagcatgttgtgcaaagattttgat 12330808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 457 - 550
Target Start/End: Original strand, 15124890 - 15124981
Alignment:
Q  457 tgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggtttt 550  Q
    ||||| || ||| |||||||||| || ||||||||||||||| |||||||||||| ||||||||||||||||  ||  ||||||||||||||||    
T  15124890 tgtttgcctgtgattttggcaaa-tgggggctagttctgattattacaagcgagatcgaactagaaatctcaagac-cgttgtgcaaaggtttt 15124981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 735 - 777
Target Start/End: Original strand, 2914531 - 2914573
Alignment:
Q  735 ttgcttctgatcaatgttttcagcttaggagaaacgaagaaaa 777  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  2914531 ttgcttctgatcagtgttttcagcttaggagaaacgaagaaaa 2914573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 487 - 662
Target Start/End: Original strand, 14960946 - 14961118
Alignment:
Q  487 ctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggttttgatnnnnnnnnnncggtttgaaaaacg-ccacgaaa 585  Q
    |||||||||||| |||||||||||| ||||||||||||||||  ||  | |||||||||||||| ||           | ||||||||| | |||| | |    
T  14960946 ctagttctgattattacaagcgagatcgaactagaaatctcaagacc-gatgtgcaaaggtttttatcggaaaaaagag-tttgaaaaagggccacaaga 14961043  T
Q  586 tgcacctaggttacttagagagcaggacggattttaga-gtaaaaaagggcactgtctctcgacaggtttgagattgc 662  Q
    |||||  ||||| ||||||||||||||||| ||||||| |||||| |   ||||||||||||||||||||||||||||    
T  14961044 tgcactcaggttgcttagagagcaggacgggttttagaagtaaaaga---cactgtctctcgacaggtttgagattgc 14961118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 487 - 662
Target Start/End: Original strand, 15390418 - 15390590
Alignment:
Q  487 ctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggttttgatnnnnnnnnnncggtttgaaaaacg-ccacgaaa 585  Q
    |||||||||||| |||||||||||| ||||||||||||||||  ||  | |||||||||||||| ||           | ||||||||| | |||| | |    
T  15390418 ctagttctgattattacaagcgagatcgaactagaaatctcaagacc-gatgtgcaaaggtttttatcggaaaaaagag-tttgaaaaagggccacaaga 15390515  T
Q  586 tgcacctaggttacttagagagcaggacggattttaga-gtaaaaaagggcactgtctctcgacaggtttgagattgc 662  Q
    |||||  ||||| ||||||||||||||||| ||||||| |||||| |   ||||||||||||||||||||||||||||    
T  15390516 tgcactcaggttgcttagagagcaggacgggttttagaagtaaaaga---cactgtctctcgacaggtttgagattgc 15390590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 736 - 810
Target Start/End: Complemental strand, 30025216 - 30025139
Alignment:
Q  736 tgcttctgatcaatgttttcagcttaggag-aaacgaag-aaaagccaac-caactcaaccccctcttcttgggtttt 810  Q
    |||||||||||||||||||||||||||||| |||||||| |||||| ||| ||| ||||||||| ||||||| |||||    
T  30025216 tgcttctgatcaatgttttcagcttaggagaaaacgaagaaaaagcaaacacaattcaacccccccttcttgtgtttt 30025139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 454 - 528
Target Start/End: Complemental strand, 7404867 - 7404794
Alignment:
Q  454 atttgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctca 528  Q
    ||||||||||  ||| |||||||||||   ||||||||||||||| ||||||  |||||||||||||||||||||    
T  7404867 atttgtttacttgtgattttggcaaacat-gggctagttctgattattacaatggagaccgaactagaaatctca 7404794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 454 - 528
Target Start/End: Original strand, 17139889 - 17139962
Alignment:
Q  454 atttgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctca 528  Q
    |||||||| || ||| ||||||||||| | ||||||||||||||| |||||||| ||| | ||||||||||||||    
T  17139889 atttgttttcctgtgattttggcaaacgg-gggctagttctgattattacaagccagatctaactagaaatctca 17139962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 735 - 810
Target Start/End: Complemental strand, 33604187 - 33604110
Alignment:
Q  735 ttgcttctgatcaatgttttcagcttaggag-aaacgaag-aaaagccaac-caactcaaccccctcttcttgggtttt 810  Q
    ||||||||||||| ||||||||||||||||| |||||||| |||||||||| ||| ||||||||| ||||||| |||||    
T  33604187 ttgcttctgatcagtgttttcagcttaggagaaaacgaagaaaaagccaacacaattcaaccccc-cttcttgtgtttt 33604110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 735 - 779
Target Start/End: Complemental strand, 9069043 - 9068998
Alignment:
Q  735 ttgcttctgatcaatgttttcagcttaggag-aaacgaagaaaagc 779  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||    
T  9069043 ttgcttctgatcagtgttttcagcttaggagaaaacgaagaaaagc 9068998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 736 - 810
Target Start/End: Original strand, 13138801 - 13138878
Alignment:
Q  736 tgcttctgatcaatgttttcagcttaggag-aaacgaag-aaaagccaac-caactcaaccccctcttcttgggtttt 810  Q
    ||||||||||||||||||||||| || ||| ||| |||| |||||||||| ||| ||||||||||||||||| |||||    
T  13138801 tgcttctgatcaatgttttcagcataagagaaaaagaagaaaaagccaacacaattcaaccccctcttcttgtgtttt 13138878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 735 - 777
Target Start/End: Original strand, 13261550 - 13261593
Alignment:
Q  735 ttgcttctgatcaatgttttcagcttaggag-aaacgaagaaaa 777  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||    
T  13261550 ttgcttctgatcaatgtgttcagcttaggagaaaacgaagaaaa 13261593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 735 - 777
Target Start/End: Complemental strand, 13681578 - 13681535
Alignment:
Q  735 ttgcttctgatcaatgttttcagcttaggag-aaacgaagaaaa 777  Q
    |||||||| |||||||||||||||||||||| ||||||||||||    
