View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4793_high_7 (Length: 396)

Name: NF4793_high_7
Description: NF4793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4793_high_7
NF4793_high_7
[»] chr5 (6 HSPs)
chr5 (1-396)||(29280966-29281351)
chr5 (199-269)||(17258869-17258939)
chr5 (220-277)||(13604827-13604884)
chr5 (149-207)||(31030198-31030260)
chr5 (239-276)||(32890607-32890644)
chr5 (158-207)||(41016132-41016181)
[»] chr8 (14 HSPs)
chr8 (298-380)||(6471400-6471482)
chr8 (199-274)||(43368681-43368756)
chr8 (175-258)||(20672742-20672823)
chr8 (220-258)||(3600735-3600773)
chr8 (220-258)||(14339602-14339640)
chr8 (199-277)||(14949880-14949958)
chr8 (220-257)||(4281581-4281618)
chr8 (220-269)||(30389134-30389183)
chr8 (223-267)||(779049-779093)
chr8 (198-258)||(3254238-3254298)
chr8 (175-207)||(7878554-7878586)
chr8 (221-269)||(10358614-10358662)
chr8 (232-276)||(10690035-10690079)
chr8 (175-203)||(29056063-29056091)
[»] chr1 (21 HSPs)
chr1 (220-277)||(10199386-10199443)
chr1 (175-267)||(601031-601122)
chr1 (199-275)||(25479595-25479671)
chr1 (198-269)||(3924637-3924708)
chr1 (242-276)||(11584546-11584580)
chr1 (224-258)||(47917275-47917309)
chr1 (220-269)||(4576840-4576889)
chr1 (224-269)||(38266446-38266491)
chr1 (162-202)||(44115978-44116019)
chr1 (175-207)||(4200199-4200231)
chr1 (222-258)||(5276330-5276366)
chr1 (222-258)||(5886991-5887027)
chr1 (224-276)||(6262059-6262111)
chr1 (133-177)||(7120072-7120116)
chr1 (149-177)||(7137105-7137133)
chr1 (175-207)||(7218142-7218174)
chr1 (175-207)||(25006102-25006134)
chr1 (175-207)||(27738248-27738280)
chr1 (221-269)||(29635383-29635431)
chr1 (175-207)||(37272654-37272686)
chr1 (175-207)||(44032067-44032099)
[»] chr4 (10 HSPs)
chr4 (199-277)||(2996587-2996665)
chr4 (219-269)||(17223022-17223072)
chr4 (224-261)||(8469371-8469408)
chr4 (220-257)||(28300297-28300334)
chr4 (175-207)||(13949912-13949944)
chr4 (175-207)||(18630650-18630682)
chr4 (175-207)||(21952931-21952963)
chr4 (220-256)||(24747354-24747390)
chr4 (175-207)||(25434528-25434560)
chr4 (220-276)||(28614787-28614843)
[»] chr7 (10 HSPs)
chr7 (220-277)||(27708775-27708832)
chr7 (220-276)||(7244715-7244771)
chr7 (222-269)||(34035954-34036002)
chr7 (175-258)||(39539778-39539861)
chr7 (220-279)||(46082071-46082130)
chr7 (224-261)||(9423588-9423625)
chr7 (220-269)||(15740397-15740446)
chr7 (221-265)||(21247962-21248006)
chr7 (175-207)||(23918927-23918959)
chr7 (220-248)||(43648275-43648303)
[»] chr3 (14 HSPs)
chr3 (189-258)||(36200100-36200169)
chr3 (148-207)||(20669561-20669621)
chr3 (220-258)||(3044256-3044294)
chr3 (220-258)||(5391914-5391952)
chr3 (220-258)||(25925777-25925815)
chr3 (220-258)||(39602207-39602245)
chr3 (220-258)||(52440659-52440697)
chr3 (220-257)||(33883748-33883785)
chr3 (224-277)||(37273173-37273226)
chr3 (224-269)||(43116427-43116472)
chr3 (220-269)||(47513688-47513737)
chr3 (221-266)||(52619039-52619084)
chr3 (205-257)||(5166343-5166395)
chr3 (175-207)||(33405235-33405267)
[»] chr6 (18 HSPs)
chr6 (220-276)||(9027613-9027669)
chr6 (205-257)||(30604916-30604968)
chr6 (181-277)||(32577964-32578060)
chr6 (220-258)||(6647422-6647460)
chr6 (224-278)||(22743520-22743574)
chr6 (220-258)||(31624125-31624163)
chr6 (220-269)||(34882406-34882456)
chr6 (220-269)||(1575930-1575979)
chr6 (224-269)||(4080955-4081000)
chr6 (220-269)||(20368166-20368215)
chr6 (133-207)||(22742288-22742368)
chr6 (220-261)||(29296289-29296330)
chr6 (133-174)||(31337945-31337986)
chr6 (224-269)||(33887869-33887914)
chr6 (175-207)||(281916-281948)
chr6 (224-276)||(7931705-7931757)
chr6 (175-207)||(21959698-21959730)
chr6 (175-207)||(29274297-29274329)
[»] chr2 (5 HSPs)
chr2 (224-274)||(10285899-10285949)
chr2 (224-258)||(29316772-29316806)
chr2 (224-285)||(43065420-43065481)
chr2 (175-207)||(11513868-11513900)
chr2 (175-207)||(33944575-33944607)


Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 29280966 - 29281351
Alignment:
Q  1 accggacaagaccctaatatgcatgtctcttgataataatttgagaaaatgaattaatcaactgtaattttacatgtgtcaatatcggacactgcacata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||    
T  29280966 accggacaagaccctaatatgcatgtctcttgataataatttgagaaaatgaattaatcaactttaattttacatatgtcaatgtcggacactgcacata 29281065  T
Q  101 ctattaatcagatatatcggtgctacagaggtgcttattgtatacgtacttatatataaactatttttataacaaaaataaagtcaatttgttttcatat 200  Q
