View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4793-Insertion-8 (Length: 781)

Name: NF4793-Insertion-8
Description: NF4793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4793-Insertion-8
NF4793-Insertion-8
[»] chr6 (11 HSPs)
chr6 (382-641)||(21389021-21389282)
chr6 (383-633)||(7789678-7789933)
chr6 (383-474)||(33022340-33022431)
chr6 (575-643)||(7789864-7789933)
chr6 (576-643)||(33022363-33022431)
chr6 (576-646)||(33022162-33022233)
chr6 (575-644)||(21389021-21389091)
chr6 (385-459)||(21389209-21389282)
chr6 (382-459)||(33022164-33022241)
chr6 (393-464)||(7789678-7789748)
chr6 (383-472)||(28472535-28472624)
[»] chr8 (22 HSPs)
chr8 (381-645)||(2814242-2814509)
chr8 (377-645)||(41539765-41540035)
chr8 (382-644)||(14193324-14193588)
chr8 (382-644)||(397007-397269)
chr8 (382-474)||(37994880-37994972)
chr8 (575-644)||(2814438-2814508)
chr8 (576-647)||(41539767-41539839)
chr8 (575-645)||(397199-397270)
chr8 (381-459)||(14193512-14193589)
chr8 (381-459)||(37994707-37994785)
chr8 (576-645)||(44036813-44036883)
chr8 (576-644)||(37994903-37994972)
chr8 (576-644)||(37994708-37994777)
chr8 (382-451)||(41539966-41540034)
chr8 (79-163)||(44042552-44042637)
chr8 (381-450)||(397006-397074)
chr8 (382-451)||(2814243-2814311)
chr8 (382-459)||(44036814-44036891)
chr8 (579-630)||(14193337-14193389)
chr8 (76-150)||(4166524-4166598)
chr8 (77-117)||(11872887-11872927)
chr8 (579-628)||(25101746-25101796)
[»] chr7 (18 HSPs)
chr7 (381-645)||(40521015-40521281)
chr7 (381-645)||(7298634-7298901)
chr7 (411-641)||(46567960-46568193)
chr7 (458-644)||(16979492-16979681)
chr7 (473-644)||(28948891-28949069)
chr7 (475-634)||(47478371-47478528)
chr7 (575-644)||(7298635-7298705)
chr7 (579-644)||(40521214-40521280)
chr7 (382-459)||(28948993-28949069)
chr7 (382-474)||(19805586-19805678)
chr7 (382-453)||(40521016-40521086)
chr7 (381-459)||(16979605-16979682)
chr7 (576-645)||(19805609-19805679)
chr7 (385-454)||(46567960-46568028)
chr7 (382-450)||(7298833-7298900)
chr7 (579-644)||(19804797-19804863)
chr7 (579-614)||(46568156-46568191)
chr7 (381-459)||(19804796-19804874)
[»] chr1 (50 HSPs)
chr1 (382-634)||(23346419-23346674)
chr1 (381-644)||(50892962-50893226)
chr1 (381-644)||(41833873-41834139)
chr1 (380-644)||(48871247-48871503)
chr1 (412-644)||(42180571-42180806)
chr1 (436-653)||(4156883-4157103)
chr1 (382-645)||(28217529-28217783)
chr1 (371-617)||(39669084-39669333)
chr1 (411-645)||(7062036-7062261)
chr1 (383-492)||(50904992-50905103)
chr1 (380-474)||(26552164-26552258)
chr1 (575-644)||(48752588-48752657)
chr1 (381-474)||(10227711-10227804)
chr1 (575-646)||(23346417-23346489)
chr1 (579-645)||(10227910-10227977)
chr1 (575-644)||(48871431-48871501)
chr1 (576-644)||(10227712-10227781)
chr1 (576-640)||(19059378-19059443)
chr1 (379-459)||(4156889-4156968)
chr1 (579-645)||(28217717-28217784)
chr1 (575-644)||(50892963-50893033)
chr1 (382-459)||(10227899-10227976)
chr1 (386-459)||(19059378-19059451)
chr1 (576-644)||(26552187-26552256)
chr1 (382-454)||(48752586-48752657)
chr1 (577-643)||(39669254-39669321)
chr1 (382-459)||(28217530-28217606)
chr1 (380-453)||(42180569-42180641)
chr1 (382-459)||(48871247-48871323)
chr1 (382-459)||(50893150-50893226)
chr1 (575-643)||(50904992-50905063)
chr1 (391-459)||(23346608-23346675)
chr1 (76-152)||(46895959-46896035)
chr1 (575-614)||(7062038-7062077)
chr1 (575-644)||(41833874-41833944)
chr1 (382-459)||(7062184-7062260)
chr1 (575-643)||(50905106-50905175)
chr1 (381-453)||(41834069-41834140)
chr1 (391-474)||(19059550-19059633)
chr1 (384-459)||(26551992-26552067)
chr1 (576-642)||(26551992-26552059)
chr1 (579-626)||(42180770-42180817)
chr1 (383-454)||(50905104-50905175)
chr1 (78-127)||(38294061-38294110)
chr1 (579-634)||(19059576-19059632)
chr1 (76-119)||(19547052-19547095)
chr1 (76-158)||(26765974-26766057)
chr1 (76-106)||(26297779-26297809)
chr1 (77-119)||(34582714-34582756)
chr1 (413-459)||(39669087-39669133)
[»] chr4 (31 HSPs)
chr4 (382-645)||(18936675-18936941)
chr4 (382-645)||(37177623-37177890)
chr4 (645-781)||(40061947-40062083)
chr4 (382-641)||(11147014-11147285)
chr4 (17-201)||(40062260-40062461)
chr4 (241-325)||(40062136-40062220)
chr4 (378-474)||(3102712-3102808)
chr4 (382-474)||(40534135-40534227)
chr4 (382-467)||(18381488-18381573)
chr4 (576-646)||(11147012-11147083)
chr4 (576-645)||(40533962-40534032)
chr4 (576-644)||(3102735-3102804)
chr4 (576-644)||(40534158-40534227)
chr4 (579-645)||(5121005-5121072)
chr4 (576-645)||(3102539-3102609)
chr4 (381-459)||(9231579-9231657)
chr4 (382-459)||(40533963-40534040)
chr4 (576-643)||(13690216-13690284)
chr4 (575-646)||(18936871-18936943)
chr4 (382-453)||(5121000-5121071)
chr4 (579-645)||(18381507-18381574)
chr4 (575-645)||(37177820-37177891)
chr4 (382-459)||(3102540-3102617)
chr4 (576-644)||(9231580-9231649)
chr4 (383-459)||(13690216-13690292)
chr4 (382-459)||(18936676-18936752)
chr4 (402-474)||(9231752-9231824)
chr4 (583-625)||(9231782-9231825)
chr4 (160-194)||(40062202-40062236)
chr4 (418-459)||(11147212-11147253)
chr4 (344-381)||(40062075-40062112)
[»] chr5 (53 HSPs)
chr5 (382-644)||(5146504-5146767)
chr5 (385-644)||(35454451-35454710)
chr5 (381-645)||(6518202-6518467)
chr5 (382-645)||(13823149-13823412)
chr5 (381-564)||(33377725-33377913)
chr5 (382-532)||(228717-228867)
chr5 (481-634)||(19897235-19897391)
chr5 (380-497)||(40881790-40881905)
chr5 (382-493)||(8489123-8489234)
chr5 (402-527)||(40881940-40882063)
chr5 (411-634)||(27319489-27319702)
chr5 (381-473)||(19898927-19899019)
chr5 (384-474)||(8323880-8323970)
chr5 (575-641)||(35454644-35454710)
chr5 (575-644)||(14388514-14388583)
chr5 (577-645)||(14069860-14069928)
chr5 (382-474)||(26534670-26534762)
chr5 (377-459)||(8323702-8323784)
chr5 (576-645)||(26534693-26534763)
chr5 (575-644)||(33377842-33377912)
chr5 (385-474)||(42630879-42630968)
chr5 (382-474)||(791592-791684)
chr5 (575-645)||(5146697-5146768)
chr5 (576-642)||(8323903-8323970)
chr5 (380-474)||(130420-130514)
chr5 (584-644)||(6518203-6518264)
chr5 (576-644)||(26534506-26534575)
chr5 (378-459)||(35454447-35454527)
chr5 (575-645)||(8489122-8489193)
chr5 (379-454)||(14388512-14388586)
chr5 (576-645)||(130253-130323)
chr5 (575-644)||(13823342-13823412)
chr5 (575-644)||(19898948-19899018)
chr5 (500-564)||(228888-228955)
chr5 (576-644)||(791592-791661)
chr5 (382-459)||(5146504-5146580)
chr5 (576-644)||(8323707-8323776)
chr5 (382-459)||(26534506-26534583)
chr5 (575-644)||(40881792-40881860)
chr5 (577-644)||(228717-228785)
chr5 (584-634)||(228987-229037)
chr5 (379-453)||(19897222-19897295)
chr5 (579-644)||(42630711-42630777)
chr5 (382-459)||(130254-130331)
chr5 (576-644)||(130443-130512)
chr5 (382-459)||(42630711-42630788)
chr5 (382-450)||(14069861-14069928)
chr5 (576-641)||(42630902-42630968)
chr5 (588-644)||(791810-791867)
chr5 (382-450)||(13823150-13823217)
chr5 (577-627)||(40882015-40882066)
chr5 (378-439)||(791810-791871)
chr5 (382-459)||(6518390-6518466)
[»] chr3 (25 HSPs)
chr3 (381-641)||(36635241-36635503)
chr3 (382-564)||(19580389-19580574)
chr3 (381-493)||(11650999-11651111)
chr3 (380-474)||(27073080-27073174)
chr3 (377-474)||(33214438-33214535)
chr3 (576-647)||(33214440-33214512)
chr3 (382-474)||(36274120-36274211)
chr3 (575-644)||(36635432-36635502)
chr3 (576-644)||(27073103-27073172)
chr3 (575-645)||(19580504-19580575)
chr3 (576-645)||(33214634-33214704)
chr3 (576-642)||(10598810-10598877)
chr3 (584-646)||(27072911-27072974)
chr3 (380-459)||(33219070-33219149)
chr3 (582-644)||(33219072-33219135)
chr3 (576-634)||(36274129-36274188)
chr3 (382-459)||(33214626-33214703)
chr3 (384-459)||(10598810-10598885)
chr3 (576-645)||(36274320-36274390)
chr3 (583-644)||(10599000-10599062)
chr3 (382-459)||(36274312-36274389)
chr3 (385-450)||(36635241-36635305)
chr3 (582-644)||(11651000-11651063)
chr3 (382-444)||(10599000-10599062)
chr3 (382-443)||(27072913-27072974)
[»] chr2 (39 HSPs)
chr2 (382-644)||(38085967-38086231)
chr2 (380-644)||(31470585-31470841)
chr2 (382-643)||(3671822-3672087)
chr2 (382-464)||(15332844-15332926)
chr2 (461-537)||(15330509-15330586)
chr2 (381-474)||(42028577-42028670)
chr2 (575-644)||(31470587-31470656)
chr2 (576-644)||(42028578-42028647)
chr2 (382-474)||(13280007-13280099)
chr2 (575-645)||(15332856-15332927)
chr2 (576-645)||(36059282-36059352)
chr2 (377-474)||(16115041-16115138)
chr2 (382-474)||(7317807-7317899)
chr2 (382-474)||(31860257-31860349)
chr2 (576-645)||(13280030-13280100)
chr2 (575-644)||(31860079-31860149)
chr2 (382-451)||(36059282-36059351)
chr2 (576-644)||(42028773-42028842)
chr2 (382-474)||(2059656-2059748)
chr2 (588-644)||(15330449-15330505)
chr2 (579-645)||(7317833-7317900)
chr2 (579-645)||(31860283-31860350)
chr2 (380-459)||(42028765-42028844)
chr2 (584-644)||(13279840-13279901)
chr2 (382-459)||(31860079-31860156)
chr2 (576-647)||(2059679-2059751)
chr2 (383-459)||(3671822-3671897)
chr2 (579-644)||(16115242-16115308)
chr2 (576-644)||(16115046-16115115)
chr2 (382-459)||(16115231-16115308)
chr2 (382-451)||(38085967-38086035)
chr2 (576-634)||(7317645-7317704)
chr2 (579-644)||(2059490-2059556)
chr2 (575-644)||(38086161-38086231)
chr2 (382-459)||(2059490-2059567)
chr2 (382-439)||(15330449-15330505)
chr2 (380-443)||(13279838-13279901)
chr2 (382-459)||(7317635-7317712)
chr2 (382-459)||(31470765-31470841)
[»] scaffold0140 (2 HSPs)
scaffold0140 (453-646)||(15845-16044)
scaffold0140 (382-464)||(15847-15929)
[»] scaffold0214 (4 HSPs)
scaffold0214 (380-474)||(11624-11718)
scaffold0214 (576-644)||(11822-11891)
scaffold0214 (381-459)||(11814-11892)
scaffold0214 (579-640)||(11630-11692)
[»] scaffold0135 (4 HSPs)
scaffold0135 (381-459)||(37445-37523)
scaffold0135 (576-644)||(37446-37515)
scaffold0135 (402-474)||(37618-37690)
scaffold0135 (583-625)||(37648-37691)
[»] scaffold0204 (2 HSPs)
scaffold0204 (584-633)||(17556-17605)
scaffold0204 (584-645)||(17469-17530)


Alignment Details
Target: chr6 (Bit Score: 174; Significance: 3e-93; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 382 - 641
Target Start/End: Original strand, 21389021 - 21389282
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataattaggaaata 481  Q
    ||||||||||| ||||||| |||||||| |||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  21389021 gagaaattcttctgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgatacgtcattgttttattttaaaataattaggaaata 21389120  T
Q  482 atttaagaaatgaaaactaactgctcctcctctctctcaaccattatttgcagt---tattcaccaccagcaatcatggttaaaaggnnnnnnnnntgac 578  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||||||||   |||||||||||| ||||||||||||||| |         ||||    
T  21389121 atttaagaaatgaaaaataaatgctcctcctctctctcaaccattatttgcagttagtattcaccaccaccaatcatggttaaaa-gaaaaaaaaatgac 21389219  T
Q  579 gtgtcatgttttaatttgttgtttgtaagaatgatagttaggttcgttcctacacatgaattt 641  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  21389220 gtgtcatgttttaatttgttgtttgtaagaatgatagttaggttcgttcctacacaagaattt 21389282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 383 - 633
Target Start/End: Complemental strand, 7789933 - 7789678
Alignment:
Q  383 agaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataattaggaaataa 482  Q
    ||||||||||||||||||  ||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||| ||  ||||||||||||||||||    
T  7789933 agaaattcttgtgtaggaatgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgtttttttaaaaaataattaggaaataa 7789834  T
Q  483 tttaagaaatgaaaactaactgctcctcctctctctcaaccattatttgcagt---tattcaccaccagcaatcatggttaaaag--gnnnnnnnnntga 577  Q
    |||||||||| |||| ||| |||||||||||||||||||||||||||||||||   |||||||||||| ||||||||||||||||            |||    
T  7789833 tttaagaaataaaaaataattgctcctcctctctctcaaccattatttgcagttagtattcaccaccaccaatcatggttaaaagaaaaaaaaacaatga 7789734  T
Q  578 cgtgtcatgttttaatttgttgtttgtaagaatgatagttaggttcgttcctacac 633  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7789733 catgtcatgttttaatttgttgtttgtaagaatgatagttaggttcgttcctacac 7789678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 383 - 474
Target Start/End: Complemental strand, 33022431 - 33022340
Alignment:
Q  383 agaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataatta 474  Q
    |||||||||||||||||| |||||||| |||||| | ||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||    
T  33022431 agaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta 33022340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 575 - 643
Target Start/End: Original strand, 7789864 - 7789933
Alignment:
Q  575 tgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttct 643  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||    
T  7789864 tgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcattcctacacaagaatttct 7789933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 576 - 643
Target Start/End: Original strand, 33022363 - 33022431
Alignment:
Q  576 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttct 643  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||    
T  33022363 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttct 33022431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 576 - 646
Target Start/End: Complemental strand, 33022233 - 33022162
Alignment:
Q  576 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctcta 646  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||  ||||||||||    
T  33022233 gacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaataatttctcta 33022162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 575 - 644
Target Start/End: Complemental strand, 21389091 - 21389021
Alignment:
Q  575 tgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctc 644  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||    
T  21389091 tgacgtatcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacagaagaatttctc 21389021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 385 - 459
Target Start/End: Complemental strand, 21389282 - 21389209
Alignment:
Q  385 aaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgtttt 459  Q
    |||||||||||||||| |||||||| | |||| ||||||||||||| ||||||||||||||||||||||| ||||    
T  21389282 aaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcattttttt 21389209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 382 - 459
Target Start/End: Original strand, 33022164 - 33022241
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgtttt 459  Q
    |||||||| |||||||||| |||||||| | |||| | ||||||||||| |||||||||||||||||||| |||||||    
T  33022164 gagaaattattgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 33022241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 393 - 464
Target Start/End: Original strand, 7789678 - 7789748
Alignment:
Q  393 gtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttatttt 464  Q
    |||||||| |||||||| | |||| ||||||||||||| |||||||||||||||| ||||||||||| ||||    
T  7789678 gtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacatgtcattgttttttttt 7789748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 383 - 472
Target Start/End: Complemental strand, 28472624 - 28472535
Alignment:
Q  383 agaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataat 472  Q
    ||||||| || ||||||| ||||||||  ||||| || ||| |||||| |||||||| ||| |||||| ||| |||| ||||||||||||    
T  28472624 agaaatttttatgtaggaacgaacctaatatatcatttttataaacaacaaattaaatcataacacgttatttttttcttttaaaataat 28472535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 171; Significance: 2e-91; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 381 - 645
Target Start/End: Complemental strand, 2814509 - 2814242
Alignment:
Q  381 tgagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataattaggaaat 480  Q
    |||||||||||||||||||| |||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  2814509 tgagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgttttttttaaaaataattaggaaat 2814410  T
Q  481 aatttaagaaatgaaaactaactgctcctcctctctctcaaccattatttgcagt---tattcaccaccagcaatcatggttaaaaggnnnnnnnnntga 577  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||   |||||||||||| ||||||||||||||||           ||    
T  2814409 aatttaagaaatgaaaaataattgctcctcctctctctcaaccattatttgcggttagtattcaccaccaccaatcatggttaaaagaaaaaaaaaacga 2814310  T
Q  578 cgtgtcatgttttaatttgttgtttgtaagaatgatagttaggttcgttcctacacatgaatttctct 645  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2814309 cgtgtcatgatttaatttgttgtttgtaagaatgatagttaggttcgttcctacacaagaatttctct 2814242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 377 - 645
