View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4793_low_28 (Length: 239)

Name: NF4793_low_28
Description: NF4793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4793_low_28
NF4793_low_28
[»] chr4 (2 HSPs)
chr4 (18-105)||(22616700-22616787)
chr4 (181-239)||(22616868-22616926)
[»] chr7 (4 HSPs)
chr7 (18-105)||(21890774-21890861)
chr7 (18-105)||(46007825-46007912)
chr7 (181-231)||(21890934-21890984)
chr7 (181-231)||(46007702-46007752)
[»] chr3 (2 HSPs)
chr3 (18-105)||(41049528-41049615)
chr3 (181-231)||(41049406-41049456)
[»] chr1 (1 HSPs)
chr1 (181-239)||(13621369-13621428)
[»] chr2 (2 HSPs)
chr2 (46-105)||(39644459-39644518)
chr2 (183-224)||(39644323-39644364)


Alignment Details
Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 22616700 - 22616787
Alignment:
Q  18 gtttaagatcatcatcgtaatcattcaaattgaaatttatgtcagcaccaactcccctaaacttaatagcagctcgatcgtaggctct 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  22616700 gtttaagatcatcatcgtaatcattcaaattgaaatttatgtcagcaccaactcccctaaacttaatagcagctcgatcataggctct 22616787  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 181 - 239
Target Start/End: Original strand, 22616868 - 22616926
Alignment:
Q  181 gatttacctagcagcagcatgagctgtgtcaaatccacctacaaaattcaaccacaaat 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22616868 gatttacctagcagcagcatgagctgtgtcaaatccacctacaaaattcaaccacaaat 22616926  T

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Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 21890774 - 21890861
Alignment:
Q  18 gtttaagatcatcatcgtaatcattcaaattgaaatttatgtcagcaccaactcccctaaacttaatagcagctcgatcgtaggctct 105  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||| ||||||||    
T  21890774 gtttaagatcatcatcataatcattcaaattgaaatttatgtcagcaccaactcccctgaatttaatcgcagctcgatcataggctct 21890861  T

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Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 46007912 - 46007825
Alignment:
Q  18 gtttaagatcatcatcgtaatcattcaaattgaaatttatgtcagcaccaactcccctaaacttaatagcagctcgatcgtaggctct 105  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||| ||||||||    
T  46007912 gtttaagatcatcatcataatcattcaaattgaaatttatgtcagcaccaactcccctaaatttaatcgcagcttgatcataggctct 46007825  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 181 - 231
Target Start/End: Original strand, 21890934 - 21890984
Alignment:
Q  181 gatttacctagcagcagcatgagctgtgtcaaatccacctacaaaattcaa 231  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  21890934 gatttacctagcagcagcatgagctgtgtcaaatccacctacaaaaatcaa 21890984  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 181 - 231
Target Start/End: Complemental strand, 46007752 - 46007702
Alignment:
Q  181 gatttacctagcagcagcatgagctgtgtcaaatccacctacaaaattcaa 231  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  46007752 gatttacctagcagcagcatgaactgtgtcaaatccacctacaaaaatcaa 46007702  T

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Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 41049615 - 41049528
Alignment:
Q  18 gtttaagatcatcatcgtaatcattcaaattgaaatttatgtcagcaccaactcccctaaacttaatagcagctcgatcgtaggctct 105  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||| ||||||||    
T  41049615 gtttaagatcatcatcataatcattcaaattgaaatttatgtcagcaccaactcccctgaatttaatcgcagctcgatcataggctct 41049528  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 181 - 231
Target Start/End: Complemental strand, 41049456 - 41049406
Alignment:
Q  181 gatttacctagcagcagcatgagctgtgtcaaatccacctacaaaattcaa 231  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  41049456 gatttacctagcagcagcatgagctgtgtcaaatccacctacaaaaatcaa 41049406  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 181 - 239
Target Start/End: Complemental strand, 13621428 - 13621369
Alignment:
Q  181 gatttacctagcagcag-catgagctgtgtcaaatccacctacaaaattcaaccacaaat 239  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||    
T  13621428 gatttacctagcagcaggcatgagctgtgtcaaatccacctacaaaaatcaaacacaaat 13621369  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 46 - 105
Target Start/End: Complemental strand, 39644518 - 39644459
Alignment:
Q  46 attgaaatttatgtcagcaccaactcccctaaacttaatagcagctcgatcgtaggctct 105  Q
    ||||||||| ||||||||| ||| |||||||||||| |||||||||||||| ||||||||    
T  39644518 attgaaattaatgtcagcatcaagtcccctaaactttatagcagctcgatcataggctct 39644459  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 39644364 - 39644323
Alignment:
Q  183 tttacctagcagcagcatgagctgtgtcaaatccacctacaa 224  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  39644364 tttacctagcagcagcatgagccgtgtcaaatccacctacaa 39644323  T

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