View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4793_low_18 (Length: 323)
Name: NF4793_low_18
Description: NF4793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4793_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 16 - 305
Target Start/End: Original strand, 8552145 - 8552435
Alignment:
| Q |
16 |
acagacagacacagtttgcacagtctaattctatgcttttttaatttctctcctttaacggacctgttgcttgccctatttatttttatgcaatttctta |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8552145 |
acagacagacacagtttgcacagtctaattctatgcttttttaatttctctcctttaacggacctgttgcttgccctatttatttttatgcaatttctta |
8552244 |
T |
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| Q |
116 |
gtcatatccttctgtcatttacacacacataaaatgctcagagatacataaaataaagctgtatctctatctctatactatagcataagaagatattaat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8552245 |
gtcatatccttctgtcatttacacacacataaaatgctcagagatacataaaataaagctgtatctctatctctatactatagcataagaagatattaat |
8552344 |
T |
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| Q |
216 |
aatatgaatcagacaatgag-nnnnnnngaaaaccaaacttgccgtacaagttgtcagttccttaagaccacaccactgacaaaaatggct |
305 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
8552345 |
aatatgaatcagacaatgagaaaaaaaagaaaaccaaacttgccgtacaagttgtcagttccttaagaccacaccactgacaaagatggct |
8552435 |
T |
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