T  13681578 ttgcttctaatcaatgttttcagcttaggagaaaacgaagaaaa 13681535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 735 - 777
Target Start/End: Original strand, 16315412 - 16315455
Alignment:
Q  735 ttgcttctgatcaatgttttcagcttaggag-aaacgaagaaaa 777  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||    
T  16315412 ttgcttctgatcagtgttttcagcttaggagaaaacgaagaaaa 16315455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 571 - 658
Target Start/End: Original strand, 17132395 - 17132480
Alignment:
Q  571 aaaaacgccacgaaatgcacctaggttacttagagagcaggacggattttagagtaaaaaagggcactgtctctcgacaggtttgaga 658  Q
    ||||| ||||||||||||||  ||||| ||||||||||| ||||| ||| | | ||||||| || ||| |||||||||||||||||||    
T  17132395 aaaaatgccacgaaatgcactcaggttgcttagagagcatgacgggtttgata-taaaaaa-ggaactatctctcgacaggtttgaga 17132480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 736 - 777
Target Start/End: Complemental strand, 4493826 - 4493784
Alignment:
Q  736 tgcttctgatcaatgttttcagcttaggag-aaacgaagaaaa 777  Q
    |||||||||||| ||||||||||||||||| ||||||||||||    
T  4493826 tgcttctgatcagtgttttcagcttaggagaaaacgaagaaaa 4493784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 736 - 777
Target Start/End: Original strand, 13473363 - 13473405
Alignment:
Q  736 tgcttctgatcaatgttttcagcttaggag-aaacgaagaaaa 777  Q
    |||||||||||| ||||||||||||||||| ||||||||||||    
T  13473363 tgcttctgatcagtgttttcagcttaggagaaaacgaagaaaa 13473405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 735 - 768
Target Start/End: Original strand, 10884045 - 10884078
Alignment:
Q  735 ttgcttctgatcaatgttttcagcttaggagaaa 768  Q
    ||||||||||||| ||||||||||||||||||||    
T  10884045 ttgcttctgatcagtgttttcagcttaggagaaa 10884078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 736 - 810
Target Start/End: Original strand, 16557486 - 16557562
Alignment:
Q  736 tgcttctgatcaatgttttcagcttaggaga-aacgaag-aaaagccaac-caactcaaccccctcttcttgggtttt 810  Q
    |||||||||||| |||||||||||||||||| || |||| |||||||||| ||| ||||||||| ||||||| |||||    
T  16557486 tgcttctgatcagtgttttcagcttaggagataaagaagaaaaagccaacacaattcaaccccc-cttcttgtgtttt 16557562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 736 - 810
Target Start/End: Complemental strand, 16608176 - 16608100
Alignment:
Q  736 tgcttctgatcaatgttttcagcttaggaga-aacgaag-aaaagccaac-caactcaaccccctcttcttgggtttt 810  Q
    |||||||||||| |||||||||||||||||| || |||| |||||||||| ||| ||||||||| ||||||| |||||    
T  16608176 tgcttctgatcagtgttttcagcttaggagataaagaagaaaaagccaacacaattcaaccccc-cttcttgtgtttt 16608100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 94; Significance: 2e-45; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 454 - 662
Target Start/End: Original strand, 184182 - 184385
Alignment:
Q  454 atttgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggttttgat 553  Q
    |||||||||  |||||||| || ||||| |||||||||||||||| |||||||||||||| ||||||||||||||  |||||||||||||||||||||||    
T  184182 atttgtttaaaggtgttttcggaaaactacgggctagttctgattattacaagcgagaccaaactagaaatctcatgacatgttgtgcaaaggttttgat 184281  T
Q  554 nnnnnnnnnncggtttgaaaaacgccacgaaatgcacctaggttacttagagagcaggacggattttagagtaaaaaagggcactgtctctcgacaggtt 653  Q
              |||||||||||| ||||| | ||| ||  ||||||||||||||||| ||||| ||||||| | |||||||||||||||||||||||||||    
T  184282 ----cgaaaacggtttgaaaaaggccacaagatgtactcaggttacttagagagcaagacgggttttagaat-aaaaagggcactgtctctcgacaggtt 184376  T
Q  654 tgagattgc 662  Q
    |||||||||    
T  184377 tgagattgc 184385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 2e-45; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 457 - 661
Target Start/End: Complemental strand, 16227049 - 16226850
Alignment:
Q  457 tgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggttttgatnnn 556  Q
    |||||||||||||||| || ||||| |||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||| ||||||||       
T  16227049 tgtttaccggtgttttcggaaaactacgggctagttctgattattacaaacgagaccgaactagaaatctcaggacatgttgtgcaaatgttttgat--- 16226953  T
Q  557 nnnnnnncggtttgaaaaacgccacgaaatgcacctaggttacttagagagcaggacggattttagagtaaaaaagggcactgtctctcgacaggtttga 656  Q
           |||||||||||| ||||||||||||||  |||||||||||||||||||||   ||||||||| |||||||||| | ||||| || ||||||||    
T  16226952 -aaaaaacggtttgaaaaaggccacgaaatgcactcaggttacttagagagcaggacatgttttagagt-aaaaagggcaatatctcttgataggtttga 16226855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 454 - 662
Target Start/End: Original strand, 22928244 - 22928446
Alignment:
Q  454 atttgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggttttgat 553  Q
    ||||||||||||||||||| | |||||| |||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||| |    
T  22928244 atttgtttaccggtgttttcgacaaactacgggctagttctgattattacaagcgagaacgaactagaaatctcaggacatgttgtgcaaaggttttgtt 22928343  T
Q  554 nnnnnnnnnncggtttgaaaaacgccacgaaatgcacctaggttacttagagagcaggacggattttagagtaaaaaagggcactgtctctcgacaggtt 653  Q
              |||||||||||| ||||||||| | | ||  ||||||||||||||||||||  |||||||  |||||| ||||  |||||||||||||||    
T  22928344 ----cgaaaacggtttgaaaaaggccacgaaacgta-ctcagttacttagagagcaggacgagttttagaccaaaaaa-ggcaaagtctctcgacaggtt 22928437  T
Q  654 tgagattgc 662  Q
    |||||||||    
