View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4793_high_20 (Length: 302)
Name: NF4793_high_20
Description: NF4793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4793_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 142; Significance: 2e-74; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 150 - 295
Target Start/End: Complemental strand, 45121999 - 45121854
Alignment:
| Q |
150 |
ttataagcccaacattttttacccttgatcattcttatatacattgcatgttatatgacattgtaattaaacgtattaaaatataaaagataataaaccc |
249 |
Q |
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| T |
45121999 |
ttataagcccaacattttttacccttgatcattcttatatacattgcatgttatatgacattgtaattaaacgtattaaaatataaaagataataaaccc |
45121900 |
T |
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| Q |
250 |
gacatatttcaagaacaattgaattaaattacataactacttctca |
295 |
Q |
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| T |
45121899 |
gacatatttcaagaacaattgaattaaattacataactgcttctca |
45121854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 5 - 112
Target Start/End: Complemental strand, 45122273 - 45122166
Alignment:
| Q |
5 |
agtgagaagaacttagtattgatttataatatcaacactcgggcacttgaatattgctcaaaaagaatgttagtgtagagattttattaccgagtaaaaa |
104 |
Q |
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| T |
45122273 |
agtgagaagaacttagcattgatttataatatcaacactcggccacttgaatattgctcaaaaagaatgttagtgtagagattttattactgagtaaaaa |
45122174 |
T |
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| Q |
105 |
atatgtat |
112 |
Q |
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| T |
45122173 |
atatgtat |
45122166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 98 - 155
Target Start/End: Complemental strand, 45122085 - 45122028
Alignment:
| Q |
98 |
gtaaaaaatatgtattcagtgtctgatgcaaaaactatttatactatattttttataa |
155 |
Q |
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| T |
45122085 |
gtaaaaaatatgtattcagtgtctgatgcaaaaactatttatactatattttttataa |
45122028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 180 - 245
Target Start/End: Complemental strand, 45122693 - 45122628
Alignment:
| Q |
180 |
attcttatatacattgcatgttatatgacattgtaattaaacgtattaaaatataaaagataataa |
245 |
Q |
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| T |
45122693 |
attcttatatacatcgcatgttatatgacaatgcaattaaatgtattgaaatataaaagataataa |
45122628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 231
Target Start/End: Complemental strand, 45122750 - 45122692
Alignment:
| Q |
173 |
cttgatcattcttatatacattgcatgttatatgacattgtaattaaacgtattaaaat |
231 |
Q |
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| T |
45122750 |
cttgatcattcttatatactttgcatgttttatgacattgcaattaaatgtattgaaat |
45122692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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