View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4793_high_17 (Length: 324)
Name: NF4793_high_17
Description: NF4793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4793_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 134 - 313
Target Start/End: Original strand, 22617104 - 22617283
Alignment:
| Q |
134 |
cgtgtcagataaattcaattaaatacaactatacattaccaaaatcaaacttcatataaatataataatcaaactatatagagtaaattcaacaaaatta |
233 |
Q |
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| T |
22617104 |
cgtgtcagataaattcaattaaatacaactataaattaccaaaatcaaacttcatataaatataataatcaaactatattgagtaaattcaacaaaatta |
22617203 |
T |
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| Q |
234 |
atttcatattactccgaaatttacgaaccagatatgcgattcccatctaccagtcctgcgataaaacgtaacacctctgt |
313 |
Q |
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| T |
22617204 |
atttcatattactccgaaatttacgaaccagatatgcgattcccatctaccagtcctgcgataaaacgtaacacctctgt |
22617283 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 256 - 313
Target Start/End: Complemental strand, 39643967 - 39643910
Alignment:
| Q |
256 |
acgaaccagatatgcgattcccatctaccagtcctgcgataaaacgtaacacctctgt |
313 |
Q |
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| T |
39643967 |
acgaaccagatatgtgattcccatcttccagttctccgataaaacgtgactcctctgt |
39643910 |
T |
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