    ||||||||||||  ||| ||||||           ||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  29281066 ctattaatcagaagtattggtgct-----------tatcgtataagtacttatatataaactatttttataacaaaaataaagtcaacttgttttcatat 29281154  T
Q  201 aagctatcctcaagagtgcatgaaaataagttgaaaagaacttatgaacatgtcataaattattttc-atgagctctcataagtagactttatattagat 299  Q
    || ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||    
T  29281155 aaactatcctcaagatcgcatgaaaataagttgaaaagaacttatgaacatgtcataaattattttcaatgagctctcagaagtagactttatattggat 29281254  T
Q  300 tgataaattttaattagtcaatctaaacatgtccttaatccataatgggaatttgttggtgtttcaggttagtggaccagagacagtggaacttaat 396  Q
    |||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29281255 tgataaattttaatcagtcaatctaaacatgttcttaatccacaatgggaatttgttggtgtttcaggttagtggaccagagacagtggaacttaat 29281351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 269
Target Start/End: Complemental strand, 17258939 - 17258869
Alignment:
Q  199 ataagctatcctcaagagtgcatgaaaataagttgaaaagaacttatgaacatgtcataaattattttcat 269  Q
    |||| ||||||| |||||   ||||||||||| |||||| | ||||||||||||||||||  |||||||||    
T  17258939 ataaactatcctgaagagcttatgaaaataagctgaaaacagcttatgaacatgtcataagctattttcat 17258869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 277
Target Start/End: Complemental strand, 13604884 - 13604827
Alignment:
Q  220 atgaaaataagttgaaaagaacttatgaacatgtcataaattattttcatgagctctc 277  Q
    |||||||||||||||||| ||| |||| |||||||||||  | ||||||| |||||||    
T  13604884 atgaaaataagttgaaaacaacgtatggacatgtcataagctgttttcataagctctc 13604827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 31030260 - 31030198
Alignment:
Q  149 cttatatataaactatttttataacaaa----aataaagtcaatttgttttcatataagctat 207  Q
    ||||| ||||| ||||||||||||||||    ||||||||||| ||||| |||||||||||||    
T  31030260 cttatgtataagctatttttataacaaatttaaataaagtcaagttgttatcatataagctat 31030198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 276
Target Start/End: Complemental strand, 32890644 - 32890607
Alignment:
Q  239 aacttatgaacatgtcataaattattttcatgagctct 276  Q
    ||||||| ||||||||||||||||||||||| ||||||    
T  32890644 aacttataaacatgtcataaattattttcattagctct 32890607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 207
Target Start/End: Original strand, 41016132 - 41016181
Alignment:
Q  158 aaactatttttataacaaaaataaagtcaatttgttttcatataagctat 207  Q
    ||||||||| |||| |||||||||| ||||  ||||||||||||||||||    
T  41016132 aaactatttctatagcaaaaataaattcaaactgttttcatataagctat 41016181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 298 - 380
Target Start/End: Complemental strand, 6471482 - 6471400
Alignment:
Q  298 attgataaattttaattagtcaatctaaacatgtccttaatccataatgggaatttgttggtgtttcaggttagtggaccaga 380  Q
    |||||||||||| ||||||||||| |||| |||||||||||| | ||||||||| ||||||||||||||||||||||||||||    
T  6471482 attgataaatttcaattagtcaatataaatatgtccttaatctacaatgggaatatgttggtgtttcaggttagtggaccaga 6471400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 274
Target Start/End: Complemental strand, 43368756 - 43368681
Alignment:
Q  199 ataagctatcctcaagagtgcatgaaaataagttgaaaagaacttatgaacatgtcataaattattttcatgagct 274  Q
    ||||||| |||| |||||| ||||||||||||||||||| | || ||||||||||||||| || ||||||| ||||    
T  43368756 ataagctgtcctaaagagttcatgaaaataagttgaaaatagctaatgaacatgtcataagttgttttcataagct 43368681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 258
Target Start/End: Original strand, 20672742 - 20672823
Alignment:
Q  175 aaaataaagtcaatttgttttcatataagctatcctcaagagtgcatgaaaataagttgaaaagaacttatgaacatgtcataa 258  Q
    |||||||||||||  ||||||  |||||||||||||  ||||   ||||||||||| |||||| | ||||||||||||||||||    
T  20672742 aaaataaagtcaaactgtttt--tataagctatcctggagagcttatgaaaataagctgaaaacagcttatgaacatgtcataa 20672823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 258
Target Start/End: Complemental strand, 3600773 - 3600735
Alignment:
Q  220 atgaaaataagttgaaaagaacttatgaacatgtcataa 258  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  3600773 atgaaaataagttgaaaacaacttatggacatgtcataa 3600735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 258
Target Start/End: Complemental strand, 14339640 - 14339602
Alignment:
Q  220 atgaaaataagttgaaaagaacttatgaacatgtcataa 258  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  14339640 atgaaaataagttgaaaacaacttatggacatgtcataa 14339602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 277
Target Start/End: Original strand, 14949880 - 14949958
Alignment:
Q  199 ataagctatcctcaagagtgcatgaaaataagttgaaaagaacttatgaacatgtcataaattattttcatgagctctc 277  Q
    |||||||||||| |||||   ||  ||||||| |||||| | |||||| ||||||||||| |||||||||| |||||||    
T  14949880 ataagctatcctaaagagattatagaaataagctgaaaacagcttatggacatgtcataagttattttcataagctctc 14949958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 257
Target Start/End: Original strand, 4281581 - 4281618
Alignment:
Q  220 atgaaaataagttgaaaagaacttatgaacatgtcata 257  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  4281581 atgaaaataagatgaaaacaacttatgaacatgtcata 4281618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 269
Target Start/End: Original strand, 30389134 - 30389183
Alignment:
Q  220 atgaaaataagttgaaaagaacttatgaacatgtcataaattattttcat 269  Q
    ||||||||||| |||||| |||||||||||||||||| |  |||||||||    
T  30389134 atgaaaataagctgaaaacaacttatgaacatgtcattagctattttcat 30389183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 267
Target Start/End: Complemental strand, 779093 - 779049
Alignment:
Q  223 aaaataagttgaaaagaacttatgaacatgtcataaattattttc 267  Q
    |||||||| |||||| |||||||||||||||||||| || |||||    
T  779093 aaaataagatgaaaacaacttatgaacatgtcataagttgttttc 779049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 258
Target Start/End: Original strand, 3254238 - 3254298
Alignment:
Q  198 tataagctatcctcaagagtgcatgaaaataagttgaaaagaacttatgaacatgtcataa 258  Q
    |||||||||||||  |||||| ||  ||||||| |||||| | ||||||||||||||||||    
T  3254238 tataagctatcctatagagtgtatagaaataagctgaaaacagcttatgaacatgtcataa 3254298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 7878586 - 7878554
Alignment:
Q  175 aaaataaagtcaatttgttttcatataagctat 207  Q
    ||||||||||||| |||||||||||||||||||    
T  7878586 aaaataaagtcaaattgttttcatataagctat 7878554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 269
Target Start/End: Original strand, 10358614 - 10358662
Alignment:
Q  221 tgaaaataagttgaaaagaacttatgaacatgtcataaattattttcat 269  Q
    ||||||||| | |||||  ||||||||||||||||||| ||||||||||    
T  10358614 tgaaaataaatcgaaaacgacttatgaacatgtcataagttattttcat 10358662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 276
Target Start/End: Original strand, 10690035 - 10690079
Alignment:
Q  232 tgaaaagaacttatgaacatgtcataaattattttcatgagctct 276  Q
    |||||| ||||||||||||| |||||| |||||| ||||||||||    
T  10690035 tgaaaataacttatgaacatatcataagttatttacatgagctct 10690079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 203
Target Start/End: Complemental strand, 29056091 - 29056063
Alignment:
Q  175 aaaataaagtcaatttgttttcatataag 203  Q
    |||||||||||||||||||||||||||||    
T  29056091 aaaataaagtcaatttgttttcatataag 29056063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 277
Target Start/End: Complemental strand, 10199443 - 10199386
Alignment:
Q  220 atgaaaataagttgaaaagaacttatgaacatgtcataaattattttcatgagctctc 277  Q
    ||||||||||| |||||| ||||||||||||||||||||  |||||||||||| ||||    
T  10199443 atgaaaataagctgaaaacaacttatgaacatgtcataagctattttcatgagttctc 10199386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 175 - 267
Target Start/End: Original strand, 601031 - 601122
Alignment:
Q  175 aaaataaagtcaatttgttttcatataagctatcctcaagagtgcatgaaaataagttgaaaagaacttatgaacatgtcataaattattttc 267  Q
    ||||||||||||| ||||||||||||| ||||||||  |||||  ||||||||||| |||||| | ||||  |||||||||||| || |||||    
T  601031 aaaataaagtcaagttgttttcatatatgctatcctggagagtttatgaaaataagctgaaaatagctta-caacatgtcataagttgttttc 601122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 275
Target Start/End: Original strand, 25479595 - 25479671
Alignment:
Q  199 ataagctatcctcaagagtgcatgaaaataagttgaaaagaacttatgaacatgtcataaattattttcatgagctc 275  Q
    ||||||||||||  ||||   ||||||||||| |||||| |||| |||||||||||||||  ||||||||| |||||    
T  25479595 ataagctatcctagagagcttatgaaaataagctgaaaacaactaatgaacatgtcataatctattttcataagctc 25479671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 198 - 269
Target Start/End: Original strand, 3924637 - 3924708
Alignment:
Q  198 tataagctatcctcaagagtgcatgaaaataagttgaaaagaacttatgaacatgtcataaattattttcat 269  Q
    ||||||||||||| ||||||  ||| |||||||  ||||| ||||||| ||||| ||||||||| |||||||    
T  3924637 tataagctatcctgaagagtttatggaaataagccgaaaacaacttataaacatttcataaattgttttcat 3924708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 276
Target Start/End: Original strand, 11584546 - 11584580
Alignment:
Q  242 ttatgaacatgtcataaattattttcatgagctct 276  Q
