View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4793_low_14 (Length: 334)

Name: NF4793_low_14
Description: NF4793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4793_low_14
NF4793_low_14
[»] chr3 (1 HSPs)
chr3 (21-317)||(47156679-47156975)


Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 21 - 317
Target Start/End: Complemental strand, 47156975 - 47156679
Alignment:
Q  21 agcagagaatagacgggtccttgtccttctttaccattataacaatcacgcaatattgaaggtgttatatatgtatatctcctccctactgcaacgtgac 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47156975 agcagagaatagacgggtccttgtccttctttaccattataacaatcacgcaatattgaaggtgttatatatgtatatctcctccctactgcaacgtgac 47156876  T
Q  121 aattcgaattgtctcgtcactttaattctgcttcaaaatcagattctgattcagtatataggggccactccatttcaattcaattttatagtcctagatt 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47156875 aattcgaattgtctcgtcactttaattctgcttcaaaatcagattttgattcagtatataggggccactccatttcaattcaattttatagtcctagatt 47156776  T
Q  221 ctttcttttttctggtattcaatgttatgttgaagtatgtaacatttattatttatatttacagtcatcctttttcatttaattttcactgaaaagg 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  47156775 ctttcttttttctggtattcaatgttatgttgaagtatgtaacatttattatttatatttacagccatcctttttcatttaattttcactgaaaagg 47156679  T

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