T  22928438 tgagattgc 22928446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 452 - 659
Target Start/End: Original strand, 13908464 - 13908666
Alignment:
Q  452 gtatttgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggttttg 551  Q
    |||||| ||||| |||||||| |||||||| |||||||| ||||||| ||||||||| |||||||||||||||||||| |||||| |||| |||||||||    
T  13908464 gtatttatttacaggtgttttcggcaaactacgggctagatctgattattacaagcgggaccgaactagaaatctcaggacatgtagtgcgaaggttttg 13908563  T
Q  552 atnnnnnnnnnncggtttgaaaaacgccacgaaatgcacctaggttacttagagagcaggacggattttagagtaaaaaagggcactgtctctcgacagg 651  Q
    ||          | |||||||||| ||||| | ||||||  |||||||||| |||||||||| || ||| ||   ||||||| ||||||||||| |||||    
T  13908564 at----cgaaaacagtttgaaaaaggccacaacatgcactcaggttacttacagagcaggac-gagttttgaaataaaaaggacactgtctctccacagg 13908658  T
Q  652 tttgagat 659  Q
    ||||||||    
T  13908659 tttgagat 13908666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 457 - 661
Target Start/End: Complemental strand, 16224449 - 16224251
Alignment:
Q  457 tgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggttttgatnnn 556  Q
    ||||||||||| |||  |||||||| || ||||||| ||||| |||||||||| |||||||||||||| |||  |||||||||||||||||||||||       
T  16224449 tgtttaccggtatttc-ggcaaactacgtgctagttttgattattacaagcgataccgaactagaaatttcaagacatgttgtgcaaaggttttgat--- 16224354  T
Q  557 nnnnnnncggtttgaaaaacgccacgaaatgcacctaggttacttagagagcaggacggattttagagtaaaaaagggcactgtctctcgacaggtttga 656  Q
           |||||||||||| ||||||| | ||||  | |||||||||||| |||||| || ||| ||   ||||||||||||||||||||| ||||||||    
T  16224353 -cgaaaacggtttgaaaaaggccacgagaggcactcatgttacttagagaccaggac-gagttttgaaataaaaagggcactgtctctcgataggtttga 16224256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 736 - 768
Target Start/End: Original strand, 49554383 - 49554415
Alignment:
Q  736 tgcttctgatcaatgttttcagcttaggagaaa 768  Q
    |||||||||||||||||||||||||||||||||    
T  49554383 tgcttctgatcaatgttttcagcttaggagaaa 49554415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 735 - 777
Target Start/End: Original strand, 16659433 - 16659476
Alignment:
Q  735 ttgcttctgatcaatgttttcagcttaggag-aaacgaagaaaa 777  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||    
T  16659433 ttgcttctgatcagtgttttcagcttaggagaaaacgaagaaaa 16659476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 738 - 777
Target Start/End: Complemental strand, 41494284 - 41494245
Alignment:
Q  738 cttctgatcaatgttttcagcttaggagaaacgaagaaaa 777  Q
    |||||||||| |||||||||||||||||||| ||||||||    
T  41494284 cttctgatcagtgttttcagcttaggagaaaagaagaaaa 41494245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 454 - 528
Target Start/End: Original strand, 16925215 - 16925288
Alignment:
Q  454 atttgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctca 528  Q
    |||||||| || ||| ||||||||||| | ||||  ||||||||| |||||| ||||| ||||||||||||||||    
T  16925215 atttgtttgcctgtgattttggcaaacgg-gggcatgttctgattattacaaacgagatcgaactagaaatctca 16925288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 736 - 777
Target Start/End: Original strand, 29952310 - 29952352
Alignment:
Q  736 tgcttctgatcaatgttttcagcttaggag-aaacgaagaaaa 777  Q
    |||||||||||| ||||||||||||||||| ||||||||||||    
T  29952310 tgcttctgatcagtgttttcagcttaggagaaaacgaagaaaa 29952352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 736 - 777
Target Start/End: Original strand, 30001464 - 30001506
Alignment:
Q  736 tgcttctgatcaatgttttcagcttaggag-aaacgaagaaaa 777  Q
    |||||||||||| ||||||||||||||||| ||||||||||||    
T  30001464 tgcttctgatcagtgttttcagcttaggagaaaacgaagaaaa 30001506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 736 - 810
Target Start/End: Complemental strand, 14954694 - 14954618
Alignment:
Q  736 tgcttctgatcaatgttttcagcttaggag-aaacgaag-aaaagccaac-caactcaaccccctcttcttgggtttt 810  Q
    |||||||||||| ||||||||||||||||| ||| |||| |||||||||| ||| ||||||||| ||||||| |||||    
T  14954694 tgcttctgatcagtgttttcagcttaggagaaaaagaagaaaaagccaacacaattcaaccccc-cttcttgtgtttt 14954618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 93; Significance: 8e-45; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 456 - 662
Target Start/End: Original strand, 50127 - 50331
Alignment:
Q  456 ttgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggttttgatnn 555  Q
    ||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||| ||||||||||||  |||||||||||||||||||||||      
T  50127 ttgtttaccggtgtttttgacaaactacgggctagttctgattattacaagcgagaccgagctagaaatctcatgacatgttgtgcaaaggttttgataa 50226  T
Q  556 nnnnnnnncggtttgaaaaacgccacgaaatgcacctaggttacttagagagcaggacggattttagagtaaaaaagggcactgtctctcgacaggtttg 655  Q
             ||||| ||||| ||||||||||||||  |||||||||||| |||||||||| || ||||   ||||| |||| ||||||||||||||||||    
T  50227 aaaaaaat-ggtttaaaaaaggccacgaaatgcactcaggttacttagaaagcaggacgggttgtagaacgaaaaa-ggcattgtctctcgacaggtttg 50324  T
Q  656 agattgc 662  Q
    |||||||    
T  50325 agattgc 50331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 456 - 662
Target Start/End: Original strand, 222396 - 222596
Alignment:
Q  456 ttgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggttttgatnn 555  Q