    |||||||||||||||||||||||||||| ||||||    
T  11584546 ttatgaacatgtcataaattattttcataagctct 11584580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 258
Target Start/End: Original strand, 47917275 - 47917309
Alignment:
Q  224 aaataagttgaaaagaacttatgaacatgtcataa 258  Q
    |||||||||||||| ||||||||||||||||||||    
T  47917275 aaataagttgaaaacaacttatgaacatgtcataa 47917309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 269
Target Start/End: Original strand, 4576840 - 4576889
Alignment:
Q  220 atgaaaataagttgaaaagaacttatgaacatgtcataaattattttcat 269  Q
    ||||||||||| |||| | ||||||| ||||||||||||| |||||||||    
T  4576840 atgaaaataagctgaacacaacttataaacatgtcataaactattttcat 4576889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 269
Target Start/End: Complemental strand, 38266491 - 38266446
Alignment:
Q  224 aaataagttgaaaagaacttatgaacatgtcataaattattttcat 269  Q
    |||||||||||||| || ||||||||||||| ||| ||||||||||    
T  38266491 aaataagttgaaaacaaattatgaacatgtcgtaagttattttcat 38266446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 44116019 - 44115978
Alignment:
Q  162 tatttttataacaaaa-ataaagtcaatttgttttcatataa 202  Q
    |||||||||||||||| |||||||||| ||||||||||||||    
T  44116019 tatttttataacaaaagataaagtcaaattgttttcatataa 44115978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 4200199 - 4200231
Alignment:
Q  175 aaaataaagtcaatttgttttcatataagctat 207  Q
    ||||||||||||| |||||||||||||||||||    
T  4200199 aaaataaagtcaagttgttttcatataagctat 4200231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 258
Target Start/End: Original strand, 5276330 - 5276366
Alignment:
Q  222 gaaaataagttgaaaagaacttatgaacatgtcataa 258  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  5276330 gaaaataacttgaaaacaacttatgaacatgtcataa 5276366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 258
Target Start/End: Complemental strand, 5887027 - 5886991
Alignment:
Q  222 gaaaataagttgaaaagaacttatgaacatgtcataa 258  Q
    ||||||||| |||||| ||||||||||||||||||||    
T  5887027 gaaaataagctgaaaacaacttatgaacatgtcataa 5886991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 276
Target Start/End: Original strand, 6262059 - 6262111
Alignment:
Q  224 aaataagttgaaaagaacttatgaacatgtcataaattattttcatgagctct 276  Q
    |||||||||||||| | |||||||||||||||||| || || |||| ||||||    
T  6262059 aaataagttgaaaatagcttatgaacatgtcataagttgttctcataagctct 6262111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 177
Target Start/End: Original strand, 7120072 - 7120116
Alignment:
Q  133 gcttattgtatacgtacttatatataaactatttttataacaaaa 177  Q
    |||||| ||||| || |||||||||||||||||| ||||||||||    
T  7120072 gcttatggtataagtgcttatatataaactatttatataacaaaa 7120116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 177
Target Start/End: Complemental strand, 7137133 - 7137105
Alignment:
Q  149 cttatatataaactatttttataacaaaa 177  Q
    |||||||||||||||||||||||||||||    
T  7137133 cttatatataaactatttttataacaaaa 7137105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 7218174 - 7218142
Alignment:
Q  175 aaaataaagtcaatttgttttcatataagctat 207  Q
    ||||||||||||| |||||||||||||||||||    
T  7218174 aaaataaagtcaaattgttttcatataagctat 7218142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 25006134 - 25006102
Alignment:
Q  175 aaaataaagtcaatttgttttcatataagctat 207  Q
    ||||||||||||| |||||||||||||||||||    
T  25006134 aaaataaagtcaaattgttttcatataagctat 25006102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 27738280 - 27738248
Alignment:
Q  175 aaaataaagtcaatttgttttcatataagctat 207  Q
    ||||||||||||| |||||||||||||||||||    
T  27738280 aaaataaagtcaaattgttttcatataagctat 27738248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 269
Target Start/End: Original strand, 29635383 - 29635431
Alignment:
Q  221 tgaaaataagttgaaaagaacttatgaacatgtcataaattattttcat 269  Q
    |||||||||| |||||| ||||||| |||||||||||| || |||||||    
T  29635383 tgaaaataagctgaaaacaacttataaacatgtcataacttgttttcat 29635431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 37272686 - 37272654
Alignment:
Q  175 aaaataaagtcaatttgttttcatataagctat 207  Q
    |||||||||||||| ||||||||||||||||||    
T  37272686 aaaataaagtcaatctgttttcatataagctat 37272654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 44032099 - 44032067
Alignment:
Q  175 aaaataaagtcaatttgttttcatataagctat 207  Q
    ||||||||||||| |||||||||||||||||||    
