View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4793_low_1 (Length: 861)
Name: NF4793_low_1
Description: NF4793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4793_low_1 |
 | |
|
| [»] scaffold0077 (7 HSPs) |
| | |
|
| [»] scaffold0149 (2 HSPs) |
| | |
|
| [»] scaffold0003 (7 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 11 - 297
Target Start/End: Complemental strand, 1781597 - 1781311
Alignment:
| Q |
11 |
tgagatgaatccattgcgttttgtttgaatcgatctatgaggaggttctaacactattgcagattttgtaagaaagagttttgtgtttgtgaaacaacaa |
110 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1781597 |
tgagaagaatccattgcgttttgtttgaatcgatctatgaggaggttctaacactattgcagattttgtaagaaagagttttgtgtttgtgaaacaacaa |
1781498 |
T |
|
| Q |
111 |
gatcacgatgctttgataattttcttttccttttaaaatacactaaattctctctaggtgtactataatttcatttcatgttgaagtggcgcattggcat |
210 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1781497 |
gatcgcgatgctttgataattttcttttccttttaaaatacactaaattctctctaggtgtactataatttcatttcatgttgaagtggcgcattggcat |
1781398 |
T |
|
| Q |
211 |
tgcatcctatttgatctttattttaaaattttaaattgggcatttaaactactcattttgtaagaataaaagaaaaagtgactatta |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
1781397 |
tgcatcctatttgatctttattttaaaattttaaattgggcattttaactactcattttgtaagaataaaaggaaaagtgactatta |
1781311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0077 (Bit Score: 257; Significance: 1e-142; HSPs: 7)
Name: scaffold0077
Description:
Target: scaffold0077; HSP #1
Raw Score: 257; E-Value: 1e-142
Query Start/End: Original strand, 496 - 842
Target Start/End: Original strand, 42410 - 42758
Alignment:
| Q |
496 |
ctttgggccaaaatttctcttttcacaatattccacat--gtgttttatctgttattattgttgaaccccgcccaaaagagtaaacctttagacgatgaa |
593 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||| |||||| |||||||||||||||| |
|
|
| T |
42410 |
ctttgagccaaaatttctcttttcacaatattccacatatgtgttttatctattattattgttgaaccccacccaagagagtacacctttagacgatgaa |
42509 |
T |
|
| Q |
594 |
tctgtcattnnnnnnnttaagtattaatgaaatgatgatgaggttgtcacaggaagacagggtttttgacaccaaggcaaataccttgtcatcaatgttg |
693 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
42510 |
tctgtcattaaaaaaatttagtattaatgaaatgatgatgaggttgtcataggaagacatggtttttgacaccaaggtaaataccttgtcatcaatgttg |
42609 |
T |
|
| Q |
694 |
cacatagaagaaagtgactcattatccttccaaatgttccattttttctgaaactctccctcctaaattttgtgaaaggtttgaaacatgttattttcta |
793 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||| |
|
|
| T |
42610 |
cacatagaagaaagtgactcctcatccttccaaatgttccattttttctgaaactctccctcctgattttcgtgaaaggtttgaaacatgttattttcta |
42709 |
T |
|
| Q |
794 |
tcattagttgttgaaaacaacatgttaatttaagatttaagtgtaacat |
842 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
42710 |
tcattagttgttgaaaataacatgttaatttaagatttaagtgtaacat |
42758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0077; HSP #2
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 496 - 842
Target Start/End: Original strand, 41276 - 41624
Alignment:
| Q |
496 |
ctttgggccaaaatttctcttttcacaatattccacat--gtgttttatctgttattattgttgaaccccgcccaaaagagtaaacctttagacgatgaa |
593 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||| | |||||||||||||| |
|
|
| T |
41276 |
ctttgagccaaaatttctcttttcacaatattccacatatgtgttttatctgttattattgttgaaccccacccaagagagtacaactttagacgatgaa |
41375 |
T |
|
| Q |
594 |
tctgtcattnnnnnnnttaagtattaatgaaatgatgatgaggttgtcacaggaagacagggtttttgacaccaaggcaaataccttgtcatcaatgttg |
693 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||| | |||||||| |||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
41376 |
tctgtcattaaaaaaatttagtattaatgaaatgatgatgaggttgtgattggaagacatggttattgacaccaaggcaaatacattgtcatcaatgttg |
41475 |
T |
|
| Q |
694 |
cacatagaagaaagtgactcattatccttccaaatgttccattttttctgaaactctccctcctaaattttgtgaaaggtttgaaacatgttattttcta |
793 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