    |||||||||||||||||  ||||||  |||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||| ||||||||      
T  222396 ttgtttaccggtgttttcagcaaacaacgggctagttctgattattacaagcgagaccgaactagaaatctcaagacatgttgtgcaaatgttttgat-- 222493  T
Q  556 nnnnnnnncggtttgaaaaacgccacgaaatgcacctaggttacttagagagcaggacggattttagagtaaaaaagggcactgtctctcgacaggtttg 655  Q
            |||||| ||||| ||||||| ||||||  ||||||||||||||| ||||||  ||||  | ||||||  | |||||||||| ||||||||||    
T  222494 --cgaaaacggttttaaaaaggccacgagatgcactcaggttacttagagagaaggacgagttttgaaataaaaa--gacactgtctcttgacaggtttg 222589  T
Q  656 agattgc 662  Q
    |||||||    
T  222590 agattgc 222596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 83; Significance: 7e-39; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 457 - 662
Target Start/End: Complemental strand, 20849 - 20649
Alignment:
Q  457 tgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggttttgatnnn 556  Q
    |||||||||||||||| |||||||| |||||||||||| ||| || ||||||||| ||||| |||||||| || |||||||||| ||||||||||||       
T  20849 tgtttaccggtgttttcggcaaactacgggctagttcttattattccaagcgagatcgaacaagaaatcttaggacatgttgtgaaaaggttttgat--- 20753  T
Q  557 nnnnnnncggtttgaaaaacgccacgaaatgcacctaggttacttagagagcaggacggattttagagtaaaaaagggcactgtctctcgacaggtttga 656  Q
           |||||||||||| | ||||||||||||  ||||||||||||||| ||||||| |||||| |||||||| |||||||| |||||||| |||||     
T  20752 -cgaaaacggtttgaaaaaggacacgaaatgcactcaggttacttagagagaaggacgggttttagggtaaaaaa-ggcactgtatctcgacatgtttgc 20655  T
Q  657 gattgc 662  Q
    ||||||    
T  20654 gattgc 20649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 1e-37; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 483 - 642
Target Start/End: Complemental strand, 21301670 - 21301515
Alignment:
Q  483 cgggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggttttgatnnnnnnnnnncggtttgaaaaacgccacg 582  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||          |||||||||||| ||||||    
T  21301670 cgggctagttctgattattacaagcgagaccgaactagaaatctcaggacatgttgtacaaaggttttgat----aaaaaacggtttgaaaaaggccacg 21301575  T
Q  583 aaatgcacctaggttacttagagagcaggacggattttagagtaaaaaagggcactgtct 642  Q
    | ||||||  ||||||||||||||||||||||| ||||  | ||||||||||||||||||    
T  21301574 agatgcactcaggttacttagagagcaggacgggttttgaaataaaaaagggcactgtct 21301515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 455 - 614
Target Start/End: Original strand, 23242058 - 23242213
Alignment:
Q  455 tttgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggttttgatn 554  Q
    ||||||||||||||||||||||||||| |||||| ||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||     
T  23242058 tttgtttaccggtgtttttggcaaactacgggcttgttctgattattacaagcaagaccgaactagaaatctcaggacatgttgtgcaaaggttttgat- 23242156  T
Q  555 nnnnnnnnncggtttgaaaaacgccacgaaatgcacctaggttacttagagagcaggacg 614  Q
             |||||||||||| ||| ||| ||||||  |||||||||| |||||||||||    
T  23242157 ---cgaaaacggtttgaaaaaggcctcgagatgcactcaggttacttaaagagcaggacg 23242213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 454 - 660
Target Start/End: Original strand, 17983106 - 17983308
Alignment:
Q  454 atttgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggttttgat 553  Q
    ||||||||||  | ||||| ||||||||  ||||||||| ||||  |||||| |||||| ||| |||||||||||| |||||||||||||||||||||||    
T  17983106 atttgtttacttgggttttcggcaaactatgggctagttatgataattacaaacgagactgaagtagaaatctcaggacatgttgtgcaaaggttttgat 17983205  T
Q  554 nnnnnnnnnncggtttgaaaaacgccacgaaatgcacctaggttacttagagagcaggacggattttagagtaaaaaagggcactgtctctcgacaggtt 653  Q
              |||||||||||| ||||||| ||||||  | |||||||||||||||||| |  ||||  | ||||||||||||| |||||||||||||||    
T  17983206 cgaaaa----cggtttgaaaaaggccacgagatgcactcaagttacttagagagcaggatgagttttgaaataaaaaagggcaccgtctctcgacaggtt 17983301  T
Q  654 tgagatt 660  Q
    |||||||    
T  17983302 tgagatt 17983308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 457 - 662
Target Start/End: Complemental strand, 24093582 - 24093383
Alignment:
Q  457 tgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggttttgatnnn 556  Q
    |||||||  |||||||||  ||||| |||| ||||||||||| ||||| ||||| |||||||| ||||||||  |||||||||| ||||||||||||       
T  24093582 tgtttactagtgtttttgaaaaactacgggttagttctgattattaca-gcgaggccgaactataaatctcaagacatgttgtgaaaaggttttgatcga 24093484  T
Q  557 nnnnnnncggtttgaaaaacgccacgaaatgcacctaggttacttagagagcaggacggattttagagtaaaaaagggcactgtctctcgacaggtttga 656  Q
            ||||||||||| | ||||||||||||  |||||||||||||| |||||||  |||||||||| ||||||||||| |||||||||||||||||    
T  24093483 aaat----ggtttgaaaaaggtcacgaaatgcactcaggttacttagagatcaggacgagttttagagta-aaaagggcactatctctcgacaggtttga 24093389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 466 - 662
Target Start/End: Original strand, 23817915 - 23818108
Alignment:
Q  466 gtgtttttggcaaactgcgggctagttctgatttttacaa--gcgagaccgaactagaaatctca-gaacatgttgtgcaaaggttttgatnnnnnnnnn 562  Q
    ||||||| |||||||| |||||||||||||||| ||||||  |||||||||||||||| |||||| || ||||||||||||||||||||||             
T  23817915 gtgttttcggcaaactacgggctagttctgattattacaagcgcgagaccgaactagagatctcaggagcatgttgtgcaaaggttttgatcacaaaaa- 23818013  T
Q  563 ncggtttgaaaaacgccacgaaatgcacctaggttacttagagagcaggacggattttagagtaaa-aaagggcactgtctctcgacaggtttgagattg 661  Q
