View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4793_low_10 (Length: 366)
Name: NF4793_low_10
Description: NF4793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4793_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 7 - 356
Target Start/End: Complemental strand, 25255722 - 25255373
Alignment:
| Q |
7 |
catgtgtcggtagtcttccacattaagatcctacttgggaaactccttgagccttaacagctgcaacggaagccgcagtagcggctgccgaaaccgcaac |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
25255722 |
catgtgtcggtagtcttccacattaagatcctacttgggaaactccttgagccttaacagctgcaacggaagccgcagtagcggctgcggaaaccgcaac |
25255623 |
T |
|
| Q |
107 |
acctactggattggactgtgaacttccttgagcttcgactacacatgattgcggctgttgctgcggggatttgacttttgcaagtaattcctttatctga |
206 |
Q |
| |
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| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25255622 |
aactactggattggactgtgaatttccttgagcttcgactacacatgattgcggctgttgctgcggggatttgacttttgcaagtaattcctttatctga |
25255523 |
T |
|
| Q |
207 |
cttcctgtaagtgtctcatgctccataagagcatttgcaagcgcatgaagctccttttcatgggtggttataatagtttttgcatttttgtaagctctgt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
25255522 |
cttcctgtaagtgtctcatgctccataagagcatttgcaagcgcatgaagctccttttcatgggtggttataatagtttttgcattcttgtaagctctgt |
25255423 |
T |
|
| Q |
307 |
caagcaatttcttcacttctttctcaataagcagcctagtttctgtgctc |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
25255422 |
caagcaatttcttcacttctttctcaataagcagcctagtttctgagctc |
25255373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 7 - 356
Target Start/End: Complemental strand, 48143150 - 48142801
Alignment:
| Q |
7 |
catgtgtcggtagtcttccacattaagatcctacttgggaaactccttgagccttaacagctgcaacggaagccgcagtagcggctgccgaaaccgcaac |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||| |
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|
| T |
48143150 |
catgtgtcggtagtcttccacattaagatcctacttgggaaactccttgagccttaacagctgcaatggaagccgcagcagcggctgcggaaaccgcaac |
48143051 |
T |
|
| Q |
107 |
acctactggattggactgtgaacttccttgagcttcgactacacatgattgcggctgttgctgcggggatttgacttttgcaagtaattcctttatctga |
206 |
Q |
| |
|
| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
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|
| T |
48143050 |
aactgctggattggactgtgaatttccttgagcttcgactacacatgattgcggctgttgctgctgggatttgacctttgcaagtaattcctttatctga |
48142951 |
T |
|
| Q |
207 |
cttcctgtaagtgtctcatgctccataagagcatttgcaagcgcatgaagctccttttcatgggtggttataatagtttttgcatttttgtaagctctgt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| | |
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|
| T |
48142950 |
cttcctgtaagtgtctcatgctccataagagcatttgcaagcgcatgaagctccttttcatgggtggttagaatagtttttgcattcttgtaagctctat |
48142851 |
T |
|
| Q |
307 |
caagcaatttcttcacttctttctcaataagcagcctagtttctgtgctc |
356 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
48142850 |
caaacaatttcttcacttctttctcaataagcagcctagtttctgagctc |
48142801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 124 - 356
Target Start/End: Original strand, 48130787 - 48131019
Alignment:
| Q |
124 |
gtgaacttccttgagcttcgactacacatgattgcggctgttgctgcggggatttgacttttgcaagtaattcctttatctgacttcctgtaagtgtctc |
223 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48130787 |
gtgaacttccctgagtttcgactacacatgattgcggctgttgctgctgggatttgacctttgcaagtaattcctttatctgacttcctgtaagtgtctc |
48130886 |
T |
|
| Q |
224 |
atgctccataagagcatttgcaagcgcatgaagctccttttcatgggtggttataatagtttttgcatttttgtaagctctgtcaagcaatttcttcact |