Target Start/End: Original strand, 41539765 - 41540035
Alignment:
Q  377 tttttgagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataattagg 476  Q
    |||| ||||||||||||||||||| |||||||| |||||| ||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||  |    
T  41539765 ttttagagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaatatgacacgtcgttgttttattttaaaataattttg 41539864  T
Q  477 aaataatttaagaaatgaaaactaactgctcctcctctctctcaaccattatttgcagt---tattcaccaccagcaatcatggttaaaaggnnnnnnnn 573  Q
    ||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||   |||||||||||| |||||||| |||||| |            
T  41539865 aaataatttaagaaatgaaaaataactgttccttctctctctcaaccattatttgcagttagtattcaccaccaccaatcatgattaaaa-gaaaataaa 41539963  T
Q  574 ntgacgtgtcatgttttaatttgttgtttgtaagaatgatagttaggttcgttcctacacatgaatttctct 645  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  41539964 acgacgtgtcatgttttaatttgttgtttgtaagaatgatagttaggttcgttcctacacaagaatttctct 41540035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 157; E-Value: 5e-83
Query Start/End: Original strand, 382 - 644
Target Start/End: Original strand, 14193324 - 14193588
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataattaggaaata 481  Q
    |||||||| |||| ||||| |||||||| |||||  || |||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  14193324 gagaaatttttgt-taggaacgaacctaacatattatttttacaaacaacaaattaaaacatgacacatcattgttttattttaaaataatttggaaata 14193422  T
Q  482 atttaagaaatgaaaactaactgctcctcctctctctcaaccattatttgcagt---tattcaccaccagcaatcatggttaaaaggnnnnnnnnntgac 578  Q
    |||||||||||||||| ||| || ||||||||||||||||||||||||||||||   |||||||||||| ||||||||||||||||          ||||    
T  14193423 atttaagaaatgaaaaataattgttcctcctctctctcaaccattatttgcagttagtattcaccaccaccaatcatggttaaaagaagaaaaaaatgac 14193522  T
Q  579 gtgtcatgttttaatttgttgtttgtaagaatgatagttaggttcgttcctacacatgaatttctc 644  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  14193523 gtgtcatgttttaatttgttgtttgtaagaatgatagttaggttcgttcctacacaagaatttctc 14193588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 382 - 644
Target Start/End: Complemental strand, 397269 - 397007
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataattaggaaata 481  Q
    ||||||||||||||||| | |||||||| |||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  397269 gagaaattcttgtgtagaaacgaacctaacatatcattcttataaacaacaaattaaaacatgacacgtcattgttttattttaaaataattaggaaata 397170  T
Q  482 atttaagaaatgaaaactaactgctcctcctctctctcaaccattatttgcagt---tattcaccaccagcaatcatggttaaaaggnnnnnnnnntgac 578  Q
    |||||||||||||||| |||||||||||||||  ||||||||||||||||| ||   |||||||||||| ||||||||||||||| |           ||    
T  397169 atttaagaaatgaaaaataactgctcctcctc--tctcaaccattatttgcggttagtattcaccaccaccaatcatggttaaaa-gaaaaaaaaacaac 397073  T
Q  579 gtgtcatgttttaatttgttgtttgtaagaatgatagttaggttcgttcctacacatgaatttctc 644  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||    
T  397072 gtgttatgttttaatttattgtttgtaagaatgatagttaggttcgttcctgcacaagaatttctc 397007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 382 - 474
Target Start/End: Complemental strand, 37994972 - 37994880
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataatta 474  Q
    ||||||||||||||||||| |||||||| | |||| | |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  37994972 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaataaattaaaacatgacacgtcgttgttttcttttaaaataatta 37994880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 575 - 644
Target Start/End: Original strand, 2814438 - 2814508
Alignment:
Q  575 tgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctc 644  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  2814438 tgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 2814508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 576 - 647
Target Start/End: Complemental strand, 41539839 - 41539767
Alignment:
Q  576 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctctaa 647  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  41539839 gacgtgtcatattttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctctaa 41539767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 575 - 645
Target Start/End: Original strand, 397199 - 397270
Alignment:
Q  575 tgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctct 645  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||| ||||||||||    
T  397199 tgacgtgtcatgttttaatttgttgtttataagaatgatatgttaggttcgtttctacacaagaatttctct 397270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 381 - 459
Target Start/End: Complemental strand, 14193589 - 14193512
Alignment:
Q  381 tgagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgtttt 459  Q
    |||||||||||||||||||| |||||||| | |||| ||||||||||||| ||||||||||||||||||||||| ||||    
T  14193589 tgagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcattttttt 14193512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 381 - 459
Target Start/End: Original strand, 37994707 - 37994785
Alignment:
Q  381 tgagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgtttt 459  Q
    |||||||||||||||||||| |||||||| | |||| | |||||||||||||||||||||||||| ||||| |||||||    
T  37994707 tgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaataaattaaaacatgatacgtcgttgtttt 37994785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 576 - 645
Target Start/End: Complemental strand, 44036883 - 44036813
Alignment:
Q  576 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctct 645  Q
    |||||||||||||| ||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||    
T  44036883 gacgtgtcatgtttgaatttgttgtttgtaaggatgataggttaggttcgtccctacacatgaatttctct 44036813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 576 - 644
Target Start/End: Original strand, 37994903 - 37994972
Alignment:
Q  576 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctc 644  Q
    |||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||| |||||||||    
T  37994903 gacgtgtcatgttttaatttattgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 37994972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 576 - 644
Target Start/End: Complemental strand, 37994777 - 37994708
Alignment:
Q  576 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctc 644  Q
    ||||| |||||||||||||| ||||||||||| |||||| |||||||||||||||||||| |||||||||    
T  37994777 gacgtatcatgttttaatttattgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 37994708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 382 - 451
Target Start/End: Complemental strand, 41540034 - 41539966
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtc 451  Q
    ||||||||||||||||||| |||||||| | |||| ||||||||||||| ||||||||||||||||||||    
T  41540034 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtc 41539966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 79 - 163
Target Start/End: Complemental strand, 44042637 - 44042552
Alignment:
Q  79 tttagatagtaagtttttatagaaacttatccattcaatgctttggaaaatgaactatcgaactttttcaat-aatagtttcttaa 163  Q
    |||| |||||||||||||||||||| || | |||||||||| ||||||| |||| ||| ||||||||||||| |||||||||||||    
T  44042637 tttaaatagtaagtttttatagaaatttgtgcattcaatgcattggaaattgaagtattgaactttttcaatgaatagtttcttaa 44042552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 381 - 450
Target Start/End: Original strand, 397006 - 397074
Alignment:
Q  381 tgagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgt 450  Q
    ||||||||||||||| |||| |||||||| | |||| |||||||||||||||||||||||||| ||||||    
T  397006 tgagaaattcttgtgcaggaacgaacctaac-tatcattcttacaaacaataaattaaaacataacacgt 397074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 382 - 451
Target Start/End: Original strand, 2814243 - 2814311
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtc 451  Q
    ||||||||||||||||||| |||||||| | |||| ||||||||||||| |||||||| |||||||||||    
T  2814243 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaatcatgacacgtc 2814311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 382 - 459
Target Start/End: Original strand, 44036814 - 44036891
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgtttt 459  Q
    ||||||||| ||||||||  |||||||| | |||| | ||||||||||| ||||| |||||||||||||| |||||||    
T  44036814 gagaaattcatgtgtagggacgaacctaacctatcatccttacaaacaacaaattcaaacatgacacgtcgttgtttt 44036891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 579 - 630
Target Start/End: Complemental strand, 14193389 - 14193337
Alignment:
Q  579 gtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttccta 630  Q
    |||||||||||||||||||||||||||| ||| ||| ||||||||||||||||    
T  14193389 gtgtcatgttttaatttgttgtttgtaaaaataatatgttaggttcgttccta 14193337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 150
Target Start/End: Complemental strand, 4166598 - 4166524
Alignment:
Q  76 gactttagatagtaagtttttatagaaacttatccattcaatgctttggaaaatgaactatcgaactttttcaat 150  Q
    |||||||||||  |||||||||| ||||||| | |||||||||  ||||||| |||| ||| |||||||||||||    
T  4166598 gactttagatataaagtttttatggaaacttgtgcattcaatgtattggaaattgaaatattgaactttttcaat 4166524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 117
Target Start/End: Complemental strand, 11872927 - 11872887
Alignment:
Q  77 actttagatagtaagtttttatagaaacttatccattcaat 117  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  11872927 actttagatagtaagtttttataaaaacttatacattcaat 11872887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 579 - 628
Target Start/End: Complemental strand, 25101796 - 25101746
Alignment:
Q  579 gtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcc 628  Q
    ||||||| ||||| ||||||||||| |||||||||| ||||||||||||||    
T  25101796 gtgtcatattttattttgttgtttgcaagaatgataggttaggttcgttcc 25101746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 171; Significance: 2e-91; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 381 - 645
Target Start/End: Complemental strand, 40521281 - 40521015
Alignment:
Q  381 tgagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataattaggaaat 480  Q
    |||||||||||||||||||| |||||||| |||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  40521281 tgagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacatcattgttttattttaaaataattaggaaat 40521182  T
Q  481 aatttaagaaatgaaaactaactgctcctcctctctctcaaccattatttgcagt---tattcaccaccagcaatcatggttaaaaggnnnnnnnnntga 577  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||   |||||||||| | ||||||||||||||||          |||    
T  40521181 aatttaataaatgaaaa-taactgctcctcctctctctcaaccattatttgcggttagtattcaccactaccaatcatggttaaaagaaaaaaattatga 40521083  T
Q  578 cgtgtcatgttttaatttgttgtttgtaagaatgatagttaggttcgttcctacacatgaatttctct 645  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  40521082 cgtgtcatattttaatttgttgtttgtaagaatgatagttaggttcgttcctacacaagaatttctct 40521015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 381 - 645
Target Start/End: Original strand, 7298634 - 7298901
Alignment:
Q  381 tgagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataattaggaaat 480  Q
    |||||||||||||||||||| |||||||| |||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7298634 tgagaaattcttgtgtaggaacgaacctaacatatcatttttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataattagaaaat 7298733  T
Q  481 aatttaagaaatgaaaactaactgctcctcctctctctcaaccattatttgcagt---tattcaccaccagcaatcatggttaaaaggnnnnnnnnntga 577  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||||||||| |   |||||||||||| ||||||||||||||||            |    
T  7298734 aatttaagaaatgaaaaataactgctcctcctctttctcaaccattatttgcacttagtattcaccaccaccaatcatggttaaaagaaaaaaaaaaata 7298833  T
Q  578 cgtgtcatgttttaatttgttgtttgtaagaatgatagttaggttcgttcctacacatgaatttctct 645  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  7298834 cgtgttatgttttaatttgttgtttgtaagaatgatagttaggttcgttcctacacaagaatttctct 7298901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 411 - 641
Target Start/End: Complemental strand, 46568193 - 46567960
Alignment:
Q  411 catatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataattaggaaataatttaagaaatgaaaactaactgctcctc 510  Q
    |||||| ||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||    
T  46568193 catatcattcttacaaacaacaaattaaaacatgacacatcattgttttatttaaaaataattaggaaataatttaataaatgaaaaataactgctcctc 46568094  T
Q  511 ctctctctcaaccattatttgcagt---tattcaccaccagcaatcatggttaaaaggnnnnnnnnntgacgtgtcatgttttaatttgttgtttgtaag 607  Q
    |||||||||||||||||| ||||||   ||||||| |||| ||||||| ||||||||          |||||||||||||||||||||||||||||||||    
T  46568093 ctctctctcaaccattatctgcagttagtattcactaccaccaatcatagttaaaagaaaaataaaatgacgtgtcatgttttaatttgttgtttgtaag 46567994  T
Q  608 aatgatagttaggttcgttcctacacatgaattt 641  Q
    ||||||||||| ||||||||||||||| ||||||    
T  46567993 aatgatagttaagttcgttcctacacaagaattt 46567960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 458 - 644
Target Start/End: Original strand, 16979492 - 16979681
Alignment:
Q  458 ttattttaaaataattaggaaataatttaagaaatgaaaactaactgctcctcctctctctcaaccattatttgcagt---tattcaccaccagcaatca 554  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||   |||||||||||| |||| |    
T  16979492 ttattttaaaataatttggaaataatttaagaaatgaaaaataactgctcctcctctctctcaaccattatctgcagttagtattcaccaccaccaatta 16979591  T
Q  555 tggttaaaaggnnnnnnnnntgacgtgtcatgttttaatttgttgtttgtaagaatgatagttaggttcgttcctacacatgaatttctc 644  Q
    ||||||||||          |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||    
T  16979592 tggttaaaagaaaaaaaaaatgacgtgtcatgttttaatttgttatttgtaagaatgatagttagattcgttcctacacaagaatttctc 16979681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 473 - 644
Target Start/End: Original strand, 28948891 - 28949069
Alignment:
Q  473 taggaaataatttaagaaatgaaaactaactgctcctcctctctctc--aaccattatttgcagt---tattcaccaccagcaatcatggttaaaag--g 565  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||| ||   |||||||||||| ||||||||||||||||       
T  28948891 taggaaataatttaagaaatgaaaaataactgctcctcctctctctctgaaccattatttgcggttagtattcaccaccaccaatcatggttaaaagaaa 28948990  T
Q  566 nnnnnnnnntgacgtgtcatgttttaatttgttgtttgtaagaatgatagttaggttcgttcctacacatgaatttctc 644  Q
             ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||    
T  28948991 gaaaaaaaatgacgtgtcatgttttaatttattgtttgtaagaatgatagttaggttcgttcctacacaaaaatttctc 28949069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 475 - 634
Target Start/End: Complemental strand, 47478528 - 47478371
Alignment:
Q  475 ggaaataatttaagaaatgaaaactaactgctcctcctctctctcaaccattatttgcagt---tattcaccaccagcaatcatggttaaaaggnnnnnn 571  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||   |||||||||||| ||||||||||||||||           
T  47478528 ggaaataatttaagaaatgaaaaataattgctcctcctctctctcaaccattatttgcagttagtattcaccaccatcaatcatggttaaaag--aaaaa 47478431  T
Q  572 nnntgacgtgtcatgttttaatttgttgtttgtaagaatgatagttaggttcgttcctacaca 634  Q
       ||| ||||||||   ||||||||||||||||||||||||||||| ||||||| |||||||    
T  47478430 aaatgatgtgtcatg---taatttgttgtttgtaagaatgatagttaagttcgtttctacaca 47478371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 575 - 644
Target Start/End: Complemental strand, 7298705 - 7298635
Alignment:
Q  575 tgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctc 644  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||    
T  7298705 tgacgtgtcatgttttaatttgttgtttgtaaaaatgatatgttaggttcgttcctacacaagaatttctc 7298635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 579 - 644
Target Start/End: Original strand, 40521214 - 40521280
Alignment:
Q  579 gtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctc 644  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  40521214 gtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 40521280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 382 - 459
Target Start/End: Complemental strand, 28949069 - 28948993
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgtttt 459  Q
    |||||||| |||||||||| |||||||| | |||| ||||||||||||||||||||||||||||||||||||| ||||    
T  28949069 gagaaatttttgtgtaggaacgaacctaac-tatcattcttacaaacaataaattaaaacatgacacgtcattttttt 28948993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 382 - 474
Target Start/End: Complemental strand, 19805678 - 19805586
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataatta 474  Q
    ||||||||||||||||||| ||||| || | |||| | |||| ||| || |||||||||||||||||||| ||| ||| ||||||||||||||    
