View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4793_low_15 (Length: 330)
Name: NF4793_low_15
Description: NF4793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4793_low_15 |
 | |
|
| [»] scaffold0004 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0004 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 10 - 312
Target Start/End: Original strand, 376069 - 376371
Alignment:
| Q |
10 |
attatacttacaaggagcatggccaatcagtttaaaaatgtagagaatgtttgtttgtacattatgtgatatatacccaattacccattttagtatagtt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
376069 |
attatacttacaaggagcatggccaatcagtttaaaaatgtagagaatgtttgtttgtacattatgtgatatatacccaattacccattttagtatagtt |
376168 |
T |
|
| Q |
110 |
ccaacccttcaagaactgcttgtagcttttgaattttggaaaacaaccacattgtttagaatttggagatcaagaatgaaagttgagtttacaaaatgat |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
376169 |
ccaacccttcaagaactgcttgtagcttttgaattttggaaaacaaccacattgtttagaatttggagatcaagaatgaaagttgagtttacaaaatgat |
376268 |
T |
|
| Q |
210 |
ctttttagcatatttcaatggcttaatgggtgctcccaccaaactgcaaatacaaaatagctgctaaagataagctccatacttttttggattttggttc |
309 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
376269 |
atttgtagcatatttcaatggcttaatgggtgctcgcaccaaactgaaaatacaaaatagctgctaaagataagctccatacttttttggattttggttc |
376368 |
T |
|
| Q |
310 |
atg |
312 |
Q |
| |
|
||| |
|
|
| T |
376369 |
atg |
376371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University