T  44032099 aaaataaagtcaaattgttttcatataagctat 44032067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 277
Target Start/End: Original strand, 2996587 - 2996665
Alignment:
Q  199 ataagctatcctcaagagtgcatgaaaataagttgaaaagaacttatgaacatgtcataaattattttcatgagctctc 277  Q
    |||||||||| |  |||| | |||||||||||||||||| | |||||| ||||||||||| || ||||||| |||||||    
T  2996587 ataagctatcttggagagcgtatgaaaataagttgaaaaaagcttatggacatgtcataagttgttttcataagctctc 2996665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 17223072 - 17223022
Alignment:
Q  219 catgaaaataagttgaaaagaacttatgaacatgtcataaattattttcat 269  Q
    |||| |||||||||||||| | ||||||||||||||||||| |||||||||    
T  17223072 catggaaataagttgaaaacagcttatgaacatgtcataaactattttcat 17223022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 261
Target Start/End: Complemental strand, 8469408 - 8469371
Alignment:
Q  224 aaataagttgaaaagaacttatgaacatgtcataaatt 261  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  8469408 aaataagctgaaaacaacttatgaacatgtcataaatt 8469371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 257
Target Start/End: Complemental strand, 28300334 - 28300297
Alignment:
Q  220 atgaaaataagttgaaaagaacttatgaacatgtcata 257  Q
    |||||||||||||||||| |||||| ||||||||||||    
T  28300334 atgaaaataagttgaaaacaacttaagaacatgtcata 28300297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 13949944 - 13949912
Alignment:
Q  175 aaaataaagtcaatttgttttcatataagctat 207  Q
    ||||||||||||| |||||||||||||||||||    
T  13949944 aaaataaagtcaaattgttttcatataagctat 13949912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 18630650 - 18630682
Alignment:
Q  175 aaaataaagtcaatttgttttcatataagctat 207  Q
    ||||||||||||||| |||||||||||||||||    
T  18630650 aaaataaagtcaattggttttcatataagctat 18630682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 21952931 - 21952963
Alignment:
Q  175 aaaataaagtcaatttgttttcatataagctat 207  Q
    ||||||||||||| |||||||||||||||||||    
T  21952931 aaaataaagtcaaattgttttcatataagctat 21952963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 256
Target Start/End: Original strand, 24747354 - 24747390
Alignment:
Q  220 atgaaaataagttgaaaagaacttatgaacatgtcat 256  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  24747354 atgaaaataagctgaaaacaacttatgaacatgtcat 24747390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 25434560 - 25434528
Alignment:
Q  175 aaaataaagtcaatttgttttcatataagctat 207  Q
    |||||||||||||| ||||||||||||||||||    
T  25434560 aaaataaagtcaatatgttttcatataagctat 25434528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 276
Target Start/End: Complemental strand, 28614843 - 28614787
Alignment:
Q  220 atgaaaataagttgaaaagaacttatgaacatgtcataaattattttcatgagctct 276  Q
    ||||||||||| |||||||| |||||| | |||||||||||| ||| ||| ||||||    
T  28614843 atgaaaataagctgaaaagagcttatggatatgtcataaattgtttccataagctct 28614787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 220 - 277
Target Start/End: Complemental strand, 27708832 - 27708775
Alignment:
Q  220 atgaaaataagttgaaaagaacttatgaacatgtcataaattattttcatgagctctc 277  Q
    |||||||||||||||||| | |||||||||| ||  |||||||||||||| |||||||    
T  27708832 atgaaaataagttgaaaatagcttatgaacacgttgtaaattattttcataagctctc 27708775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 276
Target Start/End: Original strand, 7244715 - 7244771
Alignment:
Q  220 atgaaaataagttgaaaagaacttatgaacatgtcataaattattttcatgagctct 276  Q
    ||||||||||| |||||| ||||||||| ||||||||||||| ||| ||| ||||||    
T  7244715 atgaaaataagctgaaaacaacttatgagcatgtcataaattgtttccatcagctct 7244771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 269
Target Start/End: Original strand, 34035954 - 34036002
Alignment:
Q  222 gaaaataagttgaaaagaacttatgaac-atgtcataaattattttcat 269  Q
    |||||||||||||||| ||||||||||| ||||||||| ||||||||||    
T  34035954 gaaaataagttgaaaacaacttatgaacaatgtcataagttattttcat 34036002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 175 - 258
Target Start/End: Complemental strand, 39539861 - 39539778
Alignment:
Q  175 aaaataaagtcaatttgttttcatataagctatcctcaagagtgcatgaaaataagttgaaaagaacttatgaacatgtcataa 258  Q
    |||||||| |||| |||||||||||||||||||||||  |||    | |||||||| |||||| | |||||| |||||||||||    
T  39539861 aaaataaattcaaattgttttcatataagctatcctcgggagcttgtcaaaataagctgaaaacagcttatggacatgtcataa 39539778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 220 - 279
Target Start/End: Original strand, 46082071 - 46082130