T  19805678 gagaaattcttgtgtaggaacgaacttaacctatcatccttataaataacaaattaaaacatgacacgtcgttgctttcttttaaaataatta 19805586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 382 - 453
Target Start/End: Original strand, 40521016 - 40521086
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcat 453  Q
    ||||||||||||||||||| |||||||| | |||| ||||||||||||| ||||||||| ||||||||||||    
T  40521016 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaatatgacacgtcat 40521086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 381 - 459
Target Start/End: Complemental strand, 16979682 - 16979605
Alignment:
Q  381 tgagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgtttt 459  Q
    |||||||||||||||||||| |||| ||| | |||| |||||||||| || ||||||||||||||||||||||| ||||    
T  16979682 tgagaaattcttgtgtaggaacgaatctaac-tatcattcttacaaataacaaattaaaacatgacacgtcattttttt 16979605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 576 - 645
Target Start/End: Original strand, 19805609 - 19805679
Alignment:
Q  576 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctct 645  Q
    ||||||||||||||||||||||| ||| |||| |||||| |||| ||||||||||||||| ||||||||||    
T  19805609 gacgtgtcatgttttaatttgttatttataaggatgataggttaagttcgttcctacacaagaatttctct 19805679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 385 - 454
Target Start/End: Original strand, 46567960 - 46568028
Alignment:
Q  385 aaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcatt 454  Q
    |||||||||||||||| ||||| || | |||| ||||||||||||| |||||||||||||||||||||||    
T  46567960 aaattcttgtgtaggaacgaacttaac-tatcattcttacaaacaacaaattaaaacatgacacgtcatt 46568028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 382 - 450
Target Start/End: Complemental strand, 7298900 - 7298833
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgt 450  Q
    ||||||||||||||||||| |||||||| | |||| ||||||||||||| |||||||||||| ||||||    
T  7298900 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacataacacgt 7298833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 579 - 644
Target Start/End: Complemental strand, 19804863 - 19804797
Alignment:
Q  579 gtgtcatgttttaatttgttgtttgtaagaatgatag-ttaggttcgttcctacacatgaatttctc 644  Q
    ||||| ||||| ||||||||||||||||| || |||| ||||||||||||||||||| |||||||||    
T  19804863 gtgtcgtgtttcaatttgttgtttgtaaggataataggttaggttcgttcctacacaagaatttctc 19804797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 579 - 614
Target Start/End: Original strand, 46568156 - 46568191
Alignment:
Q  579 gtgtcatgttttaatttgttgtttgtaagaatgata 614  Q
    ||||||||||||||||||||||||||||||||||||    
T  46568156 gtgtcatgttttaatttgttgtttgtaagaatgata 46568191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 381 - 459
Target Start/End: Original strand, 19804796 - 19804874
Alignment:
Q  381 tgagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgtttt 459  Q
    |||||||||||||||||||| |||||||| | |||  | ||||||||||| ||||| ||||| ||||| || |||||||    
T  19804796 tgagaaattcttgtgtaggaacgaacctaacctattatccttacaaacaacaaattgaaacacgacacatcgttgtttt 19804874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 171; Significance: 2e-91; HSPs: 50)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 382 - 634
Target Start/End: Original strand, 23346419 - 23346674
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataattaggaaata 481  Q
    ||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  23346419 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaataaattaaaacatgacacgtcatttttttattttaaaataatttggaaata 23346518  T
Q  482 atttaagaaatgaaaactaactgctcctcctctctctcaaccattatttgcagt---tattcaccaccagcaatcatggttaaaaggnnnnnnnnntgac 578  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||||   |||||||||||| ||||||||||||||||          ||||    
T  23346519 atttaagaaatgaaaaataactgctactcctctctctcaaccattatttgcagttagtattcaccaccaccaatcatggttaaaagaaaaaaaaaatgac 23346618  T
Q  579 gtgtcatgttttaatttgttgtttgtaagaatgatagttaggttcgttcctacaca 634  Q
     |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23346619 atgtcatgttttaatttattgtttgtaagaatgatagttaggttcgttcctacaca 23346674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 381 - 644
Target Start/End: Original strand, 50892962 - 50893226
Alignment:
Q  381 tgagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataattaggaaat 480  Q
    ||||||||| |||||||| | ||||| || |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  50892962 tgagaaatttttgtgtagcaacgaacttaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataattaggaaat 50893061  T
Q  481 aatttaagaaatgaaaactaactgctcctcctctctctcaaccattatttgcagt---tattcaccaccagcaatcatggttaaaaggnnnnnnnnntga 577  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||   |||||||||||| ||||||||||||||||          |||    
T  50893062 aatttaagaaatgaaaaataactgcttctcctctctctcaaccattatttgcggttagtattcaccaccatcaatcatggttaaaag--aaaaaaaatga 50893159  T
Q  578 cgtgtcatgttttaatttgttgtttgtaagaatgatagttaggttcgttcctacacatgaatttctc 644  Q
     |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  50893160 tgtgtcatgttttaatttgttgtttgtaataatgatagttaggttcgttcctacacaagaatttctc 50893226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 381 - 644
Target Start/End: Original strand, 41833873 - 41834139
Alignment:
Q  381 tgagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataattaggaaat 480  Q
    |||||||||||||| ||| | |||| |||  ||||| |||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  41833873 tgagaaattcttgtatagaaacgaatctaatatatcattcttacacacaacaaattaaaacatgacacgtcattattttattttaaaataattaggaaat 41833972  T
Q  481 aatttaagaaatgaaaactaactgctcctcctctctctcaaccattatttgcagt---tattcaccaccagcaatcatggttaaaaggnnnnnnnnntga 577  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||   |||||||||  | |||||||||||||||           |||    
T  41833973 aatttaagaaatgaaaaataactgctcctcctctctctcaaccattatttgcagtcagtattcaccattatcaatcatggttaaaaaaaaaaaaatatga 41834072  T
Q  578 cgtgtcatgttttaatttgttgtttgtaagaatgatagttaggttcgttcctacacatgaatttctc 644  Q
    ||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||| |||||||||    
T  41834073 cgtgtcatgttttaatttgttgtttgtaataatgctagttatgttcgttcctacacaagaatttctc 41834139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 380 - 644
Target Start/End: Complemental strand, 48871503 - 48871247
Alignment:
Q  380 ttgagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataattaggaaa 479  Q
    ||||||||||||||||||||| |||||||| |||||| ||||||||||||| ||||||||||||  ||||||||||||||||||||||||              
T  48871503 ttgagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacattgcacgtcattgttttattttaaaat---------- 48871414  T
Q  480 taatttaagaaatgaaaactaactgctcctcctctctctcaaccattatttgcagt---tattcaccaccagcaatcatggttaaaaggnnnnnnnnntg 576  Q
     ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||   |||||||||||| ||||||||||||||||          ||    
T  48871413 -aatttaagaaatgaaaaataactgctcctcctctctctcaactattatttgcagttaatattcaccaccaccaatcatggttaaaagaaaaaaaaaatg 48871315  T
Q  577 acgtgtcatgttttaatttgttgtttgtaagaatgatagttaggttcgttcctacacatgaatttctc 644  Q
    | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  48871314 atgtgtcatgttttaatttgttatttgtaagaatgatagttaggttcgttcctacacaagaatttctc 48871247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 412 - 644
Target Start/End: Complemental strand, 42180806 - 42180571
Alignment:
Q  412 atatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataattaggaaataatttaagaaatgaaaactaactgctcctcc 511  Q
    ||||| ||||||||||||| ||| ||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  42180806 atatcattcttacaaacaacaaactaaaacatgacacatcattattttattttaaaataattagaaaataatttaagaaatgaaaaataactgctcctcc 42180707  T
Q  512 tctctctcaaccattatttgcagt---tattcaccaccagcaatcatggttaaaaggnnnnnnnnntgacgtgtcatgttttaatttgttgtttgtaaga 608  Q
    | ||||||||||||||||||| ||   |||||||||| | ||||||||||||||||          |||||||||||||||||||||||||||||||| |    
T  42180706 tttctctcaaccattatttgcggtcagtattcaccactaccaatcatggttaaaagaaaaaaaatatgacgtgtcatgttttaatttgttgtttgtaata 42180607  T
Q  609 atgatagttaggttcgttcctacacatgaatttctc 644  Q
    ||| |||||||||||||||||||||| |||||||||    
T  42180606 atgctagttaggttcgttcctacacaagaatttctc 42180571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 436 - 653
Target Start/End: Complemental strand, 4157103 - 4156883
Alignment:
Q  436 taaaacatgacacgtcattgttttattttaaaataattaggaaataatttaagaaatgaaaactaactgctcctcctctctctcaaccattatttgcagt 535  Q
    ||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4157103 taaaacattgcacgtcattgttttattttaaaataatttggaaataatttaagaaatgaaaaataactgctcctcctctctctcaaccattatttgcagt 4157004  T
Q  536 ---tattcaccaccagcaatcatggttaaaaggnnnnnnnnntgacgtgtcatgttttaatttgttgtttgtaagaatgatagttaggttcgttcctaca 632  Q
       |||||||||||| ||||||||||||||||          ||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||    
T  4157003 tagtattcaccaccaccaatcatggttaaaagaaaaaaaaaatgacgtgtcatgttttaatttattatttgtaagaatgatagttaggttccttcctaca 4156904  T
Q  633 catgaatttctctaagttttt 653  Q
    || ||||||||| || |||||    
T  4156903 caagaatttctcaaacttttt 4156883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 382 - 645
Target Start/End: Complemental strand, 28217783 - 28217529
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataattaggaaata 481  Q
    |||||||| |||||||||| |||||||| |||||| ||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||            
T  28217783 gagaaattattgtgtaggaacgaacctaacatatcattcttacaaacaacaaatcaaaacatgacacatcattgttttattttaaaataatt-------- 28217692  T
Q  482 atttaagaaatgaaaactaactgctcctcctctctctcaaccattatttgcagt---tattcaccaccagcaatcatggttaaaaggnnnnnnnnntgac 578  Q
       ||||||||||||| ||| |||||||||||||||||||||||||||||||||   |||||||||||| ||||||||||||||| |         ||||    
T  28217691 ---taagaaatgaaaaataattgctcctcctctctctcaaccattatttgcagttactattcaccaccaccaatcatggttaaaa-gaaaaaaaaatgac 28217596  T
Q  579 gtgtcatgttttaatttgttgtttgtaagaatgatagttaggttcgttcctacacatgaatttctct 645  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  28217595 gtgtcatgttttaatttgttgtttgtaagaatgataattaggttcgttcctacacaggaatttctct 28217529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 371 - 617
Target Start/End: Complemental strand, 39669333 - 39669084
Alignment:
Q  371 tataagtttttgagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaata 470  Q
    |||| |||||| |||||||||||||||| | ||||| || |||||| |||||||||| || ||||||||||||||||||| |||||||||||||||||||    
T  39669333 tatatgtttttaagaaattcttgtgtagaaacgaacttaacatatcattcttacaaagaacaaattaaaacatgacacgttattgttttattttaaaata 39669234  T
Q  471 attaggaaataatttaagaaatgaaaactaactgctcctcctctctctcaaccattatttgcagt---tattcaccacc----agcaatcatggttaaaa 563  Q
    |||||||||||||||| |||||||||| |||||||||||||||  ||||||||||||||||| ||   |||||||||||    | |||||||||||||||    
T  39669233 attaggaaataatttaggaaatgaaaaataactgctcctcctc--tctcaaccattatttgcggttaatattcaccaccatcaatcaatcatggttaaaa 39669136  T
Q  564 ggnnnnnnnnntgacgtgtcatgttttaatttgttgtttgtaagaatgatagtt 617  Q
    |          |||||| |||| ||||||||| |||||||||||||||||||||    
T  39669135 g--aaaaaaaatgacgtatcatattttaatttattgtttgtaagaatgatagtt 39669084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 411 - 645
Target Start/End: Original strand, 7062036 - 7062261
Alignment:
Q  411 catatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataattaggaaataatttaagaaatgaaaactaactgctcctc 510  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||           ||||||||||||||||| ||||||||||||    
T  7062036 catatcattcttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaat-----------aatttaagaaatgaaaaataactgctcctc 7062124  T
Q  511 ctctctctcaaccattatttgcagt---tattcaccaccagcaatcatggttaaaag-gnnnnnnnnntgacgtgtcatgttttaatttgttgtttgtaa 606  Q
      |||||||||||||||||||||||   |||||||||||| ||||||||||||||||           ||||||||||| ||||||||||||||||||||    
T  7062125 --ctctctcaaccattatttgcagttagtattcaccaccatcaatcatggttaaaagaaaaaaaaaaatgacgtgtcatattttaatttgttgtttgtaa 7062222  T
Q  607 gaatgatagttaggttcgttcctacacatgaatttctct 645  Q
     |||||||||||||||||||||||||||  |||||||||    
T  7062223 aaatgatagttaggttcgttcctacacaaaaatttctct 7062261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 383 - 492
Target Start/End: Original strand, 50904992 - 50905103
Alignment:
Q  383 agaaattcttgtgtaggatcgaacctagcatat--ccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataattaggaaat 480  Q
    |||||||||||||||||| ||||||||  ||||  | || |||||||||| || ||||||||||||||||||||||||||||||||||| ||| ||||||    
T  50904992 agaaattcttgtgtaggaacgaacctaatatatatcatttttacaaacaacaagttaaaacatgacacgtcattgttttattttaaaattatttggaaat 50905091  T
Q  481 aatttaagaaat 492  Q
    ||||||||||||    
T  50905092 aatttaagaaat 50905103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 380 - 474
Target Start/End: Complemental strand, 26552258 - 26552164
Alignment:
Q  380 ttgagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataatta 474  Q
    |||||||||||||||||||||||||||||| | |||| | ||||||||||| ||||||||| |||||||||| ||||||| ||||||||||||||    
T  26552258 ttgagaaattcttgtgtaggatcgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataatta 26552164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 575 - 644
Target Start/End: Original strand, 48752588 - 48752657
Alignment:
Q  575 tgacgtgtcatgttttaatttgttgtttgtaagaatgatagttaggttcgttcctacacatgaatttctc 644  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  48752588 tgacgtgtcatgttttaatttgttgtttgtaagaatgatagttaggttcgttcatacacaagaatttctc 48752657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 381 - 474
Target Start/End: Original strand, 10227711 - 10227804
Alignment:
Q  381 tgagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataatta 474  Q
    |||||||||||||||||||| |||||||| | || | | ||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||    
T  10227711 tgagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta 10227804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 575 - 646
Target Start/End: Complemental strand, 23346489 - 23346417
Alignment:
Q  575 tgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctcta 646  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  23346489 tgacgtgtcatgttttaatttattgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctcta 23346417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 579 - 645
Target Start/End: Original strand, 10227910 - 10227977
Alignment:
Q  579 gtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctct 645  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||    
T  10227910 gtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctct 10227977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 575 - 644
Target Start/End: Original strand, 48871431 - 48871501
Alignment:
Q  575 tgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctc 644  Q
    |||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  48871431 tgacgtgcaatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 48871501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 576 - 644
Target Start/End: Complemental strand, 10227781 - 10227712
Alignment:
Q  576 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctc 644  Q
    |||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||| |||||||||    
T  10227781 gacgtgtcatgttttaatttgttgtttgtaaggatggtaggttaggttcgttcctacacaagaatttctc 10227712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 576 - 640
Target Start/End: Complemental strand, 19059443 - 19059378
Alignment:
Q  576 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatt 640  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||    
T  19059443 gacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatt 19059378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 379 - 459
Target Start/End: Original strand, 4156889 - 4156968
Alignment:
Q  379 tttgagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgtttt 459  Q
    ||||||||||||||||||||||  ||||||| | |||| |||||||||| |||||||||||||||||||||||||| ||||    
T  4156889 tttgagaaattcttgtgtaggaaggaacctaac-tatcattcttacaaataataaattaaaacatgacacgtcattttttt 4156968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 579 - 645
Target Start/End: Original strand, 28217717 - 28217784
Alignment:
Q  579 gtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctct 645  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||  |||||||||    
T  28217717 gtgtcatgttttgatttgttgtttgtaagaatgatatgttaggttcgttcctacacaataatttctct 28217784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 575 - 644
Target Start/End: Complemental strand, 50893033 - 50892963
