View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4793_high_30 (Length: 238)
Name: NF4793_high_30
Description: NF4793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4793_high_30 |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 40113422 - 40113201
Alignment:
| Q |
17 |
acttcttaggcattgagttaattcccacaagcaaaggattgttcttatctcaacataaatttattagaaaaattcttgagaaatttgatatggatggtgc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40113422 |
acttcttaggcattgagttaattcccacaagcaaaggattgttcttatctcaacataaatttattagagaaattcttgagaaatttgatatggatggtgc |
40113323 |
T |
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| Q |
117 |
aaaaccagcgcccacacctttgtcaccaacagctatcctcaccattcatgatggcaccaccgccactaaccccacacactacagaaaaattcttggctcc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40113322 |
aaaaccagcgcccacacctttgtcaccaacagctatcctcaccattcatgatggcaccaccgccactaaccccacacactacagaaaaattcttggctcc |
40113223 |
T |
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| Q |
217 |
cttcagtatctcaacctgacac |
238 |
Q |
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|||||||||||||| ||||||| |
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| T |
40113222 |
cttcagtatctcaatctgacac |
40113201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 6406811 - 6407032
Alignment:
| Q |
17 |
acttcttaggcattgagttaattcccacaagcaaaggattgttcttatctcaacataaatttattagaaaaattcttgagaaatttgatatggatggtgc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6406811 |
acttcttaggcattgagttaattcccacaagcaaaggattgttcttatctcaacataaatttattagagaaattcttgagaaatttgatatggatggtgc |
6406910 |
T |
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| Q |
117 |
aaaaccagcgcccacacctttgtcaccaacagctatcctcaccattcatgatggcaccaccgccactaaccccacacactacagaaaaattcttggctcc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
6406911 |
aaaaccagcgcccacacctttgtcaccaacagctatcctcaccattcatgatggcaccaccgccactaactccacacactacagaaaaattcttggctcc |
6407010 |
T |
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| Q |
217 |
cttcagtatctcaacctgacac |
238 |
Q |
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|||||||||||||||||||||| |
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| T |
6407011 |
cttcagtatctcaacctgacac |
6407032 |
T |
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Back To:
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