41476 |
cacatagaagaaagtgactcctcatccttccaaatgttccattttttctgaaactctccctcctgaattttttgaaaggtttgaaacatgttattttcta |
41575 |
T |
|
| Q |
794 |
tcattagttgttgaaaacaacatgttaatttaagatttaagtgtaacat |
842 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
41576 |
tcattagttgttgaaaacattatgttaatttaagatttaagtgtaacat |
41624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0077; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 496 - 800
Target Start/End: Complemental strand, 51641 - 51335
Alignment:
| Q |
496 |
ctttgggccaaaatttctcttttcacaatattccacat--gtgttttatctgttattattgttgaaccccgcccaaaagagtaaacctttagacgatgaa |
593 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||| |||||| |||||||||||||||| |
|
|
| T |
51641 |
ctttgagccaaaatttctcttttcacaatattccacatatgtgttttatctattattattgttgaaccccacccaagagagtacacctttagacgatgaa |
51542 |
T |
|
| Q |
594 |
tctgtcattnnnnnnnttaagtattaatgaaatgatgatgaggttgtcacaggaagacagggtttttgacaccaaggcaaataccttgtcatcaatgttg |
693 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
51541 |
tctgtcattaaaaaaatttagtattaatgaaatgatgatgaggttgtcataggaagacatggtttttgacaccaaggtaaataccttgtcatcaatgttg |
51442 |
T |
|
| Q |
694 |
cacatagaagaaagtgactcattatccttccaaatgttccattttttctgaaactctccctcctaaattttgtgaaaggtttgaaacatgttattttcta |
793 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||| |
|
|
| T |
51441 |
cacatagaagaaagtgactcctcatccttccaaatgttccattttttctgaaactctccctcctgattttcgtgaaaggtttgaaacatgttattttcta |
51342 |
T |
|
| Q |
794 |
tcattag |
800 |
Q |
| |
|
||||||| |
|
|
| T |
51341 |
tcattag |
51335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0077; HSP #4
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 548 - 800
Target Start/End: Complemental strand, 61335 - 61083
Alignment:
| Q |
548 |
attattgttgaaccccgcccaaaagagtaaacctttagacgatgaatctgtcattnnnnnnnttaagtattaatgaaatgatgatgaggttgtcacagga |
647 |
Q |
| |
|
|||||||||||||||| ||||| |||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||| |
|
|
| T |
61335 |
attattgttgaaccccacccaagagagtacacctttagacgatgaatctgtcattaaaaaaatttagtattaatgaaatgatgatgaggttgtcatagga |
61236 |
T |
|
| Q |
648 |
agacagggtttttgacaccaaggcaaataccttgtcatcaatgttgcacatagaagaaagtgactcattatccttccaaatgttccattttttctgaaac |
747 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
61235 |
agacatggtttttgacaccaaggtaaataccttgtcatcaatgttgcacatagaagaaagtgactcctcatccttccaaatgttccattttttctgaaac |
61136 |
T |
|
| Q |
748 |
tctccctcctaaattttgtgaaaggtttgaaacatgttattttctatcattag |
800 |
Q |
| |
|
|||||||||| | ||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
61135 |
tctccctcctgattttcgtgaaaggtttgaaacatgttattttctatcattag |
61083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0077; HSP #5
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 343 - 434
Target Start/End: Original strand, 41123 - 41214
Alignment:
| Q |
343 |
gattttgtagattgatagctatccgtagtaattggattgtgcaaattgctaaaattaataaattattgttttgtctcaaagatgaattagtg |
434 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
41123 |
gattttgtagattgatagctctccgtagttattggattgtgcaaattgctaaaataaataaattattgttttgtctcaaagatgaattagtg |
41214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0077; HSP #6
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 335 - 434
Target Start/End: Original strand, 42249 - 42348
Alignment:
| Q |
335 |
ttaacttagattttgtagattgatagctatccgtagtaattggattgtgcaaattgctaaaattaataaattattgttttgtctcaaagatgaattagtg |
434 |
Q |
| |
|
||||||| |||||||||||||||||||| || ||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
42249 |
ttaactttgattttgtagattgatagctctctgtagttattggtttgtgcaaattgctaaaataaataaattattgttttgtctcaaagatgaattagtg |
42348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0077; HSP #7
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 335 - 434
Target Start/End: Complemental strand, 51802 - 51703
