View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4793_high_13 (Length: 340)
Name: NF4793_high_13
Description: NF4793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4793_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 23324234 - 23323910
Alignment:
| Q |
1 |
taaaaatcagctgcaaaaactaatgaacaacctaagtccaatccatttccaagacaagttcatttctggattccaacaagaaaatcctctaatgtttcac |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23324234 |
taaaaatcagctgcaaaaactaatgaacaacccaagtccaatccatttccaagacaagttcatttctggattccaacaagaaaatcctctaatgtttcac |
23324135 |
T |
|
| Q |
101 |
tcttcaaaccctagcattacagaatctagcagtctctcacacggttctccaccggtcgattcattctttgaaactgtttcttcacctgagttttcaaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23324134 |
tcttcaaaccctagcattacagaatctagcagtctctcacacggttctccaccggtcgattcattctttgaaactgtttcttcacctgagttttcaaaca |
23324035 |
T |
|
| Q |
201 |
ccaacatggcctatctcaaccatcatcaaaatcaacacttcaattatttgagggtgcccagtgaaaagccagtttctgatcatggaactgttgctataga |
300 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23324034 |
ccaacatggcctatctcaatcatcatcaaaatcaacacttcaattatttgagggtgcccagtgaaaagccagtttctgatcatggaactgttgctataga |
23323935 |
T |
|
| Q |
301 |
ttctattgctaaagaaaaagttttg |
325 |
Q |
| |
|
||||||||||||||||||||||||| |
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| T |
23323934 |
ttctattgctaaagaaaaagttttg |
23323910 |
T |
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