      ||||| ||||   |||||| ||||||  ||||||||||||||||||||||  |||    ||||| ||| |||||||||||||||||||||||||||||    
T  23818014 --ggtttaaaaagaaccacgagatgcactcaggttacttagagagcaggacgagttt----gtaaacaaaaggcactgtctctcgacaggtttgagattg 23818107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 510 - 662
Target Start/End: Complemental strand, 12149605 - 12149458
Alignment:
Q  510 gaccgaactagaaatctcagaacatgttgtgcaaaggttttgatnnnnnnnnnncggtttgaaaaacgccacgaaatgcacctaggttacttagagagca 609  Q
    |||||||||| |||| |||| |||||||||||||||||||||||          |||||||||||| ||||||| ||||||  |||||||||||||||||    
T  12149605 gaccgaactataaatttcaggacatgttgtgcaaaggttttgatcgaaag----cggtttgaaaaaggccacgagatgcactcaggttacttagagagca 12149510  T
Q  610 ggacggattttagagtaaaaaagggcactgtctctcgacaggtttgagattgc 662  Q
     ||||| ||||  | | |||||||||| |||||||||||||||||||||||||    
T  12149509 agacgggtttttaaat-aaaaagggcattgtctctcgacaggtttgagattgc 12149458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 488 - 552
Target Start/End: Original strand, 9006710 - 9006775
Alignment:
Q  488 tagttctgatttttacaagcgagaccgaactagaaatctcagaa-catgttgtgcaaaggttttga 552  Q
    ||||||||||| ||||||||||||| |||||||| ||||||||| |||||||||||||||||||||    
T  9006710 tagttctgattattacaagcgagactgaactagagatctcagaagcatgttgtgcaaaggttttga 9006775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 593 - 662
Target Start/End: Original strand, 21301762 - 21301831
Alignment:
Q  593 aggttacttagagagcaggacggattttagagtaaaaaagggcactgtctctcgacaggtttgagattgc 662  Q
    ||||||||||||||||||| ||  ||||||||||||| |||||| ||||||||||||| |||||||||||    
T  21301762 aggttacttagagagcagggcgagttttagagtaaaagagggcaatgtctctcgacagctttgagattgc 21301831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 601 - 662
Target Start/End: Original strand, 21301897 - 21301958
Alignment:
Q  601 tagagagcaggacggattttagagtaaaaaagggcactgtctctcgacaggtttgagattgc 662  Q
    ||||||||||||| | |||||||||||| |||||||||||||||| ||||||||||||||||    
T  21301897 tagagagcaggacaggttttagagtaaacaagggcactgtctctcaacaggtttgagattgc 21301958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 466 - 551
Target Start/End: Complemental strand, 921514 - 921428
Alignment:
Q  466 gtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctc-agaacatgttgtgcaaaggttttg 551  Q
    |||||||  ||||||| |||||||||||||||| |||||||| |||||||| |||| |||||  || ||||||||||||||||||||    
T  921514 gtgttttcagcaaactacgggctagttctgattattacaagcaagaccgaagtagagatctcgggagcatgttgtgcaaaggttttg 921428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 488 - 550
Target Start/End: Complemental strand, 15927809 - 15927747
Alignment:
Q  488 tagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggtttt 550  Q
    |||||||| || |||||||||||||||||||||| ||||||| ||| ||||||||||||||||    
T  15927809 tagttctgtttattacaagcgagaccgaactagagatctcaggacacgttgtgcaaaggtttt 15927747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 454 - 550
Target Start/End: Original strand, 22263735 - 22263829
Alignment:
Q  454 atttgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggtttt 550  Q
    |||||||| || ||| ||||||||||| |  |||||||||||||  ||||||||||||||||| |||||||||||  || |||||||||||||||||    
T  22263735 atttgtttgcctgtgattttggcaaac-gatggctagttctgatcattacaagcgagaccgaattagaaatctcaagac-tgttgtgcaaaggtttt 22263829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 484 - 550
Target Start/End: Original strand, 22814916 - 22814981
Alignment:
Q  484 gggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggtttt 550  Q
    ||||||||||||||| ||||||||||||  |||||||||||||||  ||  ||||||||||||||||    
T  22814916 gggctagttctgattattacaagcgagattgaactagaaatctcaagac-cgttgtgcaaaggtttt 22814981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 572 - 662
Target Start/End: Original strand, 9006792 - 9006880
Alignment:
Q  572 aaaacgccacgaaatgcacctaggttacttagagagcaggacggattttag-agtaaaaaagggcactgtctctcgacaggtttgagattgc 662  Q
    |||| ||||||| ||||||  ||||| ||||||||||||||| || ||||| |||  ||||||||||||||||||||||  |||||||||||    
T  9006792 aaaaggccacgagatgcactcaggttgcttagagagcaggac-gagtttagaagt--aaaagggcactgtctctcgacatatttgagattgc 9006880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 484 - 528
Target Start/End: Complemental strand, 24478134 - 24478090
Alignment:
Q  484 gggctagttctgatttttacaagcgagaccgaactagaaatctca 528  Q
    |||||||||||||||||||||||||||| ||||| | ||||||||    
T  24478134 gggctagttctgatttttacaagcgagatcgaacgaaaaatctca 24478090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 454 - 542
Target Start/End: Complemental strand, 12669165 - 12669075
Alignment:
Q  454 atttgtttaccggtgtttttggcaaac--tgcgggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgca 542  Q
    |||||||||||||||||||||| ||||  | |||||| ||| ||||| ||||||||  || | ||| |||||||  |||||||||||||||    
T  12669165 atttgtttaccggtgtttttggtaaacaatacgggctggttttgattattacaagcaggatcaaaccagaaatcatagaacatgttgtgca 12669075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 735 - 777
Target Start/End: Original strand, 16682126 - 16682169
Alignment:
Q  735 ttgcttctgatcaatgttttcagcttaggag-aaacgaagaaaa 777  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||    