Alignment:
| Q |
335 |
ttaacttagattttgtagattgatagctatccgtagtaattggattgtgcaaattgctaaaattaataaattattgttttgtctcaaagatgaattagtg |
434 |
Q |
| |
|
||||||| |||||||||||||||||||| || ||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
51802 |
ttaactttgattttgtagattgatagctctctgtagttattggtttgtgcaaattgctaaaataaataaattattgttttgtctcaaagatgaattagtg |
51703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 496 - 842
Target Start/End: Complemental strand, 41934325 - 41933978
Alignment:
| Q |
496 |
ctttgggccaaaatttctcttttcacaatattccacat--gtgttttatctgttattattgttgaaccccgcccaaaagagtaaacctttagacgatgaa |
593 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||| |||||| |||||||||||||||| |
|
|
| T |
41934325 |
ctttgagccaaaatttctcttttcacaatattccacatatgtgttttatcagttattattgttgaaccccacccaagagagtacacctttagacgatgaa |
41934226 |
T |
|
| Q |
594 |
tctgtcattnnnnnnnttaagtattaatgaaatgatgatgaggttgtcacaggaagacagggtttttgacaccaaggcaaataccttgtcatcaatgttg |
693 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
41934225 |
tctgtcattaaaaaa-ttaagtattaatgaaatgatgatgaggttgtcataggaagacatggtttttgataccaaggcaaatactttgtcatcaatgttg |
41934127 |
T |
|
| Q |
694 |
cacatagaagaaagtgactcattatccttccaaatgttccattttttctgaaactctccctcctaaattttgtgaaaggtttgaaacatgttattttcta |
793 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||| |||||||||| |||| |
|
|
| T |
41934126 |
cacatagaagaaagtgactcctcatccttccaaatgttctattttttctgaaactctccctcctgaattttgtgataggtttgagacatgttattgtcta |
41934027 |
T |
|
| Q |
794 |
tcattagttgttgaaaacaacatgttaatttaagatttaagtgtaacat |
842 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41934026 |
tcattagttgttgaaaacaacatgttaatttaagatttaagtgtaacat |
41933978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 335 - 434
Target Start/End: Complemental strand, 41934486 - 41934387
Alignment:
| Q |
335 |
ttaacttagattttgtagattgatagctatccgtagtaattggattgtgcaaattgctaaaattaataaattattgttttgtctcaaagatgaattagtg |
434 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
41934486 |
ttaacttagatgttgtagattgatagctctccgtagttattggattaggcaaattgctaaaataaataaattattgttttgtctcaaagatgaattagtg |
41934387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0149 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: scaffold0149
Description:
Target: scaffold0149; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 496 - 842
Target Start/End: Complemental strand, 19345 - 18999
Alignment:
| Q |
496 |
ctttgggccaaaatttctcttttcacaatattccacatgtgttttatctgttattattgttgaaccccgcccaaaagagtaaacctttagacgatgaatc |
595 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||| |
|
|
| T |
19345 |
ctttgagccaaaatttctcttttgacaatattccacatgtgttttatctgttattattgttgaaccccaaccaagagagtacacctttagacgatgaatc |
19246 |
T |
|
| Q |
596 |
tgtcattnnnnnnnttaagtattaatgaaatgatgatgaggttgtcacaggaagacagggtttttgacaccaaggcaaataccttgtcatcaatgttgca |
695 |
Q |
| |
|
||||||| || |||||||||||||| ||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19245 |
tgtcattaaaaatttttagtattaatgaaataatgatgaggttgtcataagaagacatggtttttgacaccaaggcaaataccttgtcatcaatgttgca |
19146 |
T |
|
| Q |
696 |
catagaagaaagtgactcattatccttccaaatgttccattttttctgaaactctccctcctaaattttgtgaaaggtttgaaacatgttattttctatc |
795 |
Q |
| |
|
|||||||||||||| ||| | ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
19145 |
catagaagaaagtggctcctcatccttccaaatgtttcattttttctgaaactctccctcctgaattttgtgaaaggtttgaaacatgttattttctatg |
19046 |
T |
|
| Q |
796 |
attagttgttgaaaacaacatgttaatttaagatttaagtgtaacat |
842 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
19045 |
attaagtgttgaaaataacatgttaatttaagatttaagtgtaacat |
18999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0149; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 343 - 434
Target Start/End: Complemental strand, 19498 - 19407
Alignment:
| Q |
343 |