323 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||||| ||||||||||||| |||| ||||||||| ||||||||||| |||||||| ||||||||| |
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|
| T |
48130887 |
atgctccagaagagcatttgcaagtgcatgaagctccttgtcatgggtggttagaataaattttgcattgttgtaagctctctcaagcaagttcttcact |
48130986 |
T |
|
| Q |
324 |
tctttctcaataagcagcctagtttctgtgctc |
356 |
Q |
| |
|
||||||||||||||||| |||||||||| |||| |
|
|
| T |
48130987 |
tctttctcaataagcagtctagtttctgagctc |
48131019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 119 - 356
Target Start/End: Original strand, 48121835 - 48122072
Alignment:
| Q |
119 |
ggactgtgaacttccttgagcttcgactacacatgattgcggctgttgctgcggggatttgacttttgcaagtaattcctttatctgacttcctgtaagt |
218 |
Q |
| |
|
|||| |||||||||| ||| ||||| ||||| || ||||||||||||||| ||||||| || |||||||||| |||||||||||||||||||||||| |
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|
| T |
48121835 |
ggaccgtgaacttccctgaacttcggctacatgtggctgcggctgttgctgctgggatttaacctttgcaagtatatcctttatctgacttcctgtaagt |
48121934 |
T |
|
| Q |
219 |
gtctcatgctccataagagcatttgcaagcgcatgaagctccttttcatgggtggttataatagtttttgcatttttgtaagctctgtcaagcaatttct |
318 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||| |||| |
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|
| T |
48121935 |
gtctcatgctccagaagagcatttgcaagtgcatgaagctccttttcatgggtggttagaatagcttttgcattgttgtaagctctgtcaagcaagttct |
48122034 |
T |
|
| Q |
319 |
tcacttctttctcaataagcagcctagtttctgtgctc |
356 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
48122035 |
tcacttctttctcaataagaagcctagtttctgagctc |
48122072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 112 - 356
Target Start/End: Original strand, 48111854 - 48112098
Alignment:
| Q |
112 |
ctggattggactgtgaacttccttgagcttcgactacacatgattgcggctgttgctgcggggatttgacttttgcaagtaattcctttatctgacttcc |
211 |
Q |
| |
|
||||||||| | | ||| |||| |||| ||||||||||| ||| |||| || ||||| ||||| | || ||||||| ||| |||||||| |||||||| |
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|
| T |
48111854 |
ctggattgggccgagaatttccctgagattcgactacacttgactgcgcttggggctgctgggatctaacctttgcaactaaatcctttatttgacttcc |
48111953 |
T |
|
| Q |
212 |
tgtaagtgtctcatgctccataagagcatttgcaagcgcatgaagctccttttcatgggtggttataatagtttttgcatttttgtaagctctgtcaagc |
311 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||| || || |
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|
| T |
48111954 |
tgtaagtgtctcatgctccagaagagcatttgcaagcgcatgaagctccttttcatgggtggttagaatagttttagcattgttgtaagctctctccagt |
48112053 |
T |
|
| Q |
312 |
aatttcttcacttctttctcaataagcagcctagtttctgtgctc |
356 |
Q |
| |
|
|| ||||||||||||||||||||||||| || ||||||| |||| |
|
|
| T |
48112054 |
aagttcttcacttctttctcaataagcaatctggtttctgagctc |
48112098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 125; Significance: 3e-64; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 112 - 356
Target Start/End: Complemental strand, 32014675 - 32014431
Alignment:
| Q |
112 |
ctggattggactgtgaacttccttgagcttcgactacacatgattgcggctgttgctgcggggatttgacttttgcaagtaattcctttatctgacttcc |
211 |
Q |
| |
|
||||||||||| || |||||| ||||||| |||| |||||| ||| | |||| |||| |||||||||| ||||||||||| || || ||||||||||| |
|
|
| T |
32014675 |
ctggattggaccttggacttccctgagctttgactggacatgactgctgttgtttctgctgggatttgacctttgcaagtaaatctttaatctgacttcc |
32014576 |
T |
|
| Q |
212 |
tgtaagtgtctcatgctccataagagcatttgcaagcgcatgaagctccttttcatgggtggttataatagtttttgcatttttgtaagctctgtcaagc |
311 |
Q |
| |
|
||||||||||||||||| || |||||| |||||||| ||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||| || ||| |