Alignment:
Q  575 tgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctc 644  Q
    |||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||  ||||||||    
T  50893033 tgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaagttcgttgctacacaaaaatttctc 50892963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 382 - 459
Target Start/End: Complemental strand, 10227976 - 10227899
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgtttt 459  Q
    ||||||||||||||||||| |||||||| | |||| | ||||||||||| ||||||||||||||||| ||||| ||||    
T  10227976 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacatcattatttt 10227899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 386 - 459
Target Start/End: Original strand, 19059378 - 19059451
Alignment:
Q  386 aattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgtttt 459  Q
    ||||||||||||||| |||||||| | |||| | ||||||||||| |||||||||||||||||||| |||||||    
T  19059378 aattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 19059451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 576 - 644
Target Start/End: Original strand, 26552187 - 26552256
Alignment:
Q  576 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctc 644  Q
    |||||||||| ||||||||||||||||||||| |||||| |||||||||| ||||||||| |||||||||    
T  26552187 gacgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgatcctacacaagaatttctc 26552256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 382 - 454
Target Start/End: Complemental strand, 48752657 - 48752586
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcatt 454  Q
    |||||||||||||||| || |||||||| | |||| ||||||||||||| |||||||||||||||||||||||    
T  48752657 gagaaattcttgtgtatgaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcatt 48752586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 577 - 643
Target Start/End: Original strand, 39669254 - 39669321
Alignment:
Q  577 acgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttct 643  Q
    |||||||||||||||||||||| ||||||||||||||| |||| ||||||| ||||||| ||||||||    
T  39669254 acgtgtcatgttttaatttgttctttgtaagaatgatatgttaagttcgtttctacacaagaatttct 39669321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 382 - 459
Target Start/End: Original strand, 28217530 - 28217606
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgtttt 459  Q
    ||||||||| ||||||||| ||||||||   |||| ||||||||||||| ||||||||||||||||||||||| ||||    
T  28217530 gagaaattcctgtgtaggaacgaacctaat-tatcattcttacaaacaacaaattaaaacatgacacgtcattttttt 28217606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 380 - 453
Target Start/End: Original strand, 42180569 - 42180641
Alignment:
Q  380 ttgagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcat 453  Q
    ||||||||||||||||||||| |||||||| | || | || |||||||||| ||||||||||||||||||||||    
T  42180569 ttgagaaattcttgtgtaggaacgaacctaac-tagcattattacaaacaacaaattaaaacatgacacgtcat 42180641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 382 - 459
Target Start/End: Original strand, 48871247 - 48871323
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgtttt 459  Q
    ||||||||||||||||||| |||||||| | |||| |||||||||| || ||||||||||||||||| ||||| ||||    
T  48871247 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaataacaaattaaaacatgacacatcattttttt 48871323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 382 - 459
Target Start/End: Complemental strand, 50893226 - 50893150
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgtttt 459  Q
    ||||||||||||||||||| |||||||| | |||| || |||||||||| ||||||||||||||||| ||||| ||||    
T  50893226 gagaaattcttgtgtaggaacgaacctaac-tatcattattacaaacaacaaattaaaacatgacacatcattttttt 50893150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 575 - 643
Target Start/End: Complemental strand, 50905063 - 50904992
Alignment:
Q  575 tgacgtgtcatgttttaatttgttgtttgtaagaatgata---gttaggttcgttcctacacatgaatttct 643  Q
    |||||||||||||||||| ||||||||||||| |||||||    ||||||||||||||||||| ||||||||    
T  50905063 tgacgtgtcatgttttaacttgttgtttgtaaaaatgatatatattaggttcgttcctacacaagaatttct 50904992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 391 - 459
Target Start/End: Complemental strand, 23346675 - 23346608
Alignment:
Q  391 ttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgtttt 459  Q
    |||||||||| |||||||| | |||| |||||||||||||||||||||||||||||| |||||| ||||    
T  23346675 ttgtgtaggaacgaacctaac-tatcattcttacaaacaataaattaaaacatgacatgtcattttttt 23346608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 76 - 152
Target Start/End: Complemental strand, 46896035 - 46895959
Alignment:
Q  76 gactttagatagtaagtttttatagaaacttatccattcaatgctttggaaaatgaactatcgaactttttcaataa 152  Q
    |||||||||||||||||||||||||||| |||| |||||||||| | ||||| |||| |||   |||||||||||||    
T  46896035 gactttagatagtaagtttttatagaaatttatgcattcaatgcatcggaaattgaaatattagactttttcaataa 46895959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 575 - 614
Target Start/End: Complemental strand, 7062077 - 7062038
Alignment:
Q  575 tgacgtgtcatgttttaatttgttgtttgtaagaatgata 614  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  7062077 tgacgtgtcatgttttaatttgttgtttgtaagaatgata 7062038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 575 - 644
Target Start/End: Complemental strand, 41833944 - 41833874
Alignment:
Q  575 tgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctc 644  Q
    |||||||||||||||||||||||||| |||||||||||||  |||| |||||| ||| ||| |||||||||    
T  41833944 tgacgtgtcatgttttaatttgttgtgtgtaagaatgatatattagattcgtttctatacaagaatttctc 41833874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 382 - 459
Target Start/End: Complemental strand, 7062260 - 7062184
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgtttt 459  Q
    |||||||| |||||||||| |||||||| | |||| || |||||||||| ||||||||| ||||||||||||| ||||    
T  7062260 gagaaatttttgtgtaggaacgaacctaac-tatcatttttacaaacaacaaattaaaatatgacacgtcattttttt 7062184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 575 - 643
Target Start/End: Original strand, 50905106 - 50905175
Alignment:
Q  575 tgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttct 643  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||| ||||||  ||||||  |||||||    
T  50905106 tgacgtatcatgttttaatttgttgtttgtaagaatgatatgttagattcgtttttacacaaaaatttct 50905175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 381 - 453
Target Start/End: Complemental strand, 41834140 - 41834069
Alignment:
Q  381 tgagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcat 453  Q
    |||||||||||||||||||| ||||| || | || | || |||||||||| ||||||||||||||||||||||    
T  41834140 tgagaaattcttgtgtaggaacgaacataac-tagcattattacaaacaacaaattaaaacatgacacgtcat 41834069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 391 - 474
Target Start/End: Complemental strand, 19059633 - 19059550
Alignment:
Q  391 ttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataatta 474  Q
    |||||||||| |||||||| | |||| | |||| ||| || ||||||||| ||||||| || ||||||| ||||||||||||||    
T  19059633 ttgtgtaggaacgaacctaacctatcatccttataaagaacaaattaaaatatgacacatcgttgttttcttttaaaataatta 19059550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 384 - 459
Target Start/End: Original strand, 26551992 - 26552067
Alignment:
Q  384 gaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgtttt 459  Q
    ||||||||||||||||| |||| ||| | |||| | ||||||||||| ||||||||| ||| |||||| |||||||    
T  26551992 gaaattcttgtgtaggaacgaatctaacctatcatccttacaaacaaaaaattaaaatatggcacgtcgttgtttt 26552067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 576 - 642
Target Start/End: Complemental strand, 26552059 - 26551992
Alignment:
Q  576 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttc 642  Q
    |||||| ||| ||||||||| ||||||||||| |||||| ||||| |||||||||||||| |||||||    
T  26552059 gacgtgccatattttaattttttgtttgtaaggatgataggttagattcgttcctacacaagaatttc 26551992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 579 - 626
Target Start/End: Original strand, 42180770 - 42180817
Alignment:
Q  579 gtgtcatgttttaatttgttgtttgtaagaatgatagttaggttcgtt 626  Q
    ||||||||||||| |||||||||||||||||||||| |||| ||||||    
T  42180770 gtgtcatgttttagtttgttgtttgtaagaatgatatttagattcgtt 42180817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 383 - 454
Target Start/End: Complemental strand, 50905175 - 50905104
Alignment:
Q  383 agaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcatt 454  Q
    ||||||| |||||||  | |||| ||| |||||| ||||||||||||| |||||||||||||| ||||||||    
T  50905175 agaaatttttgtgtaaaaacgaatctaacatatcattcttacaaacaacaaattaaaacatgatacgtcatt 50905104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 38294110 - 38294061
Alignment:
Q  78 ctttagatagtaagtttttatagaaacttatccattcaatgctttggaaa 127  Q
    ||||| ||||||||||||||||||||||| | |||||||||| |||||||    
T  38294110 ctttaaatagtaagtttttatagaaacttgtgcattcaatgcattggaaa 38294061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 579 - 634
Target Start/End: Original strand, 19059576 - 19059632
Alignment:
Q  579 gtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacaca 634  Q
    ||||||| |||||||||||| ||| |||| |||||| ||||||||||||||||||||    
T  19059576 gtgtcatattttaatttgttctttataaggatgataggttaggttcgttcctacaca 19059632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 119
Target Start/End: Original strand, 19547052 - 19547095
Alignment:
Q  76 gactttagatagtaagtttttatagaaacttatccattcaatgc 119  Q
    ||||||| ||||||||||||||||||||||| | ||||||||||    
T  19547052 gactttatatagtaagtttttatagaaacttgtgcattcaatgc 19547095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 158
Target Start/End: Complemental strand, 26766057 - 26765974
Alignment:
Q  76 gactttagatagtaagtttttatagaaacttatccattcaatgctttggaaaatgaactatcgaactttttcaat-aatagttt 158  Q
    ||||||||||||||||||| |||| |||||||| |||||||| | |  |||| |||| |||  |||||||||||| ||||||||    
T  26766057 gactttagatagtaagtttatataaaaacttatgcattcaatccatcagaaattgaaatattaaactttttcaatgaatagttt 26765974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 76 - 106
Target Start/End: Complemental strand, 26297809 - 26297779
Alignment:
Q  76 gactttagatagtaagtttttatagaaactt 106  Q
    |||||||||||||||||||||||||||||||    
T  26297809 gactttagatagtaagtttttatagaaactt 26297779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 119
Target Start/End: Complemental strand, 34582756 - 34582714
Alignment:
Q  77 actttagatagtaagtttttatagaaacttatccattcaatgc 119  Q
    ||||||||||||||||||||||  |||||||| ||||||||||    
T  34582756 actttagatagtaagtttttatgaaaacttatgcattcaatgc 34582714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 413 - 459
Target Start/End: Original strand, 39669087 - 39669133
Alignment:
Q  413 tatccttcttacaaacaataaattaaaacatgacacgtcattgtttt 459  Q
    |||| ||||||||||||||||||||||| |||| |||||||| ||||    
T  39669087 tatcattcttacaaacaataaattaaaatatgatacgtcattttttt 39669133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 166; Significance: 2e-88; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 382 - 645
Target Start/End: Complemental strand, 18936941 - 18936675
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataattaggaaata 481  Q
    ||||||||||||| ||||| ||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  18936941 gagaaattcttgtctaggaacgaacctaatatatcattcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataatttggaaata 18936842  T
Q  482 atttaagaaatgaaaactaactgctcctcctctctctcaaccattatttgcagt---tattcaccaccagcaatcatggttaaaaggnnnnnnnnntgac 578  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||||||||   |||||||||||| |||||||| |||||||          ||||    
T  18936841 atttaagaaatgaaaaataactgctcctcctctctctcgaccattatttgcagttagtattcaccaccaccaatcatgattaaaagaagaaaaaaatgac 18936742  T
Q  579 gtgtcatgttttaatttgttgtttgtaagaatgatagttaggttcgttcctacacatgaatttctct 645  Q
    || ||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||    
T  18936741 gtatcatgttttaatttgttgtttgtaagaatgatagttatgttcgttcatacacaagaatttctct 18936675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 382 - 645
Target Start/End: Complemental strand, 37177890 - 37177623
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataattaggaaata 481  Q
    ||||||||||||| ||||| ||||| || |||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  37177890 gagaaattcttgtctaggaacgaacataacatatcattcttacaaacaacaaattaaaacatgatacgtcattgttttattttaaaataatttggaaata 37177791  T
Q  482 atttaagaaatgaaaactaactgctcctcctctctctcaaccattatttgcagt---tattcaccaccagcaatcatggttaaaag-gnnnnnnnnntga 577  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||||||||   |||| ||||||| |||||||  |||||||           | |    
T  37177790 atttaagaaatgaaaaataacagctcctcctctctctcaaccattatttgcagttagtatttaccaccaccaatcataattaaaagaaaaaaaaaaatta 37177691  T
Q  578 cgtgtcatgttttaatttgttgtttgtaagaatgatagttaggttcgttcctacacatgaatttctct 645  Q
    | |||||| ||||||||| |||||||||||||||||| ||   |||||||||||| | ||||||||||    
T  37177690 catgtcatattttaatttattgtttgtaagaatgataattgaattcgttcctacagaagaatttctct 37177623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 645 - 781
Target Start/End: Complemental strand, 40062083 - 40061947
Alignment:
Q  645 taagtttttataaccacacaccccttgatatcatatagatccaattcacgacgaatttacggtgttaacaatttttgaatccattttcgaccagatttta 744  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||    
T  40062083 taagtttttataaccacacaccccttgatatcctatagatccaattcacgacggatttacggtgttaacaatttttgaactcattttcgaccagatttta 40061984  T
Q  745 cttaccttttggatcgaaccctagattaccaaggtca 781  Q
    |||| ||||||||||||||||||||||||||||||||    
T  40061983 cttatcttttggatcgaaccctagattaccaaggtca 40061947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 382 - 641
Target Start/End: Original strand, 11147014 - 11147285
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtc-----attgttttattttaaaataattagg 476  Q
    ||||||||||||||||||| ||||||||  ||||| ||||||||||||| ||||||||||||||||||||     |||||||||||||||||||||| ||    
T  11147014 gagaaattcttgtgtaggaacgaacctaatatatcattcttacaaacaacaaattaaaacatgacacgtcttgtcattgttttattttaaaataatttgg 11147113  T
Q  477 aaataatttaagaaatgaaaactaactgctcctcctctctctcaaccattatttgcagt---tattcaccaccagcaatcatggtta----aaaggnnnn 569  Q
    ||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||| ||   |||||||||||| ||||||||||||    ||||         
T  11147114 aaataatttaagaaaggaaaaataaatgctcctcctctctctcaaccattatttgctgttagtattcaccaccaccaatcatggttaaaagaaagaaaaa 11147213  T
Q  570 nnnnntgacgtgtcatgttttaatttgttgtttgtaagaatgatagttaggttcgttcctacacatgaattt 641  Q
         |||| |||||| ||||||||| |||||||||||||| |||||||| |||||| ||||| | ||||||    
T  11147214 aaaaatgacatgtcatattttaatttattgtttgtaagaataatagttagattcgtttctacataagaattt 11147285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 40062461 - 40062260
Alignment:
Q  17 aattgacgttgctagcatgaataattatatagagaacattatttaaaaggttttgtta-----------------cgactttagatagtaagtttttata 99  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||                 ||| |||| ||| ||| ||||||||    
T  40062461 aattgacgttgctagcatgagtaattatatagagaacattatttaaagagttttgttaacgagtgcactcttgaacgattttaaataataaatttttata 40062362  T
Q  100 gaaacttatccattcaatgctttggaaaatgaactatcgaactttttcaataatagtttcttaacaagttttagaggtaataaaagtacctataaaaaca 199  Q
    |||| |  | |||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40062361 gaaattcgtgcattcaatgcattggaaaatgaaatattgaactttttcaataatagtttcttaacaagttttagaggtaataaaagtacctataaaaaca 40062262  T
Q  200 ag 201  Q
    ||    
T  40062261 ag 40062260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 241 - 325
Target Start/End: Complemental strand, 40062220 - 40062136
Alignment:
Q  241 gtaataaaagtatctataataaatttataattccatatttaattaggacggatactcttgagtcttgagtgtacatgcaatgcca 325  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40062220 gtaataaaagtatctataataaatttataattccatatttaattaggacggatactcttgagtcttgagtgtacatgcaatgcca 40062136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 378 - 474
Target Start/End: Complemental strand, 3102808 - 3102712
Alignment:
Q  378 ttttgagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataatta 474  Q
    ||||||||||||||||||||||| |||||||| | |||| | ||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||    
T  3102808 ttttgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttttttttaaaataatta 3102712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 382 - 474
Target Start/End: Complemental strand, 40534227 - 40534135
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataatta 474  Q
