View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4793_high_26 (Length: 242)
Name: NF4793_high_26
Description: NF4793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4793_high_26 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 10799163 - 10799387
Alignment:
| Q |
19 |
gaaatggcagcatcgatgattcccttgatgtcgatgcaaataaagagacataatcaatgattgtatgtcgaaagtagttaagaacaaagatgacaaaaat |
118 |
Q |
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| T |
10799163 |
gaaatggcagaatcgatgattcctttgatgtcgatgcaaataaagagatataatcaacgattgtatgtcgaaagtagttaagaacggaaatgacaaaaat |
10799262 |
T |
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| Q |
119 |
gacgtcactgagagtttagaagaagatgaattggatcagggtattttgaa-ttttttgaaggtgatggagaagacgacgtgtttggaggttgataaggcg |
217 |
Q |
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| T |
10799263 |
gacgtcactgagagtttagaagaagatgaattggatttgggtattttgaatttttttgaaggtgatggagaagacgacgtgtttggaggttgataatgcg |
10799362 |
T |
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| Q |
218 |
aagtgtgtgtcttatgggagaaatt |
242 |
Q |
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| T |
10799363 |
aagtgtgtgtcttatgggagaaatt |
10799387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 10808326 - 10808548
Alignment:
| Q |
19 |
gaaatggcagcatcgatgattcccttgatgtcgatgcaaataaagagacataatcaatgattgtatgtcgaaagtagttaagaacaaagatgacaaaaat |
118 |
Q |
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|||||||||| ||||||||||||| | | ||||||||||| ||| |||||||||||| ||||||||||| ||||||||||||| || ||||||||||||| |
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| T |
10808326 |
gaaatggcagaatcgatgattcccctaacgtcgatgcaaagaaaaagacataatcaacgattgtatgtcaaaagtagttaagagcagagatgacaaaaat |
10808425 |
T |
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| Q |
119 |
gacgtcactgagagtttagaagaagatgaattggatcagggtattttgaattttttgaaggtgatggagaagacgacgtgtttggaggttgataaggcga |
218 |
Q |
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| T |
10808426 |
gacgacactgagagtttagaagaagatgaattggatctgggta-tttgaattttttgaaggtgatggagaagacgatgtgtttggaggttgataatgcaa |
10808524 |
T |
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| Q |
219 |
agtgtgtgtcttatgggagaaatt |
242 |
Q |
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| T |
10808525 |
agtgtgtgtcttatgggagaaatt |
10808548 |
T |
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