T  16682126 ttgcttctgatcattgttttcagcttaggagaaaacgaagaaaa 16682169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 735 - 777
Target Start/End: Complemental strand, 17007588 - 17007545
Alignment:
Q  735 ttgcttctgatcaatgttttcagcttaggag-aaacgaagaaaa 777  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||    
T  17007588 ttgcttctgatcagtgttttcagcttaggagaaaacgaagaaaa 17007545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 735 - 777
Target Start/End: Complemental strand, 25163349 - 25163306
Alignment:
Q  735 ttgcttctgatcaatgttttcagcttaggag-aaacgaagaaaa 777  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||    
T  25163349 ttgcttctgatcagtgttttcagcttaggagaaaacgaagaaaa 25163306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 735 - 768
Target Start/End: Original strand, 17541362 - 17541395
Alignment:
Q  735 ttgcttctgatcaatgttttcagcttaggagaaa 768  Q
    ||||||||||||| ||||||||||||||||||||    
T  17541362 ttgcttctgatcagtgttttcagcttaggagaaa 17541395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 736 - 810
Target Start/End: Original strand, 18122006 - 18122082
Alignment:
Q  736 tgcttctgatcaatgttttcagcttaggag-aaacgaag-aaaagccaac-caactcaaccccctcttcttgggtttt 810  Q
    |||||||||||||||||||||||| ||||| ||| |||| |||||||||| ||| ||||||||| ||||||| |||||    
T  18122006 tgcttctgatcaatgttttcagctaaggagaaaaagaagaaaaagccaacacaattcaaccccc-cttcttgtgtttt 18122082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 735 - 768
Target Start/End: Complemental strand, 19153302 - 19153269
Alignment:
Q  735 ttgcttctgatcaatgttttcagcttaggagaaa 768  Q
    ||||||||||||| ||||||||||||||||||||    
T  19153302 ttgcttctgatcagtgttttcagcttaggagaaa 19153269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 735 - 768
Target Start/End: Original strand, 30422303 - 30422336
Alignment:
Q  735 ttgcttctgatcaatgttttcagcttaggagaaa 768  Q
    ||||||||||||| ||||||||||||||||||||    
T  30422303 ttgcttctgatcagtgttttcagcttaggagaaa 30422336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 74; Significance: 2e-33; HSPs: 3)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 454 - 656
Target Start/End: Original strand, 18011 - 18209
Alignment:
Q  454 atttgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggttttgat 553  Q
    ||||||||||||||||||| |||||||| | |||||||||||||| ||||||||| || ||||||||||||  ||  ||||||||||||||||||||||     
T  18011 atttgtttaccggtgttttcggcaaactacaggctagttctgattattacaagcgggatcgaactagaaattccacgacatgttgtgcaaaggttttga- 18109  T
Q  554 nnnnnnnnnncggtttgaaaaacgccacgaaatgcacctaggttacttagagagcaggacggattttagag-taaaaaagggcactgtctctcgacaggt 652  Q
              | |||||||||| |||| |||||||||  ||||||||||||| ||| ||| | |||||| | ||||||||||||||||||||||| ||||    
T  18110 ----ggaaaacagtttgaaaaatgccatgaaatgcactcaggttacttagagcgcaagacaggttttagggttaaaaaagggcactgtctctcgagaggt 18205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 454 - 656
Target Start/End: Original strand, 25903 - 26101
Alignment:
Q  454 atttgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggttttgat 553  Q
    ||||||||||||||||||| |||||||| | |||||||||||||| ||||||||| || ||||||||||||  ||  ||||||||||||||||||||||     
T  25903 atttgtttaccggtgttttcggcaaactacaggctagttctgattattacaagcgggatcgaactagaaattccacgacatgttgtgcaaaggttttga- 26001  T
Q  554 nnnnnnnnnncggtttgaaaaacgccacgaaatgcacctaggttacttagagagcaggacggattttagag-taaaaaagggcactgtctctcgacaggt 652  Q
              | |||||||||| |||| |||||||||  ||||||||||||| ||| ||| | |||||| | ||||||||||||||||||||||| ||||    
T  26002 ----ggaaaacagtttgaaaaatgccatgaaatgcactcaggttacttagagcgcaagacaggttttagggttaaaaaagggcactgtctctcgagaggt 26097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 736 - 777
Target Start/End: Complemental strand, 905 - 863
Alignment:
Q  736 tgcttctgatcaatgttttcagcttaggag-aaacgaagaaaa 777  Q
    |||||||||||| ||||||||||||||||| ||||||||||||    
T  905 tgcttctgatcagtgttttcagcttaggagaaaacgaagaaaa 863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 7e-30; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 454 - 662
Target Start/End: Complemental strand, 18523324 - 18523120
Alignment:
Q  454 atttgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctca-gaacatgttgtgcaaaggttttga 552  Q
    ||||||||||  ||||||| |||||||| | ||||| |||||||| |||||||||||| |||||||||||||| | || |||||||||||||||||| ||    
T  18523324 atttgtttacaagtgttttcggcaaactacaggctaattctgattattacaagcgagatcgaactagaaatcttaggagcatgttgtgcaaaggtttcga 18523225  T
Q  553 tnnnnnnnnnncggtttgaaaaacgccacgaaatgcacctaggttacttagagagcaggacggattttagagtaaaaaagggcactgtctctcgacaggt 652  Q
    |           ||||||||||| || |||| |||||| ||| |||||||||||||||||||| |||| || | ||| |||||||||||| | |||||||    
T  18523224 tcgaaaaa----ggtttgaaaaaggcgacgagatgcacttagtttacttagagagcaggacgggtttt-gaattaaagagggcactgtcttttgacaggt 18523130  T
Q  653 ttgagattgc 662  Q
    ||||||||||    
T  18523129 ttgagattgc 18523120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 454 - 615
Target Start/End: Original strand, 25401485 - 25401646
Alignment:
Q  454 atttgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctca-gaacatgttgtgcaaaggttttga 552  Q
    |||||||| ||  |||||| || ||||| |||||||||||||||| |||||||||| ||||||||| | |||||| || |||||||||||||||||||||    