    ||||||||||||||||||| |||||||| | |||| | ||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||    
T  40534227 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta 40534135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 382 - 467
Target Start/End: Complemental strand, 18381573 - 18381488
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaa 467  Q
    ||||||||||||||||||| |||||||| ||| || ||||||||| ||| ||||||||||||||||| ||||||||||||||||||    
T  18381573 gagaaattcttgtgtaggaacgaacctaacatttcattcttacaagcaacaaattaaaacatgacacatcattgttttattttaaa 18381488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 576 - 646
Target Start/End: Complemental strand, 11147083 - 11147012
Alignment:
Q  576 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctcta 646  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||    
T  11147083 gacgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgttcctacacaagaatttctcta 11147012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 576 - 645
Target Start/End: Complemental strand, 40534032 - 40533962
Alignment:
Q  576 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctct 645  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  40534032 gacgtatcatgttttaatttgttgtttgtaagaatgataggttaggttcgttcctacacaagaatttctct 40533962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 576 - 644
Target Start/End: Original strand, 3102735 - 3102804
Alignment:
Q  576 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctc 644  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||    
T  3102735 gacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 3102804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 576 - 644
Target Start/End: Original strand, 40534158 - 40534227
Alignment:
Q  576 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctc 644  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||    
T  40534158 gacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 40534227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 579 - 645
Target Start/End: Original strand, 5121005 - 5121072
Alignment:
Q  579 gtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctct 645  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||    
T  5121005 gtgtcatgttttaatttgttgtttgtaagaatgatatgttaggtttgttcctacacaagaatttctct 5121072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 576 - 645
Target Start/End: Complemental strand, 3102609 - 3102539
Alignment:
Q  576 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctct 645  Q
    ||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||    
T  3102609 gacgtatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctct 3102539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 381 - 459
Target Start/End: Original strand, 9231579 - 9231657
Alignment:
Q  381 tgagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgtttt 459  Q
    |||||||||||||||||||| |||||||||| || | | ||||||||||| |||||||||||||||||||| |||||||    
T  9231579 tgagaaattcttgtgtaggaacgaacctagcctaccatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 9231657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 382 - 459
Target Start/End: Original strand, 40533963 - 40534040
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgtttt 459  Q
    ||||||||||||||||||| |||||||| | |||| ||||||||||||| |||||||||||||| ||||| |||||||    
T  40533963 gagaaattcttgtgtaggaacgaacctaacctatcattcttacaaacaacaaattaaaacatgatacgtcgttgtttt 40534040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 576 - 643
Target Start/End: Complemental strand, 13690284 - 13690216
Alignment:
Q  576 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttct 643  Q
    ||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||    
T  13690284 gacgtatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttct 13690216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 575 - 646
Target Start/End: Original strand, 18936871 - 18936943
Alignment:
Q  575 tgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctcta 646  Q
    ||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||| ||| |||||||||||    
T  18936871 tgacgtgtcatgttttaatttattgtttgtaagaatgatatattaggttcgttcctagacaagaatttctcta 18936943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 382 - 453
Target Start/End: Complemental strand, 5121071 - 5121000
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcat 453  Q
    ||||||||||||||||||| | |||||| |||||| ||||||||||||| ||||||||||||||||| ||||    
T  5121071 gagaaattcttgtgtaggaacaaacctaacatatcattcttacaaacaacaaattaaaacatgacacatcat 5121000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 579 - 645
Target Start/End: Original strand, 18381507 - 18381574
Alignment:
Q  579 gtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctct 645  Q
    ||||||||||||||||||||| |||||||||||| | |||||||||||||||||||| ||||||||||    
T  18381507 gtgtcatgttttaatttgttgcttgtaagaatgaaatgttaggttcgttcctacacaagaatttctct 18381574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 575 - 645
Target Start/End: Original strand, 37177820 - 37177891
Alignment:
Q  575 tgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctct 645  Q
    |||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||| ||| ||||||||||    
T  37177820 tgacgtatcatgttttaatttgttgtttgtaagaatgatatgttatgttcgttcctagacaagaatttctct 37177891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 382 - 459
Target Start/End: Original strand, 3102540 - 3102617
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgtttt 459  Q
    ||||||||||||||||||| |||||||| | |||| | ||||||||||| |||||||||||||| ||||| |||||||    
T  3102540 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgtttt 3102617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 576 - 644
Target Start/End: Complemental strand, 9231649 - 9231580
Alignment:
Q  576 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctc 644  Q
    |||||||||||||||||||||||||||||||| ||| || | |||||||||||||||||| |||||||||    
T  9231649 gacgtgtcatgttttaatttgttgtttgtaaggatggtaggctaggttcgttcctacacaagaatttctc 9231580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 383 - 459
Target Start/End: Original strand, 13690216 - 13690292
Alignment:
Q  383 agaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgtttt 459  Q
    |||||||||||||||||| |||||||| | |||| | ||||||||||| |||||||||||||| ||||| |||||||    
T  13690216 agaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgtttt 13690292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 382 - 459
Target Start/End: Original strand, 18936676 - 18936752
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgtttt 459  Q
    |||||||||||||||| || ||||| || | |||| ||||||||||||| |||||||||||||| |||||||| ||||    
T  18936676 gagaaattcttgtgtatgaacgaacataac-tatcattcttacaaacaacaaattaaaacatgatacgtcattttttt 18936752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 402 - 474
Target Start/End: Complemental strand, 9231824 - 9231752
Alignment:
Q  402 cgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataatta 474  Q
    |||||||| | |||| | ||||||||||| |||||||||||||  ||||| ||||||| ||||||||||||||    
T  9231824 cgaacctaacctatcatccttacaaacaacaaattaaaacatgctacgtcgttgttttcttttaaaataatta 9231752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 583 - 625
Target Start/End: Original strand, 9231782 - 9231825
Alignment:
Q  583 catgttttaatttgttgtttgtaagaatgata-gttaggttcgt 625  Q
    ||||||||||||||||||||||||| |||||| |||||||||||    
T  9231782 catgttttaatttgttgtttgtaaggatgataggttaggttcgt 9231825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 194
Target Start/End: Complemental strand, 40062236 - 40062202
Alignment:
Q  160 ttaacaagttttagaggtaataaaagtacctataa 194  Q
    |||||||||||||||||||||||||||| ||||||    
T  40062236 ttaacaagttttagaggtaataaaagtatctataa 40062202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 418 - 459
Target Start/End: Complemental strand, 11147253 - 11147212
Alignment:
Q  418 ttcttacaaacaataaattaaaacatgacacgtcattgtttt 459  Q
    ||||||||||||||||||||||| |||||| |||||| ||||    
T  11147253 ttcttacaaacaataaattaaaatatgacatgtcattttttt 11147212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 344 - 381
Target Start/End: Complemental strand, 40062112 - 40062075
Alignment:
Q  344 tgtgatgacggttaatttgtgtattaatataagttttt 381  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  40062112 tgtgatgactgttagtttgtgtattaatataagttttt 40062075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 165; Significance: 8e-88; HSPs: 53)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 165; E-Value: 8e-88
Query Start/End: Original strand, 382 - 644
Target Start/End: Complemental strand, 5146767 - 5146504
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataattaggaaata 481  Q
    ||||||||||||||||| | ||||||||  ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5146767 gagaaattcttgtgtagaaacgaacctaatatatcattcttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataattaggaaata 5146668  T
Q  482 atttaagaaatgaaaactaactgctcctcctctctctcaaccattatttgcagt---tattcaccaccagcaatcatggttaaaaggnnnnnnnnntgac 578  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||||||||||   |||||||||||| ||||||||||||||||          | ||    
T  5146667 atttaagaaatgaaaaataactcctcctcctctctctcaaccattatttgcagttagtattcaccaccaccaatcatggttaaaag--aaaaaaaataac 5146570  T
Q  579 gtgtcatgttttaatttgttgtttgtaagaatgatagttaggttcgttcctacacatgaatttctc 644  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||    
T  5146569 gtgtcatgttttaatttattgtttgtaagaatgatagttaggttcgttcctacacaataatttctc 5146504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 385 - 644
Target Start/End: Complemental strand, 35454710 - 35454451
Alignment:
Q  385 aaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataattaggaaataatt 484  Q
    |||||||||||||||| |||||||| | |||| ||||||||||||| ||||||||||||||||||||||||||||| || ||||||||| ||||||||||    
T  35454710 aaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcattgttttagttaaaaataatttggaaataatt 35454612  T
Q  485 taagaaatgaaaactaactgctcctcctctctctcaaccattatttgcagt---tattcaccaccagcaatcatggttaaaaggnnnnnnnnntgacgtg 581  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||||||   |||||||||||| ||||||||||||||||          |||||||    
T  35454611 taagaaatgaaaaataactgctcgtcctctctctcaaccattatttgcagttagtattcaccaccaccaatcatggttaaaag--aaaaaaaatgacgtg 35454514  T
Q  582 tcatgttttaatttgttgtttgtaagaatgatagttaggttcgttcctacacatgaatttctc 644  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  35454513 tcatgttttaatttgttgtttgtaagaatgatagttaggttcgttcatacacaagaatttctc 35454451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 150; E-Value: 7e-79
Query Start/End: Original strand, 381 - 645
Target Start/End: Original strand, 6518202 - 6518467
Alignment:
Q  381 tgagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataattaggaaat 480  Q
    |||||||||||||||||||| |||||||| |||||| ||||||||||||| ||||||||||||  || ||||||||||||||||||||||||| ||||||    
T  6518202 tgagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacattgcatgtcattgttttattttaaaataatttggaaat 6518301  T
Q  481 aatttaagaaatgaaaactaactgctcctcctctctctcaaccattatttgcagt---tattcaccaccagcaatcatggttaaaaggnnnnnnnnntga 577  Q
    ||||||||||||||||| ||| || ||||||||||||||||||||||||||| ||   |||||||||||| |||||||||||||||||         |||    
T  6518302 aatttaagaaatgaaaaataattgttcctcctctctctcaaccattatttgccgttagtattcaccaccaccaatcatggttaaaagg--aaaaaaatga 6518399  T
Q  578 cgtgtcatgttttaatttgttgtttgtaagaatgatagttaggttcgttcctacacatgaatttctct 645  Q
     || |||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  6518400 tgtatcatattttaatttgttgtttgtaagaatgatagttaggttcgttactacacaagaatttctct 6518467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 382 - 645
Target Start/End: Complemental strand, 13823412 - 13823149
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataattaggaaata 481  Q
    ||||||||||||||||||| ||||| || |||||| || ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13823412 gagaaattcttgtgtaggaacgaacttaacatatcatttttacaaataacaaattaaaacatgacacgtcattgttttattttaaaataattaggaaata 13823313  T
Q  482 atttaagaaatgaaaactaactgctcctcctctctctcaaccattatttgcagt---tattcaccaccagcaatcatggttaaaaggnnnnnnnnntgac 578  Q
    |||||||||||||||| ||| |||||||||||| |||||||||||||||||| |   |||||||||||| ||||||||||||||||            ||    
T  13823312 atttaagaaatgaaaaataattgctcctcctctttctcaaccattatttgcacttagtattcaccaccaccaatcatggttaaaagaaaaaaaat---ac 13823216  T
Q  579 gtgtcatgttttaatttgttgtttgtaagaatgatagttaggttcgttcctacacatgaatttctct 645  Q
    ||||||||||||| ||| |||||| || |||||||||||||||||||||||||||| ||||||||||    
T  13823215 gtgtcatgttttagtttattgtttatacgaatgatagttaggttcgttcctacacaagaatttctct 13823149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 381 - 564
Target Start/End: Complemental strand, 33377913 - 33377725
Alignment:
Q  381 tgagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataattaggaaat 480  Q
    |||||||||||| ||||||| |||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33377913 tgagaaattcttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataattaggaaat 33377814  T
Q  481 aatttaagaaatgaaaactaactgctc--ctcctctctctcaaccattatttgcagt---tattcaccaccagcaatcatggttaaaag 564  Q
    |||||||||||| |||| |||||||||  ||||||||||||||||||||||||||||   |||||||||||| ||||||||||||||||    
T  33377813 aatttaagaaataaaaaataactgctcctctcctctctctcaaccattatttgcagttagtattcaccaccaccaatcatggttaaaag 33377725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 382 - 532
Target Start/End: Original strand, 228717 - 228867
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataattaggaaata 481  Q
    ||||||||  ||||||||| |||||||| |||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  228717 gagaaattactgtgtaggaacgaacctaacatatcattcttataaacaataaattaaaacatgacacgttattgttttattttaaaataattaggaaata 228816  T
Q  482 atttaagaaatgaaaactaactgctcctcctctctctcaaccattatttgc 532  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  228817 atttaagaaatgaaaactaactgctcctcctctctctcaaccattatttgc 228867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 481 - 634
Target Start/End: Complemental strand, 19897391 - 19897235
Alignment:
Q  481 aatttaagaaatgaaaactaactgctcctcctctctctcaaccattatttgcagtta---ttcaccaccagcaatcatggttaaaaggnnnnnnnnntga 577  Q
    ||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||   |||||||||| ||||||||||||||||          |||    
T  19897391 aatttaagaaatgaaaaataaatgttcctcctctctctcaaccattatttgcagttagtattcaccaccaccaatcatggttaaaagagaaaaaatatga 19897292  T
Q  578 cgtgtcatgttttaatttgttgtttgtaagaatgatagttaggttcgttcctacaca 634  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19897291 cgtgtcatgttttaatttgttgtttgtaagaatgatagttaggttcgttcctacaca 19897235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 380 - 497
Target Start/End: Original strand, 40881790 - 40881905
Alignment:
Q  380 ttgagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataattaggaaa 479  Q
    |||||||||| |||||||||| |||||||| |||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  40881790 ttgagaaattgttgtgtaggaacgaacctaacatta--ttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataatttggaaa 40881887  T
Q  480 taatttaagaaatgaaaa 497  Q
    ||||||||||||||||||    
T  40881888 taatttaagaaatgaaaa 40881905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 382 - 493
Target Start/End: Original strand, 8489123 - 8489234
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataattaggaaata 481  Q
    ||||||||||||||||||| | || ||| |||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  8489123 gagaaattcttgtgtaggaacaaatctaacatatcattcttacaaacaacaaattaaaatatgacacgtcattgttttattttaaaataatttggaaata 8489222  T
Q  482 atttaagaaatg 493  Q
    ||||||||||||    
T  8489223 atttaagaaatg 8489234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 402 - 527
Target Start/End: Complemental strand, 40882063 - 40881940
Alignment:
Q  402 cgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataattaggaaataatttaagaaatgaaaactaa 501  Q
    |||| ||| |||||| ||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||  ||    
T  40882063 cgaatctaacatatcattcttacaaacaacaaattaaaatatgacacgttattgttttattttaaaataatttggaaataatttaagaaatggaaaacaa 40881964  T
Q  502 ctgctcctcctctctctcaaccatta 527  Q
    || |||||  ||||||||||||||||    
T  40881963 ctactcct--tctctctcaaccatta 40881940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 411 - 634
Target Start/End: Complemental strand, 27319702 - 27319489
