View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4793_high_33 (Length: 217)

Name: NF4793_high_33
Description: NF4793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4793_high_33
NF4793_high_33
[»] chr5 (1 HSPs)
chr5 (18-208)||(37283724-37283922)
[»] chr3 (1 HSPs)
chr3 (129-175)||(51380952-51380998)
[»] chr2 (4 HSPs)
chr2 (129-175)||(12037300-12037346)
chr2 (129-175)||(27249856-27249902)
chr2 (129-176)||(42013371-42013418)
chr2 (129-175)||(29699598-29699644)
[»] chr4 (1 HSPs)
chr4 (129-175)||(21512011-21512057)
[»] chr1 (2 HSPs)
chr1 (129-175)||(69006-69052)
chr1 (129-176)||(46878156-46878203)
[»] chr6 (2 HSPs)
chr6 (129-176)||(3445461-3445508)
chr6 (129-176)||(33629356-33629403)
[»] chr8 (3 HSPs)
chr8 (129-175)||(42456943-42456989)
chr8 (135-176)||(5920882-5920923)
chr8 (129-166)||(16677140-16677177)
[»] chr7 (1 HSPs)
chr7 (129-161)||(2729911-2729943)


Alignment Details
Target: chr5 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 37283922 - 37283724
Alignment:
Q  18 atagggaggcccccgaatgaataaatggcaaaacatgtggactgaattgggctttgagtttcggcttagagtcatttgttgctagcaggacaa----ttc 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||    
T  37283922 atagggaggcccccgaatgaataaatggcaaaacatgtggactgaattgggctttgagtttcggcttagagtcatttgttgctagcaggacaaggagttc 37283823  T
Q  114 cggcttagaaaaatg----tcacacttcactcaatgctaggaaacacgagtagtttatcaatataatttattttaacgggtgggagataactgatgatg 208  Q
    |||||||||||||||    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||| |||||    
T  37283822 cggcttagaaaaatgttgttcacacttcactcaatgctaggaaacacgagtaatttatcaatataatttattttaacgggcggcagataactgttgatg 37283724  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 51380952 - 51380998
Alignment:
Q  129 tcacacttcactcaatgctaggaaacacgagtagtttatcaatataa 175  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||    
T  51380952 tcacacttcactcaatgctaggaaacactagtaatttatcaatataa 51380998  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 12037300 - 12037346
Alignment:
Q  129 tcacacttcactcaatgctaggaaacacgagtagtttatcaatataa 175  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||    
T  12037300 tcacacttcactcaatgctaggaaacaccagtaatttatcaatataa 12037346  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 27249902 - 27249856
Alignment:
Q  129 tcacacttcactcaatgctaggaaacacgagtagtttatcaatataa 175  Q
    ||||||||||||||||| |||||||||| |||| |||||||||||||    
T  27249902 tcacacttcactcaatgttaggaaacactagtaatttatcaatataa 27249856  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 176
Target Start/End: Original strand, 42013371 - 42013418
Alignment:
Q  129 tcacacttcactcaatgctaggaaacacgagtagtttatcaatataat 176  Q
    |||| ||||||||||||||||||||||| |||| ||||||||| ||||    
T  42013371 tcacgcttcactcaatgctaggaaacaccagtaatttatcaatttaat 42013418  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 29699644 - 29699598
Alignment:
Q  129 tcacacttcactcaatgctaggaaacacgagtagtttatcaatataa 175  Q
    ||||||||||||||||| |||||||||| |||| |||| ||||||||    
T  29699644 tcacacttcactcaatgttaggaaacactagtaatttaccaatataa 29699598  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 21512011 - 21512057
Alignment:
Q  129 tcacacttcactcaatgctaggaaacacgagtagtttatcaatataa 175  Q
    |||||||||||||||||||||||||||| | || |||||||||||||    
T  21512011 tcacacttcactcaatgctaggaaacactactaatttatcaatataa 21512057  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 69052 - 69006
Alignment:
Q  129 tcacacttcactcaatgctaggaaacacgagtagtttatcaatataa 175  Q
    ||||||||||||||||||||||| |||| |||| |||||||||||||    
T  69052 tcacacttcactcaatgctaggacacactagtaatttatcaatataa 69006  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 176
Target Start/End: Original strand, 46878156 - 46878203
Alignment:
Q  129 tcacacttcactcaatgctaggaaacacgagtagtttatcaatataat 176  Q
    |||||||||||||||||||||||||||| | || ||||| ||||||||    
T  46878156 tcacacttcactcaatgctaggaaacaccaataatttataaatataat 46878203  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 176
Target Start/End: Complemental strand, 3445508 - 3445461
Alignment:
Q  129 tcacacttcactcaatgctaggaaacacgagtagtttatcaatataat 176  Q
    ||||||||||| ||||||||||||| || |||| ||||||||||||||    
T  3445508 tcacacttcacacaatgctaggaaatactagtaatttatcaatataat 3445461  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 176
Target Start/End: Original strand, 33629356 - 33629403
Alignment:
Q  129 tcacacttcactcaatgctaggaaacacgagtagtttatcaatataat 176  Q
    |||||||||||||||||||||||||||  |||| |||| |||||||||    
T  33629356 tcacacttcactcaatgctaggaaacaatagtaatttaccaatataat 33629403  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 42456989 - 42456943
Alignment:
Q  129 tcacacttcactcaatgctaggaaacacgagtagtttatcaatataa 175  Q
    |||||||||||| ||||||||||||||| |||| |||| ||||||||    
T  42456989 tcacacttcacttaatgctaggaaacaccagtaatttaccaatataa 42456943  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 135 - 176
Target Start/End: Complemental strand, 5920923 - 5920882
Alignment:
Q  135 ttcactcaatgctaggaaacacgagtagtttatcaatataat 176  Q
    |||||||||||||||||||||| |||| |||| |||||||||    
T  5920923 ttcactcaatgctaggaaacaccagtactttaccaatataat 5920882  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 166
Target Start/End: Complemental strand, 16677177 - 16677140
Alignment:
Q  129 tcacacttcactcaatgctaggaaacacgagtagttta 166  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  16677177 tcacacttcactcaatgctaggaaacaccagtaattta 16677140  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 161
Target Start/End: Complemental strand, 2729943 - 2729911
Alignment:
Q  129 tcacacttcactcaatgctaggaaacacgagta 161  Q
    |||||||||||||||||||||||||||| ||||    
T  2729943 tcacacttcactcaatgctaggaaacaccagta 2729911  T

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