View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4793-Insertion-6 (Length: 845)
Name: NF4793-Insertion-6
Description: NF4793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4793-Insertion-6 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 7 - 358
Target Start/End: Original strand, 40424972 - 40425320
Alignment:
| Q |
7 |
actatatacgtgtgtactagtcatactaaaaatagtctcatgatccaatgacaatatccagagttaggattaggattaggaggatttctatattaaattg |
106 |
Q |
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| T |
40424972 |
actatatacgtgtgtactagtcatactaaaaatagtctcatgatccaatgacaatatccagagttaggattaggattaggaggatttctatattaaattg |
40425071 |
T |
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| Q |
107 |
caataggtatactcatgatccaatgacaattaatcgccaattttagtcaactaatccaatacaaaatcgattcattattaaatatagcatttcagatcgt |
206 |
Q |
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| T |
40425072 |
caataggtatactcatgatccaatgacaattaatcgccaattttagtcaactaatccaatacaaaatcgattcattgttaaatatagcatttcagatcgt |
40425171 |
T |
|
| Q |
207 |
ttatgattatgtagaagctatttaatcatttctatatttattcaaaaatattagattagaagcacagagttgatctcattcattgtgacgaattaattaa |
306 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
40425172 |
ttatgattatgtagaagctatttaatcatttatatatttattcaaaaatattagattagaagcacagagttgatgtcattcattg---cgaattaattaa |
40425268 |
T |
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| Q |
307 |
acgtgaatcataagtagttgaagatatgcatcgacacgagaatccaatacta |
358 |
Q |
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| T |
40425269 |
acgtgaatcataagtagttgaagatatgcatccacacgagtatccaatacta |
40425320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 29 - 358
Target Start/End: Original strand, 40440297 - 40440635
Alignment:
| Q |
29 |
atactaaaaatagtctcatgatccaatgacaatatccagagttaggattaggattaggaggatttctatattaaattgcaataggtata-------ctca |
121 |
Q |
| |
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| T |
40440297 |
atactaataataatctcatgatcgaatgaccatatctagagttaggattaggattaggaggtcccctatattaaattgcaataggtatataataatctca |
40440396 |
T |
|
| Q |
122 |
tgatccaatgacaatt-aatcgccaattttagtcaactaatccaatacaaaatcgattcattattaaa-tatagcatttcagatcgtttatgattatgta |
219 |
Q |
| |
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| T |
40440397 |
tgatccaatgacaatttaatcaccaaattcagtcaacttatcctaaaaaaaaattatttattgttaaaatacagcatatctgatcgtttatgattatgta |
40440496 |
T |
|
| Q |
220 |
gaagctatttaatcatttctata---tttattcaaaaatattagattagaagcacagagttgatctcattcattgtgacgaattaattaaacgtgaatca |
316 |
Q |
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| T |
40440497 |
gaagctacttaataatttatatactatttatctacaaaagt---attagaagcacagagttgatctcattcattgtgacgaattaattaaacgtgaatca |
40440593 |
T |
|
| Q |
317 |
taagtagttgaagatatgcatcgacacgagaatccaatacta |
358 |
Q |
| |
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| T |
40440594 |
taagtagttgaagatatgcatccacacgagaatccaatacta |
40440635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 704 - 845
Target Start/End: Original strand, 40441033 - 40441172
Alignment:
| Q |
704 |
gtcattactataggactatagtcatgactcattagcatgcacatcaacaaatgctgatgccttgaaactggttgttttggatcaaataagctgcctcaaa |
803 |
Q |
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| T |
40441033 |
gtcattactatag-actatagtcatgactcattagcatgcacatcaacaaatgttgatgccttgaaactggttgttttggatcaaataagctgcctcaaa |
40441131 |
T |
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| Q |
804 |
acctgatttatgctttcttacaagatcctttattgtcaagca |
845 |
Q |
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| T |
40441132 |
acctgatttatgc-ttcttacaagatcctttattgtcaagca |
40441172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 357 - 492
Target Start/End: Original strand, 40440679 - 40440814
Alignment:
| Q |
357 |
taagttttatatagaatggatccatcacaaaacgacaaaagaagcattataaaaataaatacaatcaacgttgttattcgatctccacaacgtgaaagag |
456 |
Q |
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|||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
40440679 |
taagttttatatagaacgaatccatcacaaaacgacaaaagaaacattataaaaataaatacaatcaacattgttattcaatctccacaacgtgaaagag |
40440778 |
T |
|
| Q |
457 |
ggatgaaacagatctatctgaatagtcaaattgtct |
492 |
Q |
| |
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||| |||||||||||||||||||||||||||||||| |
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| T |
40440779 |
ggacgaaacagatctatctgaatagtcaaattgtct |
40440814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 364 - 486
Target Start/End: Original strand, 40425383 - 40425503
Alignment:
| Q |
364 |
tatatagaatggatccatcacaaaacgacaaaagaagcattataaaaataaatacaatcaacgttgttattcgatctccacaacgtgaaagagggatgaa |
463 |
Q |
| |
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||||||||||||||||| |||||||||||||| ||| || |||||||||||||||| |||| |||| |||| |||| |||||||||||||||||||||| |
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| T |
40425383 |
tatatagaatggatccaccacaaaacgacaaaggaaacaatataaaaataaataca--caacattgtcattcaatcttcacaacgtgaaagagggatgaa |
40425480 |
T |
|
| Q |
464 |
acagatctatctgaatagtcaaa |
486 |
Q |
| |
|
||||||||||| ||||||||||| |
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| T |
40425481 |
acagatctatcagaatagtcaaa |
40425503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 579 - 645
Target Start/End: Original strand, 40440903 - 40440969
Alignment:
| Q |
579 |
caccttggcattatcatatgttgaactctgcactcaaatatatacctcaataatccaaatgatggac |
645 |
Q |
| |
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| T |
40440903 |
caccttggcattatcatatgttgaactctgcactcaaatatatacctcaataatccaaatgatggac |
40440969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 717 - 845
Target Start/End: Original strand, 40425733 - 40425864
Alignment:
| Q |
717 |
gactatagtcatgactcattagcatgca----catcaacaaatgctgatgccttgaaactggttg-ttttggatcaaataagctgcctcaaaacctgatt |
811 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||| ||| |||||||| |||||||||||||||||| | |
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| T |
40425733 |
gactatagtcatgactcattagcatgcacatgcatcaacaaattttgatgccttgaaa-tggttgctttaagatcaaatgagctgcctcaaaacctgact |
40425831 |
T |
|
| Q |
812 |
tatgctttcttacaagatcctttattgtcaagca |
845 |
Q |
| |
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||||| | |||| |||||||| ||||||||||| |
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| T |
40425832 |
tatgc-tccttatgagatccttcattgtcaagca |
40425864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 579 - 644
Target Start/End: Original strand, 40425592 - 40425657
Alignment:
| Q |
579 |
caccttggcattatcatatgttgaactctgcactcaaatatatacctcaataatccaaatgatgga |
644 |
Q |
| |
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||||| |||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||| |
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| T |
40425592 |
cacctaggcattatcatatgttgaactctgcactcagatatatacttcagtaatccaaatgatgga |
40425657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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