gattttgtagattgatagctatccgtagtaattggattgtgcaaattgctaaaattaataaattattgttttgtctcaaagatgaattagtg |
434 |
Q |
| |
|
|||||||||| ||||||||| || ||||| ||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
19498 |
gattttgtaggttgatagctctctgtagttattggattgtgcaaattactaatataaataaattattgttttgtctcaaagatgaattagtg |
19407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 245; Significance: 1e-135; HSPs: 7)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 496 - 842
Target Start/End: Original strand, 199469 - 199817
Alignment:
| Q |
496 |
ctttgggccaaaatttctcttttcacaatattccacat--gtgttttatctgttattattgttgaaccccgcccaaaagagtaaacctttagacgatgaa |
593 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||| | |||||||||||||| |
|
|
| T |
199469 |
ctttgagccaaaatttctcttttcacaatattccacatatgtgttttatctgttattattgttgaaccccacccaagagagtacaactttagacgatgaa |
199568 |
T |
|
| Q |
594 |
tctgtcattnnnnnnnttaagtattaatgaaatgatgatgaggttgtcacaggaagacagggtttttgacaccaaggcaaataccttgtcatcaatgttg |
693 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||| | |||||||| |||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
199569 |
tctgtcattaaaaaaatttagtattaatgaaatgatgatgaggttgtgattggaagacatggttattgacaccaaggcaaatacattgtcatcaatgttg |
199668 |
T |
|
| Q |
694 |
cacatagaagaaagtgactcattatccttccaaatgttccattttttctgaaactctccctcctaaattttgtgaaaggtttgaaacatgttattttcta |
793 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
199669 |
cacatagaagaaagtgactcctcatccttccaaatgttccattttttctgaaactctccctcctgaattttttgaaaggtttgaaacatgttattttcta |
199768 |
T |
|
| Q |
794 |
tcattagttgttgaaaacaacatgttaatttaagatttaagtgtaacat |
842 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
199769 |
tcattagttgttgaaaacattatgttaatttaagatttaagtgtaacat |
199817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 157; E-Value: 5e-83
Query Start/End: Original strand, 625 - 842
Target Start/End: Original strand, 192924 - 193137
Alignment:
| Q |
625 |
atgatgatgaggttgtcacaggaagacagggtttttgacaccaaggcaaataccttgtcatcaatgttgcacatagaagaaagtgactcattatccttcc |
724 |
Q |
| |
|
|||||||||| ||||||| ||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
192924 |
atgatgatgatgttgtcataggaagacatggttttggacaccaaggcaaatactttgtcatcaatgttgcacatagaagaaagtgactcctcatccttcc |
193023 |
T |
|
| Q |
725 |
aaatgttccattttttctgaaactctccctcctaaattttgtgaaaggtttgaaacatgttattttctatcattagttgttgaaaacaacatgttaattt |
824 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
193024 |
aactgttccattttttctgaaactctccctcctgaattttgtgataagtttgaaacatgttat----tatcattagttgttgaaaacaacatgttaattt |
193119 |
T |
|
| Q |
825 |
aagatttaagtgtaacat |
842 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
193120 |
aagatttaagtgtaacat |
193137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 335 - 434
Target Start/End: Original strand, 163967 - 164066
Alignment:
| Q |
335 |
ttaacttagattttgtagattgatagctatccgtagtaattggattgtgcaaattgctaaaattaataaattattgttttgtctcaaagatgaattagtg |
434 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| | ||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
163967 |
ttaacttagattttgtagattgatagctctccgtatttattggattgtgcagattgctaaaataaataaatatatgttttgtctcaaagatgaattagtg |
164066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #4
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 335 - 434
Target Start/End: Original strand, 172082 - 172181
Alignment:
| Q |
335 |
ttaacttagattttgtagattgatagctatccgtagtaattggattgtgcaaattgctaaaattaataaattattgttttgtctcaaagatgaattagtg |
434 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| | ||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
172082 |
ttaacttagattttgtagattgatagctctccgtatttattggattgtgcagattgctaaaataaataaatatatgttttgtctcaaagatgaattagtg |
172181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 503 - 601
Target Start/End: Original strand, 164135 - 164234
Alignment:
| Q |
503 |
ccaaaatttctcttttcacaatattccacatgt--gttttatctgttattattgttgaaccccgcccaaaagagtaaacctttagacgatgaatctgtca |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||| |||||| ||| |||||| |||||||||||| |
|
|
| T |
164135 |
ccaaaatttctcttttcacaatattccacatatttgttttatctgttattattgttgaaccccacccaagagagtacacc-ttagacaatgaatctgtca |
164233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 503 - 601
Target Start/End: Original strand, 172250 - 172349
Alignment:
| Q |
503 |
ccaaaatttctcttttcacaatattccacatgt--gttttatctgttattattgttgaaccccgcccaaaagagtaaacctttagacgatgaatctgtca |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||| |||||| ||| |||||| |||||||||||| |
|
|
| T |
172250 |
ccaaaatttctcttttcacaatattccacatatttgttttatctgttattattgttgaaccccacccaagagagtacacc-ttagacaatgaatctgtca |
172348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #7
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 367 - 434
Target Start/End: Original strand, 199340 - 199407
Alignment:
| Q |
367 |
gtagtaattggattgtgcaaattgctaaaattaataaattattgttttgtctcaaagatgaattagtg |
434 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
199340 |
gtagttattggattgtgcaaattgctaaaataaataaattattgttttgtctcaaagatgaattagtg |
199407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 496 - 842
Target Start/End: Complemental strand, 17101746 - 17101398
Alignment:
| Q |
496 |
ctttgggccaaaatttctcttttcacaatattccacat--gtgttttatctgttattattgttgaaccccgcccaaaagagtaaacctttagacgatgaa |
593 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||| |
|
|
| T |
17101746 |
ctttgagccaaaatttctcttttcacaatattccacatatgtgttttatctgttattattgttgaaccccacccaagagagtgcacctttagacgatgaa |
17101647 |
T |
|
| Q |
594 |
tctgtcattnnnnnnnttaagtattaatgaaatgatgatgaggttgtcacaggaagacagggtttttgacaccaaggcaaataccttgtcatcaatgttg |
693 |
Q |
| |
|
||||| ||| |||||||||||| |||||||||| | ||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
17101646 |
tctgtgattaaaaaaattaagtattaattaaatgatgataaagttgtcataggaagacatggtttttgacaccaaggcaaatactttgtcatcaatgttg |
17101547 |
T |
|
| Q |
694 |
cacatagaagaaagtgactcattatccttccaaatgttccattttttctgaaactctccctcctaaattttgtgaaaggtttgaaacatgttattttcta |
793 |
Q |
| |
|
||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||| |||| |
|
|
| T |
17101546 |
cacatagaagaaagtaactcctcatccttccaaatgttccattttttctgaaactctccctcctgaattttgtgataggttttaaacatgttattgtcta |
17101447 |
T |
|
| Q |
794 |
tcattagttgttgaaaacaacatgttaatttaagatttaagtgtaacat |
842 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
17101446 |
tcattagttgttgaaaataacatgttaatttaagatttaagtgtaacat |
17101398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 335 - 434
Target Start/End: Complemental strand, 17101907 - 17101808
Alignment:
| Q |
335 |
ttaacttagattttgtagattgatagctatccgtagtaattggattgtgcaaattgctaaaattaataaattattgttttgtctcaaagatgaattagtg |
434 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||| |||||||| |||||||| ||||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
17101907 |
ttaacttagatgttgtagattgatagctctccgtagttattggattatgcaaattactaaaataaataaattattattttgtctcaaagatgaattagtg |
17101808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 335 - 407
Target Start/End: Original strand, 22392763 - 22392835
Alignment:
| Q |
335 |
ttaacttagattttgtagattgatagctatccgtagtaattggattgtgcaaattgctaaaattaataaatta |
407 |
Q |
| |
|
||||||||||| ||| ||||| |||| | |||||||| ||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
22392763 |
ttaacttagatgttgcagattcatagttgtccgtagttattggattgtgaaaattgctaaaataaataaatta |
22392835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 183; Significance: 2e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 2e-98
Query Start/End: Original strand, 496 - 842
Target Start/End: Complemental strand, 19455037 - 19454706
Alignment:
| Q |
496 |