Alignment:
Q  411 catatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataattaggaaataatttaagaaatgaaaactaactgctcctc 510  Q
    |||||| ||||||||||||| ||||||||| |||| || |||||||||||||||||||||            ||||||||||||||| ||| |||| |||    
T  27319702 catatcattcttacaaacaacaaattaaaatatgaaacatcattgttttattttaaaata------------tttaagaaatgaaaaataattgcttctc 27319615  T
Q  511 ctctctctcaaccattatttgcagtt---attcaccaccagcaatcatggttaaaaggnnnnnnnnntgacgtgtcatgttttaatttgttgtttgtaag 607  Q
    |||||||||||||||||||||||| |   ||||||||||| ||||||||||||||| |         | |||| |||||||||||||| || ||||||||    
T  27319614 ctctctctcaaccattatttgcagctaggattcaccaccaccaatcatggttaaaa-gaaaataaaataacgtatcatgttttaatttattatttgtaag 27319516  T
Q  608 aatgatagttaggttcgttcctacaca 634  Q
    ||||||||||| |||| || |||||||    
T  27319515 aatgatagttaagttcattactacaca 27319489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 381 - 473
Target Start/End: Complemental strand, 19899019 - 19898927
Alignment:
Q  381 tgagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataatt 473  Q
    |||||||||||||||||||| |||||||| |||||| || ||| |||||| |||||||||||||||| |||||||||||||||||||||||||    
T  19899019 tgagaaattcttgtgtaggaacgaacctaacatatcatttttataaacaacaaattaaaacatgacatgtcattgttttattttaaaataatt 19898927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 384 - 474
Target Start/End: Complemental strand, 8323970 - 8323880
Alignment:
Q  384 gaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataatta 474  Q
    ||||||||||||||||| |||||||| |||||| | ||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||    
T  8323970 gaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta 8323880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 575 - 641
Target Start/End: Original strand, 35454644 - 35454710
Alignment:
Q  575 tgacgtgtcatgttttaatttgttgtttgtaagaatgatagttaggttcgttcctacacatgaattt 641  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  35454644 tgacgtgtcatgttttaatttgttgtttgtaagaatgatagttaggttcgttcctacacaagaattt 35454710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 575 - 644
Target Start/End: Original strand, 14388514 - 14388583
Alignment:
Q  575 tgacgtgtcatgttttaatttgttgtttgtaagaatgatagttaggttcgttcctacacatgaatttctc 644  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  14388514 tgacgtgtcatgttttaatttgttgtttgtaagaatgatagttaggtttgttcctacacaagaatttctc 14388583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 577 - 645
Target Start/End: Complemental strand, 14069928 - 14069860
Alignment:
Q  577 acgtgtcatgttttaatttgttgtttgtaagaatgatagttaggttcgttcctacacatgaatttctct 645  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  14069928 acgtgtcatgttttaatttgttgtttataagaatgatagttaggttcgttcctacacaagaatttctct 14069860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 382 - 474
Target Start/End: Complemental strand, 26534762 - 26534670
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataatta 474  Q
    ||||||||||||||||||| |||||||| | |||| | ||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||    
T  26534762 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta 26534670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 377 - 459
Target Start/End: Original strand, 8323702 - 8323784
Alignment:
Q  377 tttttgagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgtttt 459  Q
    |||||||||||||||||||||||| |||||||| | |||| |  ||||||||||||||||||||||||||||||| |||||||    
T  8323702 tttttgagaaattcttgtgtaggaacgaacctaacctatcatctttacaaacaataaattaaaacatgacacgtcgttgtttt 8323784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 576 - 645
Target Start/End: Original strand, 26534693 - 26534763
Alignment:
Q  576 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctct 645  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||    
T  26534693 gacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctct 26534763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 575 - 644
Target Start/End: Original strand, 33377842 - 33377912
Alignment:
Q  575 tgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctc 644  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||    
T  33377842 tgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacataagaatttctc 33377912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 385 - 474
Target Start/End: Complemental strand, 42630968 - 42630879
Alignment:
Q  385 aaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataatta 474  Q
    |||||||||||||||  |||||||| | |||| | ||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||    
T  42630968 aaattcttgtgtaggcacgaacctaacctatcatccttacaaacaataaattaaaatatgacacgtcgttgttttcttttaaaataatta 42630879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 382 - 474
Target Start/End: Original strand, 791592 - 791684
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataatta 474  Q
    |||||||| |||||||||| |||||||| | || | | ||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||    
T  791592 gagaaatttttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta 791684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 575 - 645
Target Start/End: Original strand, 5146697 - 5146768
Alignment:
Q  575 tgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctct 645  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||| ||||||||||    
T  5146697 tgacgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtttctacacaagaatttctct 5146768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 576 - 642
Target Start/End: Original strand, 8323903 - 8323970
Alignment:
Q  576 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttc 642  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||    
T  8323903 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttc 8323970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 380 - 474
Target Start/End: Complemental strand, 130514 - 130420
Alignment:
Q  380 ttgagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataatta 474  Q
    ||||||||||||| ||||| | |||||||| | |||| | ||||||||||| |||||||||||| ||||||| ||||||| ||||||||||||||    
T  130514 ttgagaaattcttttgtagtaacgaacctaacctatcatccttacaaacaacaaattaaaacataacacgtcgttgttttcttttaaaataatta 130420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 584 - 644
Target Start/End: Complemental strand, 6518264 - 6518203
Alignment:
Q  584 atgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctc 644  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  6518264 atgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 6518203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 576 - 644
Target Start/End: Complemental strand, 26534575 - 26534506
Alignment:
Q  576 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctc 644  Q
    ||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||| |||||||||    
T  26534575 gacgtgtcatgttttaatttgttgtttgtaaggttgataggttaggttcgttcctacacaagaatttctc 26534506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 378 - 459
Target Start/End: Original strand, 35454447 - 35454527
Alignment:
Q  378 ttttgagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgtttt 459  Q
    |||||||||||||||||||| || |||||||| | |||| ||||||||||||| ||||||||||||||||||||||| ||||    
T  35454447 ttttgagaaattcttgtgtatgaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcattttttt 35454527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 575 - 645
Target Start/End: Complemental strand, 8489193 - 8489122
Alignment:
Q  575 tgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctct 645  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||| || ||||||||||| ||||||||||    
T  8489193 tgacgtgtcatattttaatttgttgtttgtaagaatgatatgttagatttgttcctacacaagaatttctct 8489122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 379 - 454
Target Start/End: Complemental strand, 14388586 - 14388512
Alignment:
Q  379 tttgagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcatt 454  Q
    |||||||||||||||||||||| | |||||| | |||| ||||||||||||| |||||||||||||||||||||||    
T  14388586 tttgagaaattcttgtgtaggaacaaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcatt 14388512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 576 - 645
Target Start/End: Complemental strand, 130323 - 130253
Alignment:
Q  576 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctct 645  Q
    ||||||||||||||||||||||||||||||||  ||| | |||||||||||||||||||| ||||||||||    
T  130323 gacgtgtcatgttttaatttgttgtttgtaaggttgacaggttaggttcgttcctacacaagaatttctct 130253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 575 - 644
Target Start/End: Original strand, 13823342 - 13823412
Alignment:
Q  575 tgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctc 644  Q
    |||||||||||||||||||||||| ||||||| ||||||| |||| ||||||||||||||| |||||||||    
T  13823342 tgacgtgtcatgttttaatttgttatttgtaaaaatgatatgttaagttcgttcctacacaagaatttctc 13823412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 575 - 644
Target Start/End: Original strand, 19898948 - 19899018
Alignment:
Q  575 tgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctc 644  Q
    |||| ||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||| |||||||||    
T  19898948 tgacatgtcatgttttaatttgttgtttataaaaatgatatgttaggttcgttcctacacaagaatttctc 19899018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 500 - 564
Target Start/End: Original strand, 228888 - 228955
Alignment:
Q  500 aactgctcctcctctctctcaaccattatttgcagt---tattcaccaccagcaatcatggttaaaag 564  Q
    ||||||||||||||||||||||||||||||||| ||   |||||||||||| ||||||||||||||||    
T  228888 aactgctcctcctctctctcaaccattatttgcggttggtattcaccaccaccaatcatggttaaaag 228955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 576 - 644
Target Start/End: Complemental strand, 791661 - 791592
Alignment:
Q  576 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctc 644  Q
    |||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||  ||||||||    
T  791661 gacgtgtcatgttttaatttgttgtttgtaaggatggtaggttaggttcgttcctacacaaaaatttctc 791592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 382 - 459
Target Start/End: Original strand, 5146504 - 5146580
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgtttt 459  Q
    |||||||| |||||||||| |||||||| | |||| ||||||||||||||||||||||||||||||||| ||| ||||    
T  5146504 gagaaattattgtgtaggaacgaacctaac-tatcattcttacaaacaataaattaaaacatgacacgttattttttt 5146580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 576 - 644
Target Start/End: Complemental strand, 8323776 - 8323707
Alignment:
Q  576 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctc 644  Q
    |||||||||||||||||||| ||||||||||  |||||| |||||||||||||||||||| |||||||||    
T  8323776 gacgtgtcatgttttaatttattgtttgtaaagatgataggttaggttcgttcctacacaagaatttctc 8323707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 382 - 459
Target Start/End: Original strand, 26534506 - 26534583
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgtttt 459  Q
    ||||||||||||||||||| |||||||| | ||||   ||||||||||| |||||||||||||||||||| |||||||    
T  26534506 gagaaattcttgtgtaggaacgaacctaacctatcaaccttacaaacaacaaattaaaacatgacacgtcgttgtttt 26534583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 575 - 644
Target Start/End: Complemental strand, 40881860 - 40881792
Alignment:
Q  575 tgacgtgtcatgttttaatttgttgtttgtaagaatgatagttaggttcgttcctacacatgaatttctc 644  Q
    ||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||  ||||||||    
T  40881860 tgacgtgtcatgttttaatttattgtttgtaagaataat-gttaggttcgttcctacacaacaatttctc 40881792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 577 - 644
Target Start/End: Complemental strand, 228785 - 228717
Alignment:
Q  577 acgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctc 644  Q
    ||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||  ||||||||    
T  228785 acgtgtcatgttttaatttattgtttataagaatgatatgttaggttcgttcctacacagtaatttctc 228717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 584 - 634
Target Start/End: Original strand, 228987 - 229037
Alignment:
Q  584 atgttttaatttgttgtttgtaagaatgatagttaggttcgttcctacaca 634  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  228987 atgttttaatttgttgtttgtaagaatgatagttatgttcgtttctacaca 229037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 379 - 453
Target Start/End: Original strand, 19897222 - 19897295
Alignment:
Q  379 tttgagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcat 453  Q
    ||||| ||||| |||||||||| |||||||| | |||| ||||||||||||| ||||||||||||||||||||||    
T  19897222 tttgaaaaattattgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcat 19897295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 579 - 644
Target Start/End: Complemental strand, 42630777 - 42630711
Alignment:
Q  579 gtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctc 644  Q
    ||||||||||||| ||||||||||||||| |||||| ||||||||||||| |||||| |||||||||    
T  42630777 gtgtcatgttttagtttgttgtttgtaaggatgataggttaggttcgttcatacacaagaatttctc 42630711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 382 - 459
Target Start/End: Original strand, 130254 - 130331
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgtttt 459  Q
    ||||||||||||||||||| |||||||| | | ||   ||||||||||| |||||||||||||||||||| |||||||    
T  130254 gagaaattcttgtgtaggaacgaacctaacctgtcaaccttacaaacaacaaattaaaacatgacacgtcgttgtttt 130331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #45
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 576 - 644
Target Start/End: Original strand, 130443 - 130512
Alignment:
Q  576 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctc 644  Q
    ||||||| |||||||||||||||||||||||| |||||| |||||||||||| ||||| | |||||||||    
T  130443 gacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttactacaaaagaatttctc 130512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #46
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 382 - 459
Target Start/End: Original strand, 42630711 - 42630788
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgtttt 459  Q
    |||||||||||||||| || |||||||| | |||| | ||||||||||| ||| ||||||||||||| ||||||||||    
T  42630711 gagaaattcttgtgtatgaacgaacctaacctatcatccttacaaacaacaaactaaaacatgacacttcattgtttt 42630788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #47
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 382 - 450
Target Start/End: Original strand, 14069861 - 14069928
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgt 450  Q
    ||||||||||||||||||| |||||||| | |||| |||||| |||||| |||||||||||||||||||    
T  14069861 gagaaattcttgtgtaggaacgaacctaac-tatcattcttataaacaacaaattaaaacatgacacgt 14069928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #48
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 576 - 641
Target Start/End: Original strand, 42630902 - 42630968
Alignment:
Q  576 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaattt 641  Q
    |||||||||| ||||||||| ||||||||||| |||||| ||||||||||| |||||||| ||||||    
T  42630902 gacgtgtcatattttaatttattgtttgtaaggatgataggttaggttcgtgcctacacaagaattt 42630968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #49
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 588 - 644
Target Start/End: Original strand, 791810 - 791867
Alignment:
Q  588 tttaatttgttgtttgtaagaatgatag-ttaggttcgttcctacacatgaatttctc 644  Q
    |||||||||||||||||||  ||||||| ||||||||||||||||||| |||||||||    
T  791810 tttaatttgttgtttgtaaagatgataggttaggttcgttcctacacaagaatttctc 791867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #50
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 382 - 450
Target Start/End: Original strand, 13823150 - 13823217
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgt 450  Q
    ||||||||||||||||||| |||||||| | |||| ||| || |||||||||| |||||||||||||||    
T  13823150 gagaaattcttgtgtaggaacgaacctaac-tatcattcgtataaacaataaactaaaacatgacacgt 13823217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #51
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 577 - 627
Target Start/End: Original strand, 40882015 - 40882066
Alignment:
Q  577 acgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttc 627  Q
    ||||||||| |||||||||||||||||||||||||||| ||||| |||||||    
T  40882015 acgtgtcatattttaatttgttgtttgtaagaatgatatgttagattcgttc 40882066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #52
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 791871 - 791810
Alignment:
Q  378 ttttgagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaa 439  Q
    ||||||||||||||||||||||| |||||||| | |||| |  |||||||||| ||||||||    
T  791871 ttttgagaaattcttgtgtaggaacgaacctaacctatcatctttacaaacaacaaattaaa 791810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #53
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 382 - 459
Target Start/End: Complemental strand, 6518466 - 6518390
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgtttt 459  Q
    ||||||||||||||||| | |||||||| | |||| ||||||||||||| ||||||||| |||| || ||||| ||||    
T  6518466 gagaaattcttgtgtagtaacgaacctaac-tatcattcttacaaacaacaaattaaaatatgatacatcattttttt 6518390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 163; Significance: 1e-86; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 381 - 641
Target Start/End: Complemental strand, 36635503 - 36635241
Alignment:
Q  381 tgagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataattaggaaat 480  Q
    |||||||||||||||||||| |||||||| |||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  36635503 tgagaaattcttgtgtaggaacgaacctaacatatcatttttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataattaggaaat 36635404  T
Q  481 aatttaagaaatgaaaactaactgctcctcctctctctcaaccattatttgcagt---tattcaccaccagcaatcatggttaaaaggnnnnnnnnntga 577  Q
    ||||||||||||||||| |||||||| ||||||| |||||||||||||||||| |   |||||||||||| ||||||||||||||||          | |    
T  36635403 aatttaagaaatgaaaaataactgcttctcctctttctcaaccattatttgcacttagtattcaccaccaccaatcatggttaaaagaaaaaaaaaat-a 36635305  T
Q  578 cgtgtcatgttttaatttgttgtttgtaagaatgatagttaggttcgttcctacacatgaattt 641  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  36635304 cgtgtcatgttttaatttgttgtttgtaacaatgatagttaggttcgttcctacacaagaattt 36635241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 382 - 564
Target Start/End: Complemental strand, 19580574 - 19580389
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataattaggaaata 481  Q
    ||||||||||||| ||||| |||||||| |||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||   |||||    
T  19580574 gagaaattcttgtataggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataattttaaaata 19580475  T
Q  482 atttaagaaatgaaaactaactgctcctcctctctctcaaccattatttgcagt---tattcaccaccagcaatcatggttaaaag 564  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||   |||||||||||| ||||||||||||||||    
T  19580474 atttaagaaatgaaaaacaactgctcctcctctctctcaaccattatttgcagttagtattcaccaccaccaatcatggttaaaag 19580389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 381 - 493
Target Start/End: Original strand, 11650999 - 11651111
Alignment:
Q  381 tgagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataattaggaaat 480  Q
    |||||||||||||| || || |||||||| |||||| ||||||||||||| || |||||| |||| |  |||||||||||||||||||||||| ||||||    
T  11650999 tgagaaattcttgtttatgaacgaacctaacatatcattcttacaaacaacaatttaaaatatgatatatcattgttttattttaaaataatttggaaat 11651098  T
Q  481 aatttaagaaatg 493  Q
    |||||||||||||    
T  11651099 aatttaagaaatg 11651111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 380 - 474
Target Start/End: Complemental strand, 27073174 - 27073080
Alignment:
Q  380 ttgagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataatta 474  Q
    ||||||||||||||||||||| |||||||| | |||| | ||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||    
T  27073174 ttgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta 27073080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 377 - 474
Target Start/End: Original strand, 33214438 - 33214535
Alignment:
Q  377 tttttgagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataatta 474  Q
    |||| ||||||||||||||||||| |||||||| | |||| | ||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||    
T  33214438 ttttagagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta 33214535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 576 - 647
Target Start/End: Complemental strand, 33214512 - 33214440
Alignment:
Q  576 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctctaa 647  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||    
T  33214512 gacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctaa 33214440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 382 - 474
Target Start/End: Original strand, 36274120 - 36274211
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataatta 474  Q
    |||||||| |||||||||| |||||||| |||||| | ||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||    
T  36274120 gagaaatt-ttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta 36274211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 575 - 644
Target Start/End: Original strand, 36635432 - 36635502
Alignment:
Q  575 tgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctc 644  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||    
T  36635432 tgacgtgtcatgttttaatttgttgtttgtaaaaatgatatgttaggttcgttcctacacaagaatttctc 36635502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 576 - 644
Target Start/End: Original strand, 27073103 - 27073172
Alignment:
Q  576 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctc 644  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||    
T  27073103 gacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 27073172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 575 - 645
Target Start/End: Original strand, 19580504 - 19580575
Alignment:
Q  575 tgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctct 645  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||    
T  19580504 tgacatgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctatacaagaatttctct 19580575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 576 - 645
Target Start/End: Original strand, 33214634 - 33214704
Alignment:
Q  576 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctct 645  Q
    ||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||| ||||||||||    
T  33214634 gacgtgtcatgttttaatttgttgtttgtaaggttgataggttaggttcgttcctacacaagaatttctct 33214704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 576 - 642
Target Start/End: Complemental strand, 10598877 - 10598810
Alignment:
Q  576 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttc 642  Q
    |||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||| |||||||    
T  10598877 gacgtgtcatgttttaatttgttgtttgtaaagatgataggttaggttcgttcctacacaagaatttc 10598810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 584 - 646
Target Start/End: Complemental strand, 27072974 - 27072911
Alignment:
Q  584 atgttttaatttgttgtttgtaagaatgatag-ttaggttcgttcctacacatgaatttctcta 646  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||    
T  27072974 atgttttaatttgttgtttgtaaggatgatagattaggttcgttcctacacaagaatttctcta 27072911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 380 - 459
Target Start/End: Original strand, 33219070 - 33219149
Alignment:
Q  380 ttgagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgtttt 459  Q
    ||||||||||||||||||||| |||||||| | |||| | ||||||||||| ||||||||||||||  ||||||||||||    
T  33219070 ttgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgattcgtcattgtttt 33219149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 582 - 644
Target Start/End: Complemental strand, 33219135 - 33219072
Alignment:
Q  582 tcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctc 644  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||    
T  33219135 tcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 33219072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 576 - 634
Target Start/End: Complemental strand, 36274188 - 36274129
Alignment:
Q  576 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacaca 634  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  36274188 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacaca 36274129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 382 - 459
Target Start/End: Complemental strand, 33214703 - 33214626
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgtttt 459  Q
    ||||||||||||||||||| |||||||| | ||||   ||||||||||| |||||||||||||||||||| |||||||    
T  33214703 gagaaattcttgtgtaggaacgaacctaacctatcaaccttacaaacaacaaattaaaacatgacacgtcgttgtttt 33214626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 384 - 459
Target Start/End: Original strand, 10598810 - 10598885
Alignment:
Q  384 gaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgtttt 459  Q
    ||||||||||||||||| |||||||| | |||| |  |||||||||| |||||||||||||||||||| |||||||    
T  10598810 gaaattcttgtgtaggaacgaacctaacctatcatctttacaaacaacaaattaaaacatgacacgtcgttgtttt 10598885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 576 - 645
Target Start/End: Original strand, 36274320 - 36274390
Alignment:
Q  576 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctct 645  Q
    |||||||||||||||||||||||||||||||  |||||| ||||| |||||||||||| | ||||||||||    
T  36274320 gacgtgtcatgttttaatttgttgtttgtaaagatgataggttagattcgttcctacataagaatttctct 36274390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 583 - 644
Target Start/End: Original strand, 10599000 - 10599062
Alignment:
Q  583 catgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctc 644  Q
    ||||||||||||||||||||||||| |||||| |||||||||||| | ||||| |||||||||    
T  10599000 catgttttaatttgttgtttgtaaggatgatatgttaggttcgtttccacacaagaatttctc 10599062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 382 - 459
Target Start/End: Complemental strand, 36274389 - 36274312
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgtttt 459  Q
    ||||||||||| ||||||| |||| ||| | |||| |  |||||||||| |||||||||||||||||||| |||||||    
T  36274389 gagaaattcttatgtaggaacgaatctaacctatcatctttacaaacaacaaattaaaacatgacacgtcgttgtttt 36274312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 385 - 450
Target Start/End: Original strand, 36635241 - 36635305
Alignment:
Q  385 aaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgt 450  Q
    |||||||||||||||| |||||||| | |||| || |||||||||| |||||||||||||||||||    
T  36635241 aaattcttgtgtaggaacgaacctaac-tatcattgttacaaacaacaaattaaaacatgacacgt 36635305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 582 - 644
Target Start/End: Complemental strand, 11651063 - 11651000
Alignment:
Q  582 tcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctc 644  Q
    |||| |||||| ||||||||||||||||||||| ||||||||||||| || ||| |||||||||    
T  11651063 tcatattttaaattgttgtttgtaagaatgatatgttaggttcgttcataaacaagaatttctc 11651000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 382 - 444
Target Start/End: Complemental strand, 10599062 - 10599000
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatg 444  Q
    ||||||||||||||| | | |||||||| |||||| | ||||||||||| |||||||||||||    
T  10599062 gagaaattcttgtgtggaaacgaacctaacatatcatccttacaaacaacaaattaaaacatg 10599000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 382 - 443
Target Start/End: Original strand, 27072913 - 27072974
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacat 443  Q
    ||||||||||||||||||| ||||||||   |||| | ||||||||||| ||||||||||||    
T  27072913 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaacaaattaaaacat 27072974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 153; Significance: 1e-80; HSPs: 39)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 382 - 644
Target Start/End: Complemental strand, 38086231 - 38085967
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataattaggaaata 481  Q
    |||||||| |||||||||  | |||||| |||||| ||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||  ||||||    
T  38086231 gagaaatttttgtgtagggacaaacctaacatatcattcttacaaacaacaaattaaaatatgatacgtcattgttttattttaaaataattttgaaata 38086132  T
Q  482 atttaagaaatgaaaactaactgctcctcctctctctcaaccattatttgcagt---tattcaccaccagcaatcatggttaaaaggnnnnnnnnntgac 578  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||   |||||||||||| ||||||||||||||| |          |||    
T  38086131 atttaagaaatgaaaaataactgctcctcctctctctcaaccattatttgcagttagtattcaccaccaccaatcatggttaaaa-gaaaataaaacgac 38086033  T
Q  579 gtgtcatgttttaatttgttgtttgtaagaatgatagttaggttcgttcctacacatgaatttctc 644  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  38086032 gtgtcatgttttaatttgttgtttgtaagaatgatagttagtttcgttcctacacaagaatttctc 38085967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 380 - 644
Target Start/End: Original strand, 31470585 - 31470841
Alignment:
Q  380 ttgagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataattaggaaa 479  Q
    ||||||||||||||||||||| |||||||| | |||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31470585 ttgagaaattcttgtgtaggaacgaacctaac-tatcatttttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataattaggaaa 31470683  T
Q  480 taatttaagaaatgaaaactaactgctcctcctctctctcaaccattatttgcagttattcaccaccagcaatcatggttaaaaggnnnnnnnnntgacg 579  Q
    |||||||||||||||||| ||| |||| ||||||||||||||||||| ||     ||||||||||||| ||||||||||||||||          ||| |    
T  31470684 taatttaagaaatgaaaaataattgcttctcctctctctcaaccattgtt-----ttattcaccaccaccaatcatggttaaaag--aaaaaaaatgatg 31470776  T
Q  580 tgtcatgttttaatttgttgtttgtaagaatgatagttaggttcgttcctacacatgaatttctc 644  Q
    ||||||  |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  31470777 tgtcattatttaatttgttgtttgtaagaatgatagttaggttcgttcctacacaaaaatttctc 31470841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 382 - 643
Target Start/End: Complemental strand, 3672087 - 3671822
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataattaggaaata 481  Q
    ||||||||||| || |||| |||| |||  ||||| || ||||||| || ||||||||| || ||||||||||||||||||||||||||||| |||||||    
T  3672087 gagaaattcttatggaggaacgaatctaatatatcatttttacaaataacaaattaaaatataacacgtcattgttttattttaaaataatttggaaata 3671988  T
Q  482 atttaagaaatgaaaactaactgctcctcctctctctcaaccattatttgcagt---tattcaccaccagcaatcatggttaaaag-gnnnnnnnnntga 577  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||  ||   |||||||||||| ||||||||||||||||           |||    
T  3671987 atttaagaaatgaaaaataactgctcctcctctctctcaaccattatttgtggttactattcaccaccatcaatcatggttaaaagaagaaaaaaaatga 3671888  T
Q  578 cgtgtcatgttttaatttgttgtttgtaagaatgatagttaggttcgttcctacacatgaatttct 643  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3671887 tgtgtcatgttttaatttgttgtttgtaagaatgatagttaggttcgttcctacacaagaatttct 3671822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 382 - 464
Target Start/End: Complemental strand, 15332926 - 15332844
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttatttt 464  Q
    ||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  15332926 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaataaattaaaacatgacacgtcattgttttatttt 15332844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 461 - 537
Target Start/End: Complemental strand, 15330586 - 15330509
Alignment:
Q  461 ttttaaaataattaggaaataatttaagaaatgaaaactaa-ctgctcctcctctctctcaaccattatttgcagtta 537  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  15330586 ttttaaaataattaggaaataatttaagaaatgaaaaataaactgctcctcctctctctcaaccattatttgcagtta 15330509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 381 - 474
Target Start/End: Original strand, 42028577 - 42028670
Alignment:
Q  381 tgagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataatta 474  Q
    |||||||||||||||||||| |||||||| | |||| ||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||    
T  42028577 tgagaaattcttgtgtaggaacgaacctaacctatcattcttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta 42028670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 575 - 644
Target Start/End: Complemental strand, 31470656 - 31470587
Alignment:
Q  575 tgacgtgtcatgttttaatttgttgtttgtaagaatgatagttaggttcgttcctacacatgaatttctc 644  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  31470656 tgacgtgtcatgttttaatttgttgtttgtaaaaatgatagttaggttcgttcctacacaagaatttctc 31470587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 576 - 644
Target Start/End: Complemental strand, 42028647 - 42028578
Alignment:
Q  576 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctc 644  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  42028647 gacgtgtcatgttttaatttgttgtttgtaagaatgataggttaggttcgttcctacacaagaatttctc 42028578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 382 - 474
Target Start/End: Complemental strand, 13280099 - 13280007
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataatta 474  Q
    ||||||||||||||||||| |||||||| | |||| | ||||||||||| |||||||||||||| ||||| ||||||| ||||||||||||||    