Alignment:
Q  220 atgaaaataagttgaaaagaacttatgaacatgtcataaattattttcatgagctctcat 279  Q
    ||||||||||| |||||| ||||||||  |||||||||| || ||||||| |||||||||    
T  46082071 atgaaaataagctgaaaacaacttatggtcatgtcataagttgttttcataagctctcat 46082130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 261
Target Start/End: Complemental strand, 9423625 - 9423588
Alignment:
Q  224 aaataagttgaaaagaacttatgaacatgtcataaatt 261  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  9423625 aaataagctgaaaacaacttatgaacatgtcataaatt 9423588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 269
Target Start/End: Complemental strand, 15740446 - 15740397
Alignment:
Q  220 atgaaaataagttgaaaagaacttatgaacatgtcataaattattttcat 269  Q
    ||||||||||||| |||| | |||||||||||||||||| || |||||||    
T  15740446 atgaaaataagttaaaaacagcttatgaacatgtcataagttgttttcat 15740397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 265
Target Start/End: Original strand, 21247962 - 21248006
Alignment:
Q  221 tgaaaataagttgaaaagaacttatgaacatgtcataaattattt 265  Q
    |||||||||| | |||| |||||||||||||||||||| ||||||    
T  21247962 tgaaaataagcttaaaacaacttatgaacatgtcataagttattt 21248006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 23918927 - 23918959
Alignment:
Q  175 aaaataaagtcaatttgttttcatataagctat 207  Q
    ||||||||||||| |||||||||||||||||||    
T  23918927 aaaataaagtcaaattgttttcatataagctat 23918959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 248
Target Start/End: Original strand, 43648275 - 43648303
Alignment:
Q  220 atgaaaataagttgaaaagaacttatgaa 248  Q
    |||||||||||||||||||||||||||||    
T  43648275 atgaaaataagttgaaaagaacttatgaa 43648303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 189 - 258
Target Start/End: Original strand, 36200100 - 36200169
Alignment:
Q  189 ttgttttcatataagctatcctcaagagtgcatgaaaataagttgaaaagaacttatgaacatgtcataa 258  Q
    |||||||| |||||||||||||  ||||  |||| ||||||| |||||| |||||||| |||||||||||    
T  36200100 ttgttttcttataagctatcctgtagagctcatggaaataagctgaaaacaacttatggacatgtcataa 36200169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 207
Target Start/End: Original strand, 20669561 - 20669621
Alignment:
Q  148 acttatatataaactatttttataacaaaaata-aagtcaatttgttttcatataagctat 207  Q
    |||||| ||||| |||||| ||||||||||||| |||| || |||||||||||||||||||    
T  20669561 acttatgtataagctatttctataacaaaaatacaagttaaattgttttcatataagctat 20669621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 258
Target Start/End: Complemental strand, 3044294 - 3044256
Alignment:
Q  220 atgaaaataagttgaaaagaacttatgaacatgtcataa 258  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  3044294 atgaaaataagttgaaaacagcttatgaacatgtcataa 3044256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 258
Target Start/End: Original strand, 5391914 - 5391952
Alignment:
Q  220 atgaaaataagttgaaaagaacttatgaacatgtcataa 258  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  5391914 atgaaaataagttgaaaacagcttatgaacatgtcataa 5391952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 258
Target Start/End: Original strand, 25925777 - 25925815
Alignment:
Q  220 atgaaaataagttgaaaagaacttatgaacatgtcataa 258  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  25925777 atgaaaataagttgaaaacagcttatgaacatgtcataa 25925815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 258
Target Start/End: Complemental strand, 39602245 - 39602207
Alignment:
Q  220 atgaaaataagttgaaaagaacttatgaacatgtcataa 258  Q
    |||||||||||||||||| || |||||||||||||||||    
T  39602245 atgaaaataagttgaaaacaatttatgaacatgtcataa 39602207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 258
Target Start/End: Complemental strand, 52440697 - 52440659
Alignment:
Q  220 atgaaaataagttgaaaagaacttatgaacatgtcataa 258  Q
    |||||||| ||||||||| ||||||||||||||||||||    
T  52440697 atgaaaattagttgaaaacaacttatgaacatgtcataa 52440659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 257
Target Start/End: Complemental strand, 33883785 - 33883748
Alignment:
Q  220 atgaaaataagttgaaaagaacttatgaacatgtcata 257  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  33883785 atgaaaataagctgaaaacaacttatgaacatgtcata 33883748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 277
Target Start/End: Original strand, 37273173 - 37273226
Alignment:
Q  224 aaataagttgaaaagaacttatgaacatgtcataaattattttcatgagctctc 277  Q
    |||||||||||||| |||||||| ||||||||||| || ||| ||| |||||||    