ctttgggccaaaatttctcttttcacaatattccacatgtgt--tttatctgttattattgttgaaccccgcccaaaagagtaaacctttagacgatgaa |
593 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||| |||||| ||||| |||||||||| |
|
|
| T |
19455037 |
ctttgagccaaaatttctgttttcacaatattccacatatgtattttatctgttattattgttgaaccccacccaagagagtacaccttcagacgatgaa |
19454938 |
T |
|
| Q |
594 |
tctgtcattnnnnnnnttaagtattaatgaaatgatgatgaggttgtcacaggaagacagggtttttgacaccaaggcaaataccttgtcatcaatgttg |
693 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| | ||||||||||||| |
|
|
| T |
19454937 |
t----------------taagtattaatgaaatgatgatgaggttgtcataggaagacgtggtttttgacaccaaggtaaatatc--gtcatcaatgttg |
19454856 |
T |
|
| Q |
694 |
cacatagaagaaagtgactcattatccttccaaatgttccatttttt-ctgaaactctccctcctaaattttgtgaaaggtttgaaacatgttattttct |
792 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||||||||||| |||||| | |||||| | | |||||||| ||||||||||||||||||| ||| |
|
|
| T |
19454855 |
cacatagaagaaagtgactcctcatccttccaaatgttccatttttttctgaaattatccctcgtgacttttgtgataggtttgaaacatgttattgtct |
19454756 |
T |
|
| Q |
793 |
atcattagttgttgaaaacaacatgttaatttaagatttaagtgtaacat |
842 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19454755 |
atcattagttgttgaaaacaacatgttaatttaagatttaagtgtaacat |
19454706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 335 - 434
Target Start/End: Complemental strand, 19455199 - 19455100
Alignment:
| Q |
335 |
ttaacttagattttgtagattgatagctatccgtagtaattggattgtgcaaattgctaaaattaataaattattgttttgtctcaaagatgaattagtg |
434 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
19455199 |
ttaacttagatgttgtagattgatagctctccgtagttattggattgtgcaaattgctaaaataaataaattattgttttgtctcaaagatgaattagtg |
19455100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 675 - 788
Target Start/End: Complemental strand, 22154976 - 22154863
Alignment:
| Q |
675 |
taccttgtcatcaatgttgcacatagaagaaagtgactcattatccttccaaatgttccattttttctgaaactctccctcctaaattttgtgaaaggtt |
774 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | | ||||||||| |||||||||||||||| |||||| ||||||| ||||| |||||| || |
|
|
| T |
22154976 |
taccttgtcatcaatgttgcacatagaagaaagtgtatgctcatccttccatatgttccattttttctaaaactccccctcctttattttttgaaagttt |
22154877 |
T |
|
| Q |
775 |
tgaaacatgttatt |
788 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
22154876 |
tgaaacatgatatt |
22154863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 497 - 598
Target Start/End: Complemental strand, 22155163 - 22155060
Alignment:
| Q |
497 |
tttgggccaaaatttctcttttcacaatattccaca--tgtgttttatctgttattattgttgaaccccgcccaaaagagtaaacctttagacgatgaat |
594 |
Q |
| |
|
|||| ||||| |||| ||||||||||||||||||| |||||||||||| |||||||| ||||||||| |||| |||||||| | ||||||||||| |
|
|
| T |
22155163 |
tttgagccaatattttccttttcacaatattccacaattgtgttttatctattattattcttgaaccccatccaagcgagtaaacatccagacgatgaat |
22155064 |
T |
|
| Q |
595 |
ctgt |
598 |
Q |
| |
|
||| |
|
|
| T |
22155063 |
ttgt |
22155060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 679 - 755
Target Start/End: Original strand, 22138174 - 22138250
Alignment:
| Q |
679 |
ttgtcatcaatgttgcacatagaagaaagtgactcattatccttccaaatgttccattttttctgaaactctccctc |
755 |
Q |
| |
|
||||| |||||||||||||||||||| |||| | | ||||||||| |||||||||||||| | |||||| ||||| |
|
|
| T |
22138174 |
ttgtcgtcaatgttgcacatagaagatagtgtttgctcatccttccatatgttccattttttttaaaactccccctc |
22138250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 497 - 560
Target Start/End: Original strand, 22137996 - 22138061
Alignment:
| Q |
497 |
tttgggccaaaatttctcttttcacaatattccaca--tgtgttttatctgttattattgttgaac |
560 |
Q |
| |
|
|||| ||||| |||| | |||||||||||||||||| | |||||||||| ||||||||||||||| |
|
|
| T |
22137996 |
tttgagccaatatttatattttcacaatattccacaactatgttttatctcttattattgttgaac |
22138061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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