T  13280099 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgttttcttttaaaataatta 13280007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 575 - 645
Target Start/End: Original strand, 15332856 - 15332927
Alignment:
Q  575 tgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctct 645  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  15332856 tgacgtgtcatgttttaatttattgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctct 15332927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 576 - 645
Target Start/End: Original strand, 36059282 - 36059352
Alignment:
Q  576 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctct 645  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||    
T  36059282 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctct 36059352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 377 - 474
Target Start/End: Original strand, 16115041 - 16115138
Alignment:
Q  377 tttttgagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataatta 474  Q
    ||||||||||||| ||||||| || |||||||| | |||| | ||||||||||| ||||||||| |||||||||| ||||||| ||||||||||||||    
T  16115041 tttttgagaaatttttgtgtaagaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataatta 16115138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 382 - 474
Target Start/End: Complemental strand, 7317899 - 7317807
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataatta 474  Q
    ||||||||||||||||||| |||||||| | |||| | ||||||||||||||||||||||||||||| |  || |||| ||||||||||||||    
T  7317899 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaataaattaaaacatgacacattgtttttttcttttaaaataatta 7317807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 382 - 474
Target Start/End: Complemental strand, 31860349 - 31860257
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataatta 474  Q
    ||||||||||||||||||| |||||||| | || | | ||||||||||| ||||||||||||||||| || ||||||| ||||||||||||||    
T  31860349 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacatgacacatcgttgttttcttttaaaataatta 31860257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 576 - 645
Target Start/End: Original strand, 13280030 - 13280100
Alignment:
Q  576 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctct 645  Q
    ||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||    
T  13280030 gacgtatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctct 13280100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 575 - 644
Target Start/End: Complemental strand, 31860149 - 31860079
Alignment:
Q  575 tgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctc 644  Q
    |||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||| |||||||||    
T  31860149 tgacgtgtcatgttttaatttgttgtttataaggatgataggttaggttcgttcctacacaagaatttctc 31860079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 382 - 451
Target Start/End: Complemental strand, 36059351 - 36059282
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtc 451  Q
    ||||||||||||||||||| |||||||| |||||| | ||||||||||| ||||||||||||||||||||    
T  36059351 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtc 36059282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 576 - 644
Target Start/End: Original strand, 42028773 - 42028842
Alignment:
Q  576 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctc 644  Q
    ||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||    
T  42028773 gacgtatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 42028842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 382 - 474
Target Start/End: Complemental strand, 2059748 - 2059656
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataatta 474  Q
    |||||||| |||||| ||| |||||||| | |||| | ||||||||||| ||||||||| |||||||||| ||||||| ||||||||||||||    
T  2059748 gagaaattattgtgttggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataatta 2059656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 588 - 644
Target Start/End: Complemental strand, 15330505 - 15330449
Alignment:
Q  588 tttaatttgttgtttgtaagaatgatagttaggttcgttcctacacatgaatttctc 644  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  15330505 tttaatttattgtttgtaagaatgatagttaggttcgttcctacacaagaatttctc 15330449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 579 - 645
Target Start/End: Original strand, 7317833 - 7317900
Alignment:
Q  579 gtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctct 645  Q
    ||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||| ||||||||||    
T  7317833 gtgtcatgttttaatttattgtttgtaaggatgataggttaggttcgttcctacacaagaatttctct 7317900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 579 - 645
Target Start/End: Original strand, 31860283 - 31860350
Alignment:
Q  579 gtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctct 645  Q
    ||||||||||||||||||||||||||||| ||| || |||||||||||||||||||| ||||||||||    
T  31860283 gtgtcatgttttaatttgttgtttgtaaggatggtaggttaggttcgttcctacacaagaatttctct 31860350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 380 - 459
Target Start/End: Complemental strand, 42028844 - 42028765
Alignment:
Q  380 ttgagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgtttt 459  Q
    ||||||||||||||||||||| |||||||| | |||| | ||||||||||| |||||||||||||| ||||| |||||||    
T  42028844 ttgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgtttt 42028765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 584 - 644
Target Start/End: Complemental strand, 13279901 - 13279840
Alignment:
Q  584 atgttttaatttgttgtttgtaagaatgatag-ttaggttcgttcctacacatgaatttctc 644  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||    
T  13279901 atgttttaatttgttgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 13279840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 382 - 459
Target Start/End: Original strand, 31860079 - 31860156
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgtttt 459  Q
    ||||||||||||||||||| |||||||| | |||| | |||| |||||| ||||||||||||||||||||||| ||||    
T  31860079 gagaaattcttgtgtaggaacgaacctaacctatcatccttataaacaacaaattaaaacatgacacgtcattatttt 31860156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 576 - 647
Target Start/End: Original strand, 2059679 - 2059751
Alignment:
Q  576 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctctaa 647  Q
    |||||||||| ||||||||||||||||||||| |||||| |||||||||||||| |||||  |||||||||||    
T  2059679 gacgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttccaacacaataatttctctaa 2059751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 383 - 459
Target Start/End: Original strand, 3671822 - 3671897
Alignment:
Q  383 agaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgtttt 459  Q
    |||||||||||||||||| |||||||| | |||| ||||||||||||| ||||||||||||||||| ||||| ||||    
T  3671822 agaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacatcattttttt 3671897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 579 - 644
Target Start/End: Original strand, 16115242 - 16115308
Alignment:
Q  579 gtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctc 644  Q
    ||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||  ||||||||    
T  16115242 gtgtcatattttagtttgttgtttgtaagaatgataggttaggttcgttcctacacaaaaatttctc 16115308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 576 - 644
Target Start/End: Complemental strand, 16115115 - 16115046
Alignment:
Q  576 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctc 644  Q
    |||||||||| ||||||||||||||||||||| |||||| ||||||||||||| ||||||  ||||||||    
T  16115115 gacgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcttacacaaaaatttctc 16115046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 382 - 459
Target Start/End: Complemental strand, 16115308 - 16115231
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgtttt 459  Q
    |||||||| |||||||||| |||||||| | |||| ||||||||||||| ||| ||||| ||||||| ||||||||||    
T  16115308 gagaaatttttgtgtaggaacgaacctaacctatcattcttacaaacaacaaactaaaatatgacacttcattgtttt 16115231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 382 - 451
Target Start/End: Original strand, 38085967 - 38086035
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtc 451  Q
    ||||||||||||||||||| |||| ||| | |||| ||||||||||||| ||||||||||||||||||||    
T  38085967 gagaaattcttgtgtaggaacgaaactaac-tatcattcttacaaacaacaaattaaaacatgacacgtc 38086035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 576 - 634
Target Start/End: Complemental strand, 7317704 - 7317645
Alignment:
Q  576 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacaca 634  Q
    |||||||||||||||| ||||||||| ||||| |||||| ||||||||||||||||||||    
T  7317704 gacgtgtcatgttttagtttgttgttagtaaggatgataggttaggttcgttcctacaca 7317645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 579 - 644
Target Start/End: Complemental strand, 2059556 - 2059490
Alignment:
Q  579 gtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctc 644  Q
    ||||||| ||||| ||||||||||||||| |||||| ||||||||||||||||| || |||||||||    
T  2059556 gtgtcatattttagtttgttgtttgtaaggatgataggttaggttcgttcctacccaagaatttctc 2059490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 575 - 644
Target Start/End: Original strand, 38086161 - 38086231
Alignment:
Q  575 tgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctc 644  Q
    |||||| |||| |||||||||||||||||||||||||||| |||||||| || ||||||||  ||||||||    
T  38086161 tgacgtatcatattttaatttgttgtttgtaagaatgatatgttaggtttgtccctacacaaaaatttctc 38086231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 382 - 459
Target Start/End: Original strand, 2059490 - 2059567
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgtttt 459  Q
    |||||||||||| |||||| |||||||| | |||| | ||||||||||| ||| ||||| ||||||| ||||||||||    
T  2059490 gagaaattcttgggtaggaacgaacctaacctatcatccttacaaacaacaaactaaaatatgacacttcattgtttt 2059567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 382 - 439
Target Start/End: Original strand, 15330449 - 15330505
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaa 439  Q
    ||||||||||||||||||| |||||||| | |||| ||||||||||||||||||||||    
T  15330449 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaataaattaaa 15330505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 380 - 443
Target Start/End: Original strand, 13279838 - 13279901
Alignment:
Q  380 ttgagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacat 443  Q
    ||||||||||||||||||||| ||||||||   |||| | ||||||||||| ||||||||||||    
T  13279838 ttgagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaacaaattaaaacat 13279901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 382 - 459
Target Start/End: Original strand, 7317635 - 7317712
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgtttt 459  Q
    |||||| | |||||||||| |||||||| | |||| | ||||| ||||| ||| |||||||||||||||| |||||||    
T  7317635 gagaaacttttgtgtaggaacgaacctaacctatcatccttactaacaacaaactaaaacatgacacgtcgttgtttt 7317712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 382 - 459
Target Start/End: Complemental strand, 31470841 - 31470765
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgtttt 459  Q
    |||||||| |||||||||| |||||||| | |||| ||||||||||||| ||||||||  ||||||| ||||| ||||    
T  31470841 gagaaatttttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaataatgacacatcattttttt 31470765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 108; Significance: 8e-54; HSPs: 2)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 453 - 646
Target Start/End: Complemental strand, 16044 - 15845
Alignment:
Q  453 ttgttttattttaaaataattaggaaataatttaagaaatgaaaactaactgctcctcctctctctcaaccattatttgcagt---tattcaccaccagc 549  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||   |||||||||| | |    
T  16044 ttgttttattttaaaataattaggaaataatttaagaaatgaaaaataactgctactcctctctctcaaccattatttgcggttaatattcaccactacc 15945  T
Q  550 aatcatggttaaaag--gnnnnnnnnntgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctcta 646  Q
    |||||||||||||||            | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  15944 aatcatggttaaaagaaaaaaaaataataacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctcta 15845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 382 - 464
Target Start/End: Original strand, 15847 - 15929
Alignment:
Q  382 gagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttatttt 464  Q
    ||||||||||||||||||| |||||||| |||||| ||||||||||||| ||||||||||||||||||| ||| |||| ||||    
T  15847 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgttattattttttttt 15929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 55; Significance: 3e-22; HSPs: 4)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 380 - 474
Target Start/End: Original strand, 11624 - 11718
Alignment:
Q  380 ttgagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataatta 474  Q
    ||||| ||||||||||||||| |||||||| | |||| | ||||||||||| ||||||||| ||||||| |||||||||| ||||||||||||||    
T  11624 ttgagtaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacatcattgttttcttttaaaataatta 11718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 576 - 644
Target Start/End: Original strand, 11822 - 11891
Alignment:
Q  576 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctc 644  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||    
T  11822 gacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 11891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 381 - 459
Target Start/End: Complemental strand, 11892 - 11814
Alignment:
Q  381 tgagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgtttt 459  Q
    |||||||||||||||||||| |||||||| | |||| | ||||||||||| |||||||||||||||||||| |||||||    
T  11892 tgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 11814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 579 - 640
Target Start/End: Complemental strand, 11692 - 11630
Alignment:
Q  579 gtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatt 640  Q
    ||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||| |||||    
T  11692 gtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatt 11630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 51; Significance: 8e-20; HSPs: 4)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 381 - 459
Target Start/End: Original strand, 37445 - 37523
Alignment:
Q  381 tgagaaattcttgtgtaggatcgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgtttt 459  Q
    |||||||||||||||||||| |||||||||| || | | ||||||||||| |||||||||||||||||||| |||||||    
T  37445 tgagaaattcttgtgtaggaacgaacctagcctaccatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 37523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 576 - 644
Target Start/End: Complemental strand, 37515 - 37446
Alignment:
Q  576 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacatgaatttctc 644  Q
    |||||||||||||||||||||||||||||||| ||| || | |||||||||||||||||| |||||||||    
T  37515 gacgtgtcatgttttaatttgttgtttgtaaggatggtaggctaggttcgttcctacacaagaatttctc 37446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 402 - 474
Target Start/End: Complemental strand, 37690 - 37618
Alignment:
Q  402 cgaacctagcatatccttcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataatta 474  Q
    |||||||| | |||| | ||||||||||| |||||||||||||  ||||| ||||||| ||||||||||||||    
T  37690 cgaacctaacctatcatccttacaaacaacaaattaaaacatgctacgtcgttgttttcttttaaaataatta 37618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 583 - 625
Target Start/End: Original strand, 37648 - 37691
Alignment:
Q  583 catgttttaatttgttgtttgtaagaatgata-gttaggttcgt 625  Q
    ||||||||||||||||||||||||| |||||| |||||||||||    
T  37648 catgttttaatttgttgtttgtaaggatgataggttaggttcgt 37691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 584 - 633
Target Start/End: Original strand, 17556 - 17605
Alignment:
Q  584 atgttttaatttgttgtttgtaagaatgatagttaggttcgttcctacac 633  Q
    |||||||||||| |||||||||| ||||||| ||| ||||||||||||||    
T  17556 atgttttaatttattgtttgtaaaaatgatacttacgttcgttcctacac 17605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 584 - 645
Target Start/End: Complemental strand, 17530 - 17469
Alignment:
Q  584 atgttttaatttgttgtttgtaagaatgatagttaggttcgttcctacacatgaatttctct 645  Q
    ||||||||||||  ||||||||| ||||||| |||  |||||||||| ||| ||||||||||    
T  17530 atgttttaatttactgtttgtaaaaatgatacttacattcgttcctatacaagaatttctct 17469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University