T  37273173 aaataagttgaaaacaacttatggacatgtcataagttgtttccataagctctc 37273226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 269
Target Start/End: Complemental strand, 43116472 - 43116427
Alignment:
Q  224 aaataagttgaaaagaacttatgaacatgtcataaattattttcat 269  Q
    ||||||||||||||||||||| |||||||| |||| || |||||||    
T  43116472 aaataagttgaaaagaacttaagaacatgttataagttgttttcat 43116427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 269
Target Start/End: Original strand, 47513688 - 47513737
Alignment:
Q  220 atgaaaataagttgaaaagaacttatgaacatgtcataaattattttcat 269  Q
    |||||||||| ||||||| ||||||||||| |||||||| || |||||||    
T  47513688 atgaaaataaattgaaaacaacttatgaacgtgtcataacttgttttcat 47513737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 266
Target Start/End: Original strand, 52619039 - 52619084
Alignment:
Q  221 tgaaaataagttgaaaagaacttatgaacatgtcataaattatttt 266  Q
    |||||||||| |||||| | ||||||||||||||||||||| ||||    
T  52619039 tgaaaataaggtgaaaatagcttatgaacatgtcataaattgtttt 52619084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 5166343 - 5166395
Alignment:
Q  205 tatcctcaagagtgcatgaaaataagttgaaaagaacttatgaacatgtcata 257  Q
    |||| ||||||| | ||||||||||| |||||| | |||||||||||||||||    
T  5166343 tatcttcaagagcgtatgaaaataagatgaaaacagcttatgaacatgtcata 5166395  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 33405267 - 33405235
Alignment:
Q  175 aaaataaagtcaatttgttttcatataagctat 207  Q
    |||||||||| ||||||||||||||||||||||    
T  33405267 aaaataaagttaatttgttttcatataagctat 33405235  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 276
Target Start/End: Original strand, 9027613 - 9027669
Alignment:
Q  220 atgaaaataagttgaaaagaacttatgaacatgtcataaattattttcatgagctct 276  Q
    ||||||||||| |||||| |||||||| ||||||||||| |||||| ||| ||||||    
T  9027613 atgaaaataagctgaaaacaacttatggacatgtcataagttatttccataagctct 9027669  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 30604916 - 30604968
Alignment:
Q  205 tatcctcaagagtgcatgaaaataagttgaaaagaacttatgaacatgtcata 257  Q
    |||||| ||||| | ||| |||||||||||||||||||||||||||| |||||    
T  30604916 tatcctgaagagagtatggaaataagttgaaaagaacttatgaacatttcata 30604968  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 277
Target Start/End: Complemental strand, 32578060 - 32577964
Alignment:
Q  181 aagtcaatttgttttcatataagctatcctcaagagtgcatgaaaataagttgaaaagaacttatgaacatgtcataaattattttcatgagctctc 277  Q
    ||||||| ||||| |||||||||||||||| |||||   ||| ||||||| |||||| | || | | ||||||||||| || ||||||| |||||||    
T  32578060 aagtcaaattgttctcatataagctatcctgaagagcatatggaaataagctgaaaacagctcaaggacatgtcataagttgttttcataagctctc 32577964  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 258
Target Start/End: Original strand, 6647422 - 6647460
Alignment:
Q  220 atgaaaataagttgaaaagaacttatgaacatgtcataa 258  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  6647422 atgaaaataagttgaaaacatcttatgaacatgtcataa 6647460  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 278
Target Start/End: Original strand, 22743520 - 22743574
Alignment:
Q  224 aaataagttgaaaagaacttatgaacatgtcataaattattttcatgagctctca 278  Q
    ||||||| |||||| | ||||||||||||| |||| || ||||||||||||||||    
T  22743520 aaataagctgaaaacagcttatgaacatgtaataagttgttttcatgagctctca 22743574  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 258
Target Start/End: Original strand, 31624125 - 31624163
Alignment:
Q  220 atgaaaataagttgaaaagaacttatgaacatgtcataa 258  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  31624125 atgaaaataagttgaaaacagcttatgaacatgtcataa 31624163  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 269
Target Start/End: Complemental strand, 34882456 - 34882406
Alignment:
Q  220 atgaaaataagttgaaaagaacttatgaac-atgtcataaattattttcat 269  Q
    |||||||||||| ||||| ||||||||||| ||||||||| ||||||||||    
T  34882456 atgaaaataagtggaaaacaacttatgaacaatgtcataacttattttcat 34882406  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 269
Target Start/End: Original strand, 1575930 - 1575979
Alignment:
Q  220 atgaaaataagttgaaaagaacttatgaacatgtcataaattattttcat 269  Q
    ||||||||||||| |||| | |||||||||||||||||| || |||||||    
T  1575930 atgaaaataagttaaaaacagcttatgaacatgtcataagttgttttcat 1575979  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 269
Target Start/End: Original strand, 4080955 - 4081000
Alignment:
Q  224 aaataagttgaaaagaacttatgaacatgtcataaattattttcat 269  Q
