View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4793_high_19 (Length: 305)
Name: NF4793_high_19
Description: NF4793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4793_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 293
Target Start/End: Complemental strand, 15688815 - 15688540
Alignment:
| Q |
18 |
ttgagttgttgccaaagaaagaaactcaaacatggtgaacacaaacctagaagaaatcaaacaagaccatgaacatgtttatgatagacacaaagagtta |
117 |
Q |
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| T |
15688815 |
ttgagttgttgtcaaagaaagaaactcaaacatggtgaacacaaacctagaagaaatcaaacaagaccatgaacatgtttatgatagacagaaagagtta |
15688716 |
T |
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| Q |
118 |
aagcttcttgatgaatcaaaagaaggtgtaaaaggacttgtagatgctggtttgaccaaagtcccaaagatttttattcatgataagattcatgaacata |
217 |
Q |
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| T |
15688715 |
aagctgcttgatgaatcaaaagaaggtgtaaaaggacttgtagatgctggtttgaccaaagtcccaaagattttcattcatgataagattcatgaacata |
15688616 |
T |
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| Q |
218 |
acaacaaacaaaccagttcaaccaatcttagtattccaatcatagattttggacctttatttaccaacacaggttc |
293 |
Q |
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| T |
15688615 |
acaacaaacaaaccagttcaaccaatcttagtattccaatcatagattttggacctttatttaccaacacaagttc |
15688540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 48 - 293
Target Start/End: Complemental strand, 15682445 - 15682200
Alignment:
| Q |
48 |
catggtgaacacaaacctagaagaaatcaaacaagaccatgaacatgtttatgatagacacaaagagttaaagcttcttgatgaatcaaaagaaggtgta |
147 |
Q |
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| T |
15682445 |
catggtgaacacaaatctagaagaaatcaaacaagaacatgaacatgtttatgatagacagaaagagttaaagcttcttgatgaatcaaaagaaggtgta |
15682346 |
T |
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| Q |
148 |
aaaggacttgtagatgctggtttgaccaaagtcccaaagatttttattcatgataagattcatgaacataacaacaaacaaaccagttcaaccaatctta |
247 |
Q |
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| T |
15682345 |
aaaggacttgtagatgctggtttgaccaaagtcccaaagattttcattcatgataagattcatgaacataacaacaaacaaaccagttcaaccaatctta |
15682246 |
T |
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| Q |
248 |
gtattccaatcatagattttggacctttatttaccaacacaggttc |
293 |
Q |
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| T |
15682245 |
gtattccaatcatagattttggtcctttatttaccaacacaagttc |
15682200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 23 - 283
Target Start/End: Complemental strand, 15684514 - 15684254
Alignment:
| Q |
23 |
ttgttgccaaagaaagaaactcaaacatggtgaacacaaacctagaagaaatcaaacaagaccatgaacatgtttatgatagacacaaagagttaaagct |
122 |
Q |
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|||||| | ||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
15684514 |
ttgttgtccaagaaagaaactcaaacatggggaacacaaatctagaagaaatcaaacaagaccgtgaacatgtttatgatagacacaaagagttaatgct |
15684415 |
T |
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| Q |
123 |
tcttgatgaatcaaaagaaggtgtaaaaggacttgtagatgctggtttgaccaaagtcccaaagatttttattcatgataagattcatgaacataacaac |
222 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
15684414 |
tcttgatgaatcaaaagaaggtgtaaaaggacttgttgatgctggtttgaccaaattcccaaagattttcattcatgataaggttcatgaacataacaac |
15684315 |
T |
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| Q |
223 |
aaacaaaccagttcaaccaatcttagtattccaatcatagattttggacctttatttacca |
283 |
Q |
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| T |
15684314 |
aaacaaaccagttcaaccaatcttagtattccaatcatagactttggacctttatttacca |
15684254 |
T |
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