View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4793-Insertion-7 (Length: 814)
Name: NF4793-Insertion-7
Description: NF4793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4793-Insertion-7 |
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Alignment Details
Target: chr1 (Bit Score: 753; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 753; E-Value: 0
Query Start/End: Original strand, 8 - 812
Target Start/End: Complemental strand, 46686360 - 46685556
Alignment:
| Q |
8 |
gttggtatgtatttgcttcgtcaatattgtcatatagtcaatttttactttgaaagtacagtcaatcttttctttctaattgtgtcgatgtgttgaacaa |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46686360 |
gttggtatgtatttgcttcgtcaatattgtcatatagtcaatttttactttgaaagtacagtcaatcttttctttctaattgtgtcgatgtgttgaacaa |
46686261 |
T |
|
| Q |
108 |
atcaatcattgtaaacatacttttgtttttgtatatagcttgcacgtattaggcgctgtgtagggaggagctgtcaagactatgcgtctgagatgactag |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
46686260 |
atcaatcattgtaaacatacttttgtttttgtatatagcttgcacgtattaggcgctgtgtagggaggagctgtcaagactatgcgtctgagatgaccag |
46686161 |
T |
|
| Q |
208 |
tttgcaaaggaacaacaacgcttctacttcaaacatcagttcttgtacaacaaaatctgacaagaggaatgctttcaatgaaaagcctgtgcttcctaga |
307 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
46686160 |
tttgcaaaggaacaacaatgcttctacttcaaacatcagttcttgtacaacaaaatctgacaagaggaatgctttcaatgaaaagcccgtgcttcctaga |
46686061 |
T |
|
| Q |
308 |
aaacacactagtgatccacaaaggtgtattttgcaaggaaatggttcttgcttaaatcattacaatggcaaagaaaacgataatatgtcttctgaaagaa |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
46686060 |
aaacacactagtgatccacaaaggtgtattttgcaaggaaatggttcttgcttaaatcattacaacggcaaagaaaacgaaaatatgtcttctgaaagaa |
46685961 |
T |
|
| Q |
408 |
aaactgaatcgcagagctcctcttctttgcatctctctgcaaggcaagggcattgcctatcactggtcccttcacaaatggaaagacaattggggccatc |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46685960 |
aaactgaatcgcagagctcctcttctttgcatctctctgcaaggcaagggcattgcctatcactggtcccttcacaaatggaaagacaattggggccatc |
46685861 |
T |
|
| Q |
508 |
agagaatgaagttcaggctacaaaatatttcggtcggagtaccccgaaaaggacaatgaaagtggagttcaagaacataacgaatcaacagttaaatcaa |
607 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46685860 |
agagaatgaagttcaggctacaaaagatttcggtcggagtaccccaaaaaggacaatgaaagtggagttcaagaacataacgaatcaacagttaaatcaa |
46685761 |
T |
|
| Q |
608 |
aacatgagaaggacaacgatagcgttggggaaatgtccgattgatccatgttcttctggttcaaatcatgaaaaggaagaggaaaatgaagatttatgtc |
707 |
Q |
| |
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|||||||||||||||| ||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
46685760 |
aacatgagaaggacaatgatagcgctggggaaacgtccgattgatccatcttcttctggttcaaatcatgaaaaggaagaggaaaatgcagatttatgtc |
46685661 |
T |
|
| Q |
708 |
agagtatcccacaaaggaaaaggaaagtagtttttgattatcgattccactgcttgataatctttattccattattatatgttagtttttaactttcttc |
807 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46685660 |
agagtatcccacaaaggaaaaggaaagtagtttttgattgtcgattccactgcttgataatctttattccattattatatgttagtttttaactttcttc |
46685561 |
T |
|
| Q |
808 |
attaa |
812 |
Q |
| |
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||||| |
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| T |
46685560 |
attaa |
46685556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 658 - 811
Target Start/End: Complemental strand, 46703734 - 46703579
Alignment:
| Q |
658 |
ttcttctggttcaaatcatgaaaaggaagaggaaaatgaagatttatgtcagagtatcccacaaaggaaaaggaaagt--agtttttgattatcgattcc |
755 |
Q |
| |
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||||||||||||| | |||| |||||||||||||| | ||||| ||||||||||||| ||||||| |||||||| |||| ||||| ||||||||| |
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| T |
46703734 |
ttcttctggttcagaacatgtaaaggaagaggaaagagctgatttttgtcagagtatccgcaaaaggaagaggaaagtgtagttgttgatcatcgattcc |
46703635 |
T |
|
| Q |
756 |
actgcttgataatctttattccattattatatgttagtttttaactttcttcatta |
811 |
Q |
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||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
