View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4793_high_3 (Length: 606)
Name: NF4793_high_3
Description: NF4793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4793_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 526; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 18 - 596
Target Start/End: Original strand, 11544358 - 11544940
Alignment:
| Q |
18 |
caaagaacgtgtgagagatctttaggctcttatgttgaagcaatacctgttgaagaaactataggaggttaatcacactttgttttctaaatttaccctt |
117 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11544358 |
caaagaatgtgtgagagatctttaggctcttatgttgaagcaatacctgttgaagaaactataggaggttaatcacactttgttttctaaatttaccctt |
11544457 |
T |
|
| Q |
118 |
ccaaaaatctctattcatctattttccttgtaaattttatatttagctaaaataattaatattgtattgctaattattgttcagtgatccaaacacttga |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11544458 |
ccaaaaatctctattcatctattttccttgtaaattttatatttatctaaaataattaatattgtattgctaattattgttcagtgatccaaacacttga |
11544557 |
T |
|
| Q |
218 |
agggaggaatagtgtgataaagcttgctcagagaatggtcaaaatgttttgtgaaagtttaacaatgcctggtcaattgaaattgaaccatttaactctt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
11544558 |
agggaggaatagtgtgataaagcttgctcagagaatggtcaaaatgttttgtgaaagtttaacaatgcctggtcaattggaattgaaccatttaactctt |
11544657 |
T |
|
| Q |
318 |
gctagcattggtggtgttagagtctcttttcgcagcaccatggacgatgatacaagccagccaaatggcactattgttactgctgctaccaccctttggc |
417 |
Q |
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||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
11544658 |
gctagcattggtggtattagagtctcttttcgcagcaccacggacgatgatacaagccagccaaatggcactattgttactgcggctaccaccctttggc |
11544757 |
T |
|
| Q |
418 |
tccctctgcctgctcaaaaagtttttgaattcctcaaagatcctacaaagcgatcacaggtaacatcttatgctttataattgagagtatactgtagctt |
517 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
11544758 |
tccctctgcctgctctgaaagtttttgaattcctcaaagatcctacaaagcgatcacaggtaacatcttttgctttataattgagagtaaactgtagctt |
11544857 |
T |
|
| Q |
518 |
tggtccttgaatatgtcaaacgttatc----tagtctctgaattaatcaagattacgaaaaaatatactcgaatgtgtctctg |
596 |
Q |
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| T |
11544858 |
tggtccttgaatatgtcaaacgttatctatatagtctctgaattaatcaagattacgaaaaaatatactcgaatgtgtctctg |
11544940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 18 - 546
Target Start/End: Original strand, 11557779 - 11558302
Alignment:
| Q |
18 |
caaagaacgtgtgagagatctttaggctcttatgttgaagcaatacctgttgaagaaactataggaggttaatcacactttgttttctaaatttaccctt |
117 |
Q |
| |
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||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
11557779 |
caaagaatgtgcgagagatctttaggctctaatgttgaagcaatacctgttgaagaaactataggaggttaatc-----ttgtcttctaaatttaccctt |
11557873 |
T |
|
| Q |
118 |
ccaaaaatctctattcatctattttccttgtaaattttatatttagctaaaataattaatattgtattgctaattattgttcagtgatccaaacacttga |
217 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
11557874 |
ccaaatatctctattcatctattttccttgtaaattttatatttagcgaatttaattaatattatattgctaattattgttcagtgatccaaacacttga |
11557973 |
T |
|
| Q |
218 |
agggaggaatagtgtgataaagcttgctcagagaatggtcaaaatgttttgtgaaagtttaacaatgcctggtcaattgaaattgaaccatttaactctt |
317 |
Q |
| |
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|||||||||||||||||||||||||||| | |||||||| || |||||||||||| | |||||||||||||||||| || |||||||||||||||||||| |
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| T |
11557974 |
agggaggaatagtgtgataaagcttgctgatagaatggtgaagatgttttgtgaatgcttaacaatgcctggtcaagtggaattgaaccatttaactctt |
11558073 |
T |
|
| Q |
318 |
gctagcattggtggtgttagagtctcttttcgcagcaccatggacgatgatacaagccagccaaatggcactattgttactgctgctaccaccctttggc |
417 |
Q |
| |
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| |||||||||||| |||||||||||| ||||| |||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
11558074 |
gatagcattggtggggttagagtctctattcgcgcaaccaccgacgatgatgcaagccagccaaatggcactgttgttactgctgctaccaccctttggc |
11558173 |
T |
|
| Q |
418 |
tccctctgcctgctcaaaaagtttttgaattcctcaaagatcctacaaagcgatcacaggtaacatcttatgctttataattgagagtatactgtagctt |
517 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| | || |||||||||||||||| | ||| | || |
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| T |
11558174 |
tccctctgcctgctcagaaagtttttgaattcctcaaagatcctacaaaacgatcacaggtaacatgctttgttttataattgagagtaaattgtggttt |
11558273 |
T |
|
| Q |
518 |
tggtccttgaatatgtcaaacgttatcta |
546 |
Q |
| |
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||||||||| ||||||||||||||||||| |
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| T |
11558274 |
tggtccttggatatgtcaaacgttatcta |
11558302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 184; Significance: 3e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 202 - 476
Target Start/End: Complemental strand, 12064468 - 12064193
Alignment:
| Q |
202 |
tgatccaaacacttgaagggaggaatagtgtgataaagcttgctcagagaatggtcaaaatgttttgtgaaagtttaacaatgcctggtcaattgaaatt |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| | |||||||||||||||||| || |||| |
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| T |
12064468 |
tgatccaaacacttgaagggaggaatagtgtgataaagcttgctgatagaatggtcaaaatgttttgtgaatgcttaacaatgcctggtcaagtggaatt |
12064369 |
T |
|
| Q |
302 |
gaaccatttaactcttgctagcattggtggtg-ttagagtctcttttcgcagcaccatggacgatgatacaagccagccaaatggcactattgttactgc |
400 |
Q |
| |
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||||||||||||||||| |||||||||||| | ||||||||||| ||||| |||| ||| |||||||||||||||||||||||||| |||| ||||| |
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| T |
12064368 |
gaaccatttaactcttgatagcattggtggggtttagagtctctcttcgcgataccaccgacaatgatacaagccagccaaatggcactgttgtaactgc |
12064269 |
T |
|
| Q |
401 |
tgctaccaccctttggctccctctgcctgctcaaaaagtttttgaattcctcaaagatcctacaaagcgatcacag |
476 |
Q |
| |
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||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
12064268 |
tgctaccactctttggctccctctgcctgctcagaaagtttttgaattgctcaaagatcctacaaaacgatcacag |
12064193 |
T |
|
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