T  25401485 atttgtttgcctatgttttcggaaaactacgggctagttctgattattacaagcgataccgaactacagatctcaggagcatgttgtgcaaaggttttga 25401584  T
Q  553 tnnnnnnnnnncggtttgaaaaa-cgccacgaaatgcacctaggttacttagagagcaggacgg 615  Q
    |           |||||||||||  ||||||| ||||||  |||||||||||||||||||||||    
T  25401585 tcgaaaaaat--ggtttgaaaaagagccacgagatgcactcaggttacttagagagcaggacgg 25401646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 567 - 662
Target Start/End: Complemental strand, 22533973 - 22533879
Alignment:
Q  567 tttgaaaaacgccacgaaatgcacctaggttacttagagagcaggacggattttagagtaaaaaagggcactgtctctcgacaggtttgagattgc 662  Q
    ||||||||| | ||||| ||||||  |||||||||||||||||||||| |||||  | |||||| || ||||||||||||||||||||||||||||    
T  22533973 tttgaaaaaggtcacgagatgcactcaggttacttagagagcaggacgaattttgaaataaaaatgg-cactgtctctcgacaggtttgagattgc 22533879  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 485 - 544
Target Start/End: Original strand, 20886343 - 20886402
Alignment:
Q  485 ggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaa 544  Q
    |||||||||||||| ||||||| |||||||||||||| ||||||||||| ||||||||||    
T  20886343 ggctagttctgattgttacaagtgagaccgaactagagatctcagaacacgttgtgcaaa 20886402  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 466 - 662
Target Start/End: Complemental strand, 10159170 - 10158977
Alignment:
Q  466 gtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctca-gaacatgttgtgcaaaggttttgatnnnnnnnnnnc 564  Q
    ||||||||  |||||  |||||||||||| ||| |||||||||||||||||||||| |||||| ||  |||||||||||||||||| ||               
T  10159170 gtgtttttaacaaaccacgggctagttctaattcttacaagcgagaccgaactagagatctcaggagtatgttgtgcaaaggttttaatcgaaaaaag-- 10159073  T
Q  565 ggtttgaaaaa-cgccacgaaatgcacctaggttacttagagagcaggacggattttagagtaaaaaagggcactgtctctcgacaggtttgagattgc 662  Q
    |||||||||||  ||||||| ||||||  ||||||||||||||||||||  | |||  |   || ||| |||| |||||||||||||||||||||||||    
T  10159072 ggtttgaaaaagagccacgagatgcactcaggttacttagagagcaggaaaggtttgtg---aagaaaaggcattgtctctcgacaggtttgagattgc 10158977  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 579 - 662
Target Start/End: Complemental strand, 21291249 - 21291169
Alignment:
Q  579 cacgaaatgcacctaggttacttagagagcaggacggattttagagtaaaaaagggcactgtctctcgacaggtttgagattgc 662  Q
    ||||||||||||  ||||| ||||||||||||||||| ||| | |||||||   |||||| |||||||||||||||||||||||    
T  21291249 cacgaaatgcactcaggttgcttagagagcaggacgggtttgatagtaaaa---ggcactatctctcgacaggtttgagattgc 21291169  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 454 - 528
Target Start/End: Complemental strand, 21291372 - 21291299
Alignment:
Q  454 atttgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctca 528  Q
    |||||||| || ||| |||||| |||| | ||||||||||||||| |||||| ||||| ||||||||||||||||    
T  21291372 atttgtttgcctgtgattttggaaaac-gtgggctagttctgattattacaatcgagatcgaactagaaatctca 21291299  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 470 - 550
Target Start/End: Original strand, 4599315 - 4599393
Alignment:
Q  470 ttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggtttt 550  Q
    ||||||||||| | ||||||||||||||| | |||||||||| |||||||||||| |||  ||  ||||||||||||||||    
T  4599315 ttttggcaaacag-gggctagttctgattataacaagcgagatcgaactagaaatttcaagac-cgttgtgcaaaggtttt 4599393  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 484 - 528
Target Start/End: Original strand, 20146775 - 20146819
Alignment:
Q  484 gggctagttctgatttttacaagcgagaccgaactagaaatctca 528  Q
    ||||||||||||||| |||||||||||| |||||| |||||||||    
T  20146775 gggctagttctgattattacaagcgagatcgaacttgaaatctca 20146819  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 736 - 777
Target Start/End: Original strand, 20959827 - 20959869
Alignment:
Q  736 tgcttctgatcaatgttttcagcttaggag-aaacgaagaaaa 777  Q
    |||||||||||| ||||||||||||||||| ||||||||||||    
T  20959827 tgcttctgatcagtgttttcagcttaggagaaaacgaagaaaa 20959869  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 736 - 777
Target Start/End: Original strand, 22428135 - 22428177
Alignment:
Q  736 tgcttctgatcaatgttttcagcttaggag-aaacgaagaaaa 777  Q
    |||||||||||| ||||||||||||||||| ||||||||||||    
T  22428135 tgcttctgatcagtgttttcagcttaggagaaaacgaagaaaa 22428177  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 488 - 526
Target Start/End: Original strand, 25400435 - 25400473
Alignment:
Q  488 tagttctgatttttacaagcgagaccgaactagaaatct 526  Q
    ||||||||||| |||||||||||| ||||||||||||||    
T  25400435 tagttctgattattacaagcgagatcgaactagaaatct 25400473  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 501 - 550
Target Start/End: Complemental strand, 33129287 - 33129239
Alignment:
Q  501 tacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggtttt 550  Q
    ||||||||||| ||||||||||||||||  || |||||||||||||||||    
T  33129287 tacaagcgagatcgaactagaaatctcaagac-tgttgtgcaaaggtttt 33129239  T

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Target: scaffold0031 (Bit Score: 61; Significance: 1e-25; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 454 - 662
Target Start/End: Original strand, 38085 - 38291
Alignment:
Q  454 atttgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctca-gaacatgttgtgcaaaggttttga 552  Q
