View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4793_high_6 (Length: 410)

Name: NF4793_high_6
Description: NF4793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4793_high_6
NF4793_high_6
[»] chr3 (4 HSPs)
chr3 (297-400)||(25766634-25766737)
chr3 (302-398)||(30053059-30053155)
chr3 (229-289)||(25766778-25766838)
chr3 (84-132)||(28145022-28145070)
[»] chr7 (7 HSPs)
chr7 (297-400)||(4822630-4822733)
chr7 (219-293)||(4822770-4822844)
chr7 (297-346)||(332943-332992)
chr7 (302-349)||(4427893-4427940)
chr7 (235-293)||(4427793-4427851)
chr7 (97-125)||(21978910-21978938)
chr7 (100-132)||(28195392-28195424)
[»] scaffold0011 (2 HSPs)
scaffold0011 (297-391)||(134159-134253)
scaffold0011 (217-293)||(134046-134122)
[»] scaffold1948 (2 HSPs)
scaffold1948 (297-400)||(654-757)
scaffold1948 (217-293)||(794-870)
[»] chr8 (4 HSPs)
chr8 (311-400)||(3597150-3597240)
chr8 (297-400)||(19928266-19928369)
chr8 (302-392)||(22664319-22664409)
chr8 (230-293)||(22664451-22664514)
[»] scaffold0176 (2 HSPs)
scaffold0176 (307-394)||(10394-10481)
scaffold0176 (230-286)||(10535-10591)
[»] scaffold1260 (2 HSPs)
scaffold1260 (297-391)||(1572-1666)
scaffold1260 (230-293)||(1472-1535)
[»] scaffold0607 (2 HSPs)
scaffold0607 (302-394)||(8049-8141)
scaffold0607 (235-293)||(8183-8241)
[»] chr6 (3 HSPs)
chr6 (297-389)||(16878520-16878612)
chr6 (316-400)||(21626295-21626379)
chr6 (231-293)||(16878649-16878711)
[»] scaffold0414 (2 HSPs)
scaffold0414 (302-394)||(5963-6055)
scaffold0414 (234-293)||(5862-5921)
[»] scaffold0249 (1 HSPs)
scaffold0249 (297-391)||(16529-16623)
[»] scaffold0015 (2 HSPs)
scaffold0015 (303-391)||(165076-165164)
scaffold0015 (234-293)||(164974-165033)
[»] scaffold0056 (2 HSPs)
scaffold0056 (302-398)||(33607-33703)
scaffold0056 (230-293)||(33502-33565)
[»] chr1 (2 HSPs)
chr1 (84-132)||(35812120-35812168)
chr1 (235-293)||(21133782-21133840)
[»] scaffold0007 (1 HSPs)
scaffold0007 (316-385)||(144304-144373)


Alignment Details
Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 297 - 400
Target Start/End: Complemental strand, 25766737 - 25766634
Alignment:
Q  297 tccattgaaatggagcttttgcaaaagaatgcagaacttgaaagggagaacaagcaattgagaaaggaagttctcaatcagaagctactcttgcttgagt 396  Q
    |||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25766737 tccactgaaatggagttgttgcaaaagaatgcagaacttgaaagggagaacaagcaattgagaaaggaagttctcaatcagaagctactcttgcttgagt 25766638  T
Q  397 ataa 400  Q
    ||||    
T  25766637 ataa 25766634  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 302 - 398
Target Start/End: Original strand, 30053059 - 30053155
Alignment:
Q  302 tgaaatggagcttttgcaaaagaatgcagaacttgaaagggagaacaagcaattgagaaaggaagttctcaatcagaagctactcttgcttgagtat 398  Q
    |||| |||| |||||||||| ||||||| ||||||| ||||||||||||| |||||||||||||||  |  |||||||||||||||||||| |||||    
T  30053059 tgaactggaacttttgcaaaggaatgcataacttgagagggagaacaagctattgagaaaggaagtgttagatcagaagctactcttgcttaagtat 30053155  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 229 - 289
Target Start/End: Complemental strand, 25766838 - 25766778
Alignment:
Q  229 tatgtctaagagaaagaaatccaacagatctcattcctgctggagtgcatccaagagattt 289  Q
    ||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||    
T  25766838 tatgtctaagagaaagaaatcaaacaaatttcattcctgctggagtgcatccaagagattt 25766778  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 28145022 - 28145070
Alignment:
Q  84 ttgaaaaattaagctctctcatgttataatatataacaaaactcatgat 132  Q
    ||||| |||| ||| ||||||||||||| |||||| |||||||||||||    
T  28145022 ttgaagaatttagccctctcatgttatattatatagcaaaactcatgat 28145070  T