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|
| T |
32014575 |
tgtaagtgtctcatgcttcaaaagagcttttgcaagtacatgaagctccttttgatgggtggttagaatagtttttgcattgttgtaagctctctcgagc |
32014476 |
T |
|
| Q |
312 |
aatttcttcacttctttctcaataagcagcctagtttctgtgctc |
356 |
Q |
| |
|
|| ||||||||||| ||||||||||||| ||||||||||| |||| |
|
|
| T |
32014475 |
aaattcttcacttccttctcaataagcaacctagtttctgagctc |
32014431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 112 - 356
Target Start/End: Complemental strand, 32035917 - 32035676
Alignment:
| Q |
112 |
ctggattggactgtgaacttccttgagcttcgactacacatgattgcggctgttgctgcggggatttgacttttgcaagtaattcctttatctgacttcc |
211 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||| ||| ||| || || | |||||||||| ||||||||||| | || ||||||| ||| |
|
|
| T |
32035917 |
ctggattggactgtgaacttccctgagctttgactacacgtgactgccactt---cttccgggatttgacatttgcaagtaaatttttaatctgacgtcc |
32035821 |
T |
|
| Q |
212 |
tgtaagtgtctcatgctccataagagcatttgcaagcgcatgaagctccttttcatgggtggttataatagtttttgcatttttgtaagctctgtcaagc |
311 |
Q |
| |
|
||||||||||| || || || |||||| ||||||||| ||||||||||||||| ||||||||||| |||| ||| |||||| ||||||||||| |||||| |
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|
| T |
32035820 |
tgtaagtgtctgattcttcagaagagcctttgcaagcacatgaagctccttttgatgggtggttagaataatttatgcattgttgtaagctctctcaagc |
32035721 |
T |
|
| Q |
312 |
aatttcttcacttctttctcaataagcagcctagtttctgtgctc |
356 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
32035720 |
aaattcttcacttctttctcaataagcagcctagtttctgagctc |
32035676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 183 - 356
Target Start/End: Complemental strand, 32025848 - 32025675
Alignment:
| Q |
183 |
tttgcaagtaattcctttatctgacttcctgtaagtgtctcatgctccataagagcatttgcaagcgcatgaagctccttttcatgggtggttataatag |
282 |
Q |
| |
|
||||||||||| || || ||||| ||||||||||||||| ||||| || |||||| |||| |||| ||||||||||||||| ||||||||||| ||||| |
|
|
| T |
32025848 |
tttgcaagtaaatctttaatctgttttcctgtaagtgtctgatgcttcagaagagcctttgtaagcacatgaagctccttttgatgggtggttagaatag |
32025749 |
T |
|
| Q |
283 |
tttttgcatttttgtaagctctgtcaagcaatttcttcacttctttctcaataagcagcctagtttctgtgctc |
356 |
Q |
| |
|
|||||||||| ||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
32025748 |
tttttgcattgttgcaagctctctcaagcaaattcttcacttctttctcaataagcagcctagtttctgagctc |
32025675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 112 - 356
Target Start/End: Complemental strand, 31794522 - 31794276
Alignment:
| Q |
112 |
ctggattggactgtgaacttccttgagcttcgactacacatgattgcggctgttgctgcggggatttgacttttgcaagtaattcctttatctgacttcc |
211 |
Q |
| |
|
||||||||||| ||||||||| | ||||| |||||||| ||| ||| ||| ||||| ||||||||| ||| ||||||| || | |||| | | || |
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|
| T |
31794522 |
ctggattggaccatgaacttcccttagctttgactacacgtgactgccgcttctgctg---ggatttgacatttacaagtaaatctctaatcttagt-cc |
31794427 |
T |
|
| Q |
212 |
tgtaagtgtctcatgctccataagagcatttgcaagcgcatgaagctccttttcatgggtggttataatagtttttgcatttttgtaagctc------tg |
305 |
Q |
| |
|
|||||||||| ||||| || |||||| ||||||| | ||||||||||||||| ||||||||||| ||||||||||||||| |||||||||| | |
|
|
| T |
31794426 |
agtaagtgtctgatgcttcagaagagcctttgcaaacacatgaagctccttttgatgggtggttagaatagtttttgcattgttgtaagctctctcaatc |
31794327 |
T |
|
| Q |
306 |
tcaagcaatttcttcacttctttctcaataagcagcctagtttctgtgctc |
356 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
31794326 |
tcaagcaaattcttcccttctttctcaataagcagcctagtttctgagctc |
31794276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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