46703634 |
tctgctctataatccttattccattattatatgttagtttttaactttcttcatta |
46703579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 111 - 223
Target Start/End: Complemental strand, 46704263 - 46704151
Alignment:
| Q |
111 |
aatcattgtaaacatacttttgtttttgtatatagcttgcacgtattaggcgctgtgtagggaggagctgtcaagactatgcgtctgagatgactagttt |
210 |
Q |
| |
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||||||||| || |||||||||||||||| ||||||||||||||||||| |||||| || ||||||||||||| ||||| |||||||||||| ||| | |
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| T |
46704263 |
aatcattgtcaaaatacttttgtttttgtgtatagcttgcacgtattagacgctgtatacaaaggagctgtcaaggctatgagtctgagatgaccagtat |
46704164 |
T |
|
| Q |
211 |
gcaaaggaacaac |
223 |
Q |
| |
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||||||||||||| |
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| T |
46704163 |
gcaaaggaacaac |
46704151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 694 - 811
Target Start/End: Complemental strand, 46677148 - 46677023
Alignment:
| Q |
694 |
tgaagatttatgtcagagtatcccacaaaggaaaaggaaagt--agtttttgattatcgattccactgcttgataatctttattccatta------ttat |
785 |
Q |
| |
|
||||||||| |||||||||| ||| ||||||| |||||||| ||||||| |||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
46677148 |
tgaagatttctgtcagagtacccccaaaaggaagaggaaagtgtagttttttattatcgattccacagcttgataatctttattccattattattattat |
46677049 |
T |
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| Q |
786 |
atgttagtttttaactttcttcatta |
811 |
Q |
| |
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| ||||||||||||||||||||||| |
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| T |
46677048 |
accttagtttttaactttcttcatta |
46677023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 280
Target Start/End: Complemental strand, 46695690 - 46695583
Alignment:
| Q |
173 |
aggagctgtcaagactatgcgtctgagatgactagtttgcaaaggaacaacaacgcttctacttcaaacatcagttcttgtacaacaaaatctgacaaga |
272 |
Q |
| |
|
||||||||||||| ||||| |||||||| || | |||||||||||||||| | || |||||||||||| | ||| ||| || |||||||| | ||| |
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| T |
46695690 |
aggagctgtcaaggctatgagtctgagacaaccaatttgcaaaggaacaactctgtttatacttcaaacattaattcctgttcagcaaaatctaatgaga |
46695591 |
T |
|
| Q |
273 |
ggaatgct |
280 |
Q |
| |
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|||||||| |
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|
| T |
46695590 |
ggaatgct |
46695583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 694 - 810
Target Start/End: Complemental strand, 21728345 - 21728227
Alignment:
| Q |
694 |
tgaagatttatgtcagagtatcccacaaaggaaaaggaaa--gtagtttttgattatcgattccactgcttgataatctttattccattattatatgtta |
791 |
Q |
| |
|
||||||||||||||||| | ||| ||||||| || ||| |||||| |||||||| ||||| || ||| ||||||||||||||||||||| |||||| |
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| T |
21728345 |
tgaagatttatgtcagactgcccccaaaaggaagagaaaatggtagttattgattattgattcttcttctttataatctttattccattattacatgtta |
21728246 |
T |
|
| Q |
792 |
gtttttaactttcttcatt |
810 |
Q |
| |
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||||||||||||||||||| |
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|
| T |
21728245 |
gtttttaactttcttcatt |
21728227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 428 - 516
Target Start/End: Original strand, 21245144 - 21245232
Alignment:
| Q |
428 |
tcttctttgcatctctctgcaaggcaagggcattgcctatcactggtcccttcacaaatggaaagacaattggggccatcagagaatga |
516 |
Q |
| |
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|||||||||||||| ||| |||||||||| |||| |||||| | |||||||| || ||| |||| ||| ||| |||||| |||||||| |
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| T |
21245144 |
tcttctttgcatctttcttcaaggcaaggacattccctatcgcaggtccctttaccaatcgaaaaacatttgtcgccatctgagaatga |
21245232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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