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Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 297 - 400
Target Start/End: Complemental strand, 4822733 - 4822630
Alignment:
Q  297 tccattgaaatggagcttttgcaaaagaatgcagaacttgaaagggagaacaagcaattgagaaaggaagttctcaatcagaagctactcttgcttgagt 396  Q
    |||| |||||||||||| ||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  4822733 tccactgaaatggagctattgcaaaggaatgcaaaacttgaaagggagaacaagcgattgagaaaggaagttctcaatcagaagctacttttgcttgagt 4822634  T
Q  397 ataa 400  Q
    ||||    
T  4822633 ataa 4822630  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 219 - 293
Target Start/End: Complemental strand, 4822844 - 4822770
Alignment:
Q  219 caaactcccttatgtctaagagaaagaaatccaacagatctcattcctgctggagtgcatccaagagatttggat 293  Q
    ||||||| | |||||||||||||||||||||||||| || ||||||||| |||||||||||||||||| ||||||    
T  4822844 caaactctcctatgtctaagagaaagaaatccaacaaatttcattcctgttggagtgcatccaagagaattggat 4822770  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 297 - 346
Target Start/End: Complemental strand, 332992 - 332943
Alignment:
Q  297 tccattgaaatggagcttttgcaaaagaatgcagaacttgaaagggagaa 346  Q
    |||| |||| |||||||| |||||| ||||||||||||||||||||||||    
T  332992 tccactgaattggagcttatgcaaaggaatgcagaacttgaaagggagaa 332943  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 302 - 349
Target Start/End: Original strand, 4427893 - 4427940
Alignment:
Q  302 tgaaatggagcttttgcaaaagaatgcagaacttgaaagggagaacaa 349  Q
    ||||||||||||  |||||| ||||||||||||||| |||||||||||    
T  4427893 tgaaatggagctgctgcaaaggaatgcagaacttgagagggagaacaa 4427940  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 293
Target Start/End: Original strand, 4427793 - 4427851
Alignment:
Q  235 taagagaaagaaatccaacagatctcattcctgctggagtgcatccaagagatttggat 293  Q
    |||||| |||||||||||||||| |||| || |  |||||||||||||| |||||||||    
T  4427793 taagaggaagaaatccaacagatttcataccagaaggagtgcatccaagggatttggat 4427851  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 125
Target Start/End: Complemental strand, 21978938 - 21978910
Alignment:
Q  97 ctctctcatgttataatatataacaaaac 125  Q
    |||||||||||||||||||||||||||||    
T  21978938 ctctctcatgttataatatataacaaaac 21978910  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 132
Target Start/End: Original strand, 28195392 - 28195424
Alignment:
Q  100 tctcatgttataatatataacaaaactcatgat 132  Q
    |||||||||||| ||||||||||||||||||||    
T  28195392 tctcatgttatattatataacaaaactcatgat 28195424  T

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Target: scaffold0011 (Bit Score: 79; Significance: 8e-37; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 297 - 391
Target Start/End: Original strand, 134159 - 134253
Alignment:
Q  297 tccattgaaatggagcttttgcaaaagaatgcagaacttgaaagggagaacaagcaattgagaaaggaagttctcaatcagaagctactcttgct 391  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  134159 tccactgaaatggagcttttgcaaaggaatgcagaacttgaaagggagaacaagcaattgagaaaggaagttctagatcagaagctactcttgct 134253  T

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Target: scaffold0011; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 217 - 293
Target Start/End: Original strand, 134046 - 134122
Alignment:
Q  217 tgcaaactcccttatgtctaagagaaagaaatccaacagatctcattcctgctggagtgcatccaagagatttggat 293  Q
    ||||| |||| | |||||||||||||||||||||||||||| ||||||| || | ||||||||||||||| ||||||    
T  134046 tgcaatctccttcatgtctaagagaaagaaatccaacagatttcattccagcagaagtgcatccaagagaattggat 134122  T

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Target: scaffold1948 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: scaffold1948
Description:

Target: scaffold1948; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 297 - 400
Target Start/End: Complemental strand, 757 - 654
Alignment:
Q  297 tccattgaaatggagcttttgcaaaagaatgcagaacttgaaagggagaacaagcaattgagaaaggaagttctcaatcagaagctactcttgcttgagt 396  Q
    ||||||||||||||||| ||||||| ||||| |||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |    
T  757 tccattgaaatggagctattgcaaaggaatgtagaacttggaagggagaacaagcaactgagaaaggaagttctcaatcataagctactcttgcttgaat 658  T
Q  397 ataa 400  Q
    ||||    
T  657 ataa 654  T

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Target: scaffold1948; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 217 - 293
Target Start/End: Complemental strand, 870 - 794
Alignment:
Q  217 tgcaaactcccttatgtctaagagaaagaaatccaacagatctcattcctgctggagtgcatccaagagatttggat 293  Q
    ||||||||||  || ||||||||||||||||||||||| || ||||||||   ||||| ||||||||||| ||||||    
T  870 tgcaaactcctctaagtctaagagaaagaaatccaacatatttcattcctatgggagttcatccaagagaattggat 794  T

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Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 311 - 400
Target Start/End: Original strand, 3597150 - 3597240
Alignment:
Q  311 gcttttgcaaaagaa-tgcagaacttgaaagggagaacaagcaattgagaaaggaagttctcaatcagaagctactcttgcttgagtataa 400  Q
    ||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3597150 gcttttgcaaaagaaatggagaacttgaaagggagaacaagcagttgagaaaggaagttctcaatcagaagctactcttgcttgagtataa 3597240  T

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Target: chr8; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 297 - 400
Target Start/End: Complemental strand, 19928369 - 19928266
Alignment:
Q  297 tccattgaaatggagcttttgcaaaagaatgcagaacttgaaagggagaacaagcaattgagaaaggaagttctcaatcagaagctactcttgcttgagt 396  Q
    |||| |||||||||||| ||||||| ||||| ||||||||| ||||||| ||||||| |||||||||||||||||||||| |||||||| |||||||| |    
T  19928369 tccactgaaatggagctattgcaaaggaatgaagaacttgagagggagaccaagcaactgagaaaggaagttctcaatcaaaagctacttttgcttgaat 19928270  T
Q  397 ataa 400  Q
    ||||    
T  19928269 ataa 19928266  T

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Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 302 - 392
Target Start/End: Complemental strand, 22664409 - 22664319
Alignment:
Q  302 tgaaatggagcttttgcaaaagaatgcagaacttgaaagggagaacaagcaattgagaaaggaagttctcaatcagaagctactcttgctt 392  Q
    |||| ||||||||||||||| ||||| ||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||| |||||    
T  22664409 tgaattggagcttttgcaaaggaatgtagaacttgaaagggaaaacaagcaactgagaaaggaacttctcaatcagaagctactcatgctt 22664319  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 230 - 293
Target Start/End: Complemental strand, 22664514 - 22664451
Alignment:
Q  230 atgtctaagagaaagaaatccaacagatctcattcctgctggagtgcatccaagagatttggat 293  Q
    |||||||||| ||||||||||||||||| ||||||| |  ||||||||||||||||| ||||||    
T  22664514 atgtctaagaaaaagaaatccaacagatttcattccagtaggagtgcatccaagagaattggat 22664451  T

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Target: scaffold0176 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 307 - 394
Target Start/End: Complemental strand, 10481 - 10394
Alignment:
Q  307 tggagcttttgcaaaagaatgcagaacttgaaagggagaacaagcaattgagaaaggaagttctcaatcagaagctactcttgcttga 394  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| |||||||    
T  10481 tggagcttttgcaaaggaatgcagaacttgaaagggagaacaagcaactgagaaaggaacttctcaattagaagctactcatgcttga 10394  T

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Target: scaffold0176; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 230 - 286
Target Start/End: Complemental strand, 10591 - 10535
Alignment:
Q  230 atgtctaagagaaagaaatccaacagatctcattcctgctggagtgcatccaagaga 286  Q
    ||||||||||||||||||||||| |||| ||||||| |  |||||||||||||||||    
T  10591 atgtctaagagaaagaaatccaatagatttcattccagtaggagtgcatccaagaga 10535  T

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Target: scaffold1260 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: scaffold1260
Description:

Target: scaffold1260; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 297 - 391
Target Start/End: Original strand, 1572 - 1666
Alignment:
Q  297 tccattgaaatggagcttttgcaaaagaatgcagaacttgaaagggagaacaagcaattgagaaaggaagttctcaatcagaagctactcttgct 391  Q
    |||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||| |  |||||||||||||||||||    
T  1572 tccactgaaatggagcttttgcaaaggaatgaagaacttgaaagggagaacaagcaattgataaaggaagttttagatcagaagctactcttgct 1666  T

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Target: scaffold1260; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 230 - 293
Target Start/End: Original strand, 1472 - 1535
Alignment:
Q  230 atgtctaagagaaagaaatccaacagatctcattcctgctggagtgcatccaagagatttggat 293  Q
    ||||||||||||||||||||||| |||| ||||||| || ||||||||||||||||| ||||||    
T  1472 atgtctaagagaaagaaatccaatagatttcattccagcaggagtgcatccaagagaattggat 1535  T

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Target: scaffold0607 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: scaffold0607
Description:

Target: scaffold0607; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 302 - 394
Target Start/End: Complemental strand, 8141 - 8049
Alignment:
Q  302 tgaaatggagcttttgcaaaagaatgcagaacttgaaagggagaacaagcaattgagaaaggaagttctcaatcagaagctactcttgcttga 394  Q
    |||| ||||||||||| ||| |||||||||||||||||| | ||||||||| |||||||||||| |||||||||||||||||||| |||||||    
T  8141 tgaattggagcttttggaaaggaatgcagaacttgaaagagggaacaagcagttgagaaaggaacttctcaatcagaagctactcatgcttga 8049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0607; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 235 - 293
Target Start/End: Complemental strand, 8241 - 8183
Alignment:
Q  235 taagagaaagaaatccaacagatctcattcctgctggagtgcatccaagagatttggat 293  Q
    ||||||||||||||| ||||||| ||||||| |  ||||||||||||||||||||||||    
T  8241 taagagaaagaaatcgaacagatttcattccagtaggagtgcatccaagagatttggat 8183  T

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Target: chr6 (Bit Score: 61; Significance: 5e-26; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 297 - 389
Target Start/End: Complemental strand, 16878612 - 16878520
Alignment:
Q  297 tccattgaaatggagcttttgcaaaagaatgcagaacttgaaagggagaacaagcaattgagaaaggaagttctcaatcagaagctactcttg 389  Q
    |||| |||||||||| ||||||||| ||||||||||||||||||||||||||| || || ||||||||||||||  |||||||||||||||||    
T  16878612 tccactgaaatggagtttttgcaaaggaatgcagaacttgaaagggagaacaaacatttaagaaaggaagttctagatcagaagctactcttg 16878520  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 400
Target Start/End: Complemental strand, 21626379 - 21626295
Alignment:
Q  316 tgcaaaagaatgcagaacttgaaagggagaacaagcaattgagaaaggaagttctcaatcagaagctactcttgcttgagtataa 400  Q
    |||||| ||||||||||||||||| ||| |||||| |  | ||||||||||||||  | ||||| ||||| ||||||||||||||    
T  21626379 tgcaaaggaatgcagaacttgaaaaggaaaacaagaagctaagaaaggaagttcttgaacagaacctactattgcttgagtataa 21626295  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 293
Target Start/End: Complemental strand, 16878711 - 16878649
Alignment:
Q  231 tgtctaagagaaagaaatccaacagatctcattcctgctggagtgcatccaagagatttggat 293  Q
    |||||||||||| |||||||||||||| |||||||    ||||||||||||||||| ||||||    
T  16878711 tgtctaagagaaggaaatccaacagatttcattccaataggagtgcatccaagagaattggat 16878649  T

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Target: scaffold0414 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold0414
Description:

Target: scaffold0414; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 302 - 394
Target Start/End: Original strand, 5963 - 6055
Alignment:
Q  302 tgaaatggagcttttgcaaaagaatgcagaacttgaaagggagaacaagcaattgagaaaggaagttctcaatcagaagctactcttgcttga 394  Q
    |||| ||||||||||||||| |||| |||||||||||||||| ||||||||  ||||||||||| |||||| ||||||||||||| |||||||    
T  5963 tgaattggagcttttgcaaaggaatacagaacttgaaagggaaaacaagcagctgagaaaggaacttctcattcagaagctactcatgcttga 6055  T