    |||||||||||||| |||||||||||||| ||||| || |||||||    
T  4080955 aaataagttgaaaacaacttatgaacatggcataagttgttttcat 4081000  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 269
Target Start/End: Complemental strand, 20368215 - 20368166
Alignment:
Q  220 atgaaaataagttgaaaagaacttatgaacatgtcataaattattttcat 269  Q
    |||||||||||||||||  | |||||||||||||||||| || |||||||    
T  20368215 atgaaaataagttgaaactagcttatgaacatgtcataagttgttttcat 20368166  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 207
Target Start/End: Original strand, 22742288 - 22742368
Alignment:
Q  133 gcttattgtatacgtacttatatataaactatttttataacaaa------aataaagtcaatttgttttcatataagctat 207  Q
    |||||| ||||| || ||||| ||||| |||||| |||||||||      ||||||||||| |||||||||||||||||||    
T  22742288 gcttatcgtataagttcttatctataagctatttgtataacaaaggataaaataaagtcaaattgttttcatataagctat 22742368  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 261
Target Start/End: Complemental strand, 29296330 - 29296289
Alignment:
Q  220 atgaaaataagttgaaaagaacttatgaacatgtcataaatt 261  Q
    ||||||||||| |||||| |||||||| ||||||||||||||    
T  29296330 atgaaaataagctgaaaataacttatggacatgtcataaatt 29296289  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 31337945 - 31337986
Alignment:
Q  133 gcttattgtatacgtacttatatataaactatttttataaca 174  Q
    |||||||||||| |||||||| |||||||||||| |||||||    
T  31337945 gcttattgtataagtacttatgtataaactatttctataaca 31337986  T

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Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 269
Target Start/End: Original strand, 33887869 - 33887914
Alignment:
Q  224 aaataagttgaaaagaacttatgaacatgtcataaattattttcat 269  Q
    |||||||||||||| ||||| ||||||||||||||  |||||||||    
T  33887869 aaataagttgaaaacaacttgtgaacatgtcataagctattttcat 33887914  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 281948 - 281916
Alignment:
Q  175 aaaataaagtcaatttgttttcatataagctat 207  Q
    ||||||||||||| |||||||||||||||||||    
T  281948 aaaataaagtcaacttgttttcatataagctat 281916  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 276
Target Start/End: Complemental strand, 7931757 - 7931705
Alignment:
Q  224 aaataagttgaaaagaacttatgaacatgtcataaattattttcatgagctct 276  Q
    ||||||| |||||| |||||| ||||||||||||| || ||||||| ||||||    
T  7931757 aaataagctgaaaacaacttaagaacatgtcataagttgttttcataagctct 7931705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 21959698 - 21959730
Alignment:
Q  175 aaaataaagtcaatttgttttcatataagctat 207  Q
    |||||||||||||||||||| ||||||||||||    
T  21959698 aaaataaagtcaatttgtttgcatataagctat 21959730  T

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Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 29274329 - 29274297
Alignment:
Q  175 aaaataaagtcaatttgttttcatataagctat 207  Q
    ||||||||||||| |||||||||||||||||||    
T  29274329 aaaataaagtcaaattgttttcatataagctat 29274297  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 274
Target Start/End: Original strand, 10285899 - 10285949
Alignment:
Q  224 aaataagttgaaaagaacttatgaacatgtcataaattattttcatgagct 274  Q
    |||||||||||||| | |||||| ||||||||||| |||||||||| ||||    
T  10285899 aaataagttgaaaacagcttatggacatgtcataagttattttcataagct 10285949  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 258
Target Start/End: Complemental strand, 29316806 - 29316772
Alignment:
Q  224 aaataagttgaaaagaacttatgaacatgtcataa 258  Q
    ||||||| |||||||||||||||||||||||||||    
T  29316806 aaataagctgaaaagaacttatgaacatgtcataa 29316772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 285
Target Start/End: Complemental strand, 43065481 - 43065420
Alignment:
Q  224 aaataagttgaaaagaacttatgaacatgtcataaattattttcatgagctctcataagtag 285  Q
    ||||||| |||||| || ||||| ||||||||||| || ||||||| |||||||| ||||||    
T  43065481 aaataagctgaaaacaatttatggacatgtcataagttgttttcataagctctcacaagtag 43065420  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 11513868 - 11513900
Alignment:
Q  175 aaaataaagtcaatttgttttcatataagctat 207  Q
    ||||||||||||| |||||||||||||||||||    
T  11513868 aaaataaagtcaaattgttttcatataagctat 11513900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 33944575 - 33944607
Alignment:
Q  175 aaaataaagtcaatttgttttcatataagctat 207  Q
    ||||||||||||| |||||||||||||||||||    
T  33944575 aaaataaagtcaaattgttttcatataagctat 33944607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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