    |||||||| || ||| ||| |||||||| |||||||||||||||| |||||| |||||||||||||||||||||| || |||||||||||||| ||||||    
T  38085 atttgtttgcctgtgctttcggcaaactacgggctagttctgattattacaaacgagaccgaactagaaatctcaggagcatgttgtgcaaagattttga 38184  T
Q  553 tnnnnnnnnnncggtttga-aaaacgccacgaaatgcacctaggttacttagagagcaggacggattt-tagagtaaaaaagggcactgtctctcgacag 650  Q
    |           ||||| | |||  ||||||| ||||||  ||||||||||||||||||||||| ||| ||    || ||| ||||||||||||||||||    
T  38185 ttcgaaaaaag-ggtttaataaagagccacgagatgcactcaggttacttagagagcaggacgggtttcta----aagaaaaggcactgtctctcgacag 38279  T
Q  651 gtttgagattgc 662  Q
    ||||||||||||    
T  38280 gtttgagattgc 38291  T

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Target: scaffold0059 (Bit Score: 55; Significance: 4e-22; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 572 - 662
Target Start/End: Original strand, 29133 - 29222
Alignment:
Q  572 aaaacgccacgaaatgcacctaggttacttagagagcaggacggattttagagtaaaaaagggcactgtctctcgacaggtttgagattgc 662  Q
    |||| ||||| ||||||||  ||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||| |||||||||||    
T  29133 aaaaggccacaaaatgcactcaggttacttagagagcaagacggattttagagt-aaaaagggcactgtctttcgacagttttgagattgc 29222  T

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Target: scaffold0338 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 457 - 553
Target Start/End: Original strand, 16982 - 17079
Alignment:
Q  457 tgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctca-gaacatgttgtgcaaaggttttgat 553  Q
    ||||| || ||||||| |||||||| |||||||||||||||| |||||||| | | ||||||||| |||||| |  ||||||||||||| ||||||||    
T  16982 tgtttgcctgtgttttcggcaaactacgggctagttctgattattacaagcaaaatcgaactagagatctcatgggcatgttgtgcaaatgttttgat 17079  T

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Target: scaffold0115 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 735 - 775
Target Start/End: Complemental strand, 17616 - 17576
Alignment:
Q  735 ttgcttctgatcaatgttttcagcttaggagaaacgaagaa 775  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  17616 ttgcttctgatcagtgttttcagcttaggagaaaagaagaa 17576  T

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Target: scaffold0054 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 454 - 550
Target Start/End: Complemental strand, 77294 - 77200
Alignment:
Q  454 atttgtttaccggtgtttttggcaaactgcgggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggtttt 550  Q
    ||||||||||| ||| ||||||||||| | |||||||||  |||| ||||||||| ||  |||||||||||||||  ||  ||||||||||||||||    
T  77294 atttgtttacctgtgattttggcaaacag-gggctagtttggattattacaagcgggattgaactagaaatctcaagac-cgttgtgcaaaggtttt 77200  T

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Target: scaffold0567 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0567
Description:

Target: scaffold0567; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 735 - 777
Target Start/End: Complemental strand, 9183 - 9140
Alignment:
Q  735 ttgcttctgatcaatgttttcagcttaggag-aaacgaagaaaa 777  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||    
T  9183 ttgcttctgatcagtgttttcagcttaggagaaaacgaagaaaa 9140  T

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Target: scaffold0163 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 735 - 777
Target Start/End: Complemental strand, 25713 - 25670
Alignment:
Q  735 ttgcttctgatcaatgttttcagcttaggag-aaacgaagaaaa 777  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||    
T  25713 ttgcttctgatcagtgttttcagcttaggagaaaacgaagaaaa 25670  T

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Target: scaffold0088 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 488 - 546
Target Start/End: Complemental strand, 40542 - 40486
Alignment:
Q  488 tagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaagg 546  Q
    |||||| |||| |||||| ||||| |||||||||||||||  |||||||||||||||||    
T  40542 tagttcggattattacaatcgagatcgaactagaaatctc--aacatgttgtgcaaagg 40486  T

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Target: scaffold0479 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 736 - 777
Target Start/End: Complemental strand, 9250 - 9208
Alignment:
Q  736 tgcttctgatcaatgttttcagcttaggag-aaacgaagaaaa 777  Q
    |||||||||||| ||||||||||||||||| ||||||||||||    
T  9250 tgcttctgatcagtgttttcagcttaggagaaaacgaagaaaa 9208  T

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Target: scaffold0315 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0315
Description:

Target: scaffold0315; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 736 - 777
Target Start/End: Complemental strand, 7953 - 7911
Alignment:
Q  736 tgcttctgatcaatgttttcagcttaggag-aaacgaagaaaa 777  Q
    |||||||||||| ||||||||||||||||| ||||||||||||    
T  7953 tgcttctgatcagtgttttcagcttaggagaaaacgaagaaaa 7911  T

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Target: scaffold0026 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 735 - 768
Target Start/End: Complemental strand, 7164 - 7131
Alignment:
Q  735 ttgcttctgatcaatgttttcagcttaggagaaa 768  Q
    ||||||||||||| ||||||||||||||||||||    
T  7164 ttgcttctgatcagtgttttcagcttaggagaaa 7131  T

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