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Target: scaffold0414; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 234 - 293
Target Start/End: Original strand, 5862 - 5921
Alignment:
Q  234 ctaagagaaagaaatccaacagatctcattcctgctggagtgcatccaagagatttggat 293  Q
    |||||||||||||||||||||||| ||||||| |  |||||||||||||| || ||||||    
T  5862 ctaagagaaagaaatccaacagatttcattccagtaggagtgcatccaagggaattggat 5921  T

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Target: scaffold0249 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 297 - 391
Target Start/End: Original strand, 16529 - 16623
Alignment:
Q  297 tccattgaaatggagcttttgcaaaagaatgcagaacttgaaagggagaacaagcaattgagaaaggaagttctcaatcagaagctactcttgct 391  Q
    |||| |||| |||| |||||||||| ||||||| ||||||||||||| ||||||||| |||||||||||||  |  |||||||||||||||||||    
T  16529 tccactgaattggaacttttgcaaaggaatgcataacttgaaagggataacaagcaactgagaaaggaagtgttagatcagaagctactcttgct 16623  T

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Target: scaffold0015 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 303 - 391
Target Start/End: Original strand, 165076 - 165164
Alignment:
Q  303 gaaatggagcttttgcaaaagaatgcagaacttgaaagggagaacaagcaattgagaaaggaagttctcaatcagaagctactcttgct 391  Q
    ||||| |||||| |||||| ||||||||||||||||||||| || ||||| |||| ||||||| ||||  |||||||| | ||||||||    
T  165076 gaaatagagcttctgcaaaggaatgcagaacttgaaagggaaaagaagcagttgaaaaaggaacttctacatcagaagatgctcttgct 165164  T

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Target: scaffold0015; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 234 - 293
Target Start/End: Original strand, 164974 - 165033
Alignment:
Q  234 ctaagagaaagaaatccaacagatctcattcctgctggagtgcatccaagagatttggat 293  Q
    ||||||||||||||||| |||||| ||||||| |   |||||||||||||||| ||||||    
T  164974 ctaagagaaagaaatcccacagatttcattccagtaagagtgcatccaagagaattggat 165033  T

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Target: scaffold0056 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 398
Target Start/End: Original strand, 33607 - 33703
Alignment:
Q  302 tgaaatggagcttttgcaaaagaatgcagaacttgaaagggagaacaagcaattgagaaaggaagttctcaatcagaagctactcttgcttgagtat 398  Q
    |||| |||| ||| |||||| ||||||||||||||| ||||||||||||   || ||||| |||||  |  |||||||||||||||||||| |||||    
T  33607 tgaactggaacttctgcaaaggaatgcagaacttgagagggagaacaagtctttaagaaaagaagtgttagatcagaagctactcttgcttaagtat 33703  T

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Target: scaffold0056; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 230 - 293
Target Start/End: Original strand, 33502 - 33565
Alignment:
Q  230 atgtctaagagaaagaaatccaacagatctcattcctgctggagtgcatccaagagatttggat 293  Q
    ||||||||||| |||||||||||| ||| ||||||| |  |||||||||||||| |||||||||    
T  33502 atgtctaagaggaagaaatccaactgatttcattccagaaggagtgcatccaagggatttggat 33565  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 84 - 132
Target Start/End: Complemental strand, 35812168 - 35812120
Alignment:
Q  84 ttgaaaaattaagctctctcatgttataatatataacaaaactcatgat 132  Q
    ||||| |||| ||||||||||||||||| ||||||||||||||||||||    
T  35812168 ttgaagaattcagctctctcatgttatattatataacaaaactcatgat 35812120  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 293
Target Start/End: Original strand, 21133782 - 21133840
Alignment:
Q  235 taagagaaagaaatccaacagatctcattcctgctggagtgcatccaagagatttggat 293  Q
    |||||| |||||||||||||||| ||||||| |  |||||||||||||| |||||||||    
T  21133782 taagaggaagaaatccaacagatttcattccagaaggagtgcatccaagggatttggat 21133840  T

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Target: scaffold0007 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 316 - 385
Target Start/End: Complemental strand, 144373 - 144304
Alignment:
Q  316 tgcaaaagaatgcagaacttgaaagggagaacaagcaattgagaaaggaagttctcaatcagaagctact 385  Q
    |||||||||||||||||||||||| ||| |||||| |  | ||||||||||||||  | |||||||||||    
T  144373 tgcaaaagaatgcagaacttgaaaaggaaaacaagaagcttagaaaggaagttcttgaacagaagctact 144304  T

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