View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4793_low_29 (Length: 239)
Name: NF4793_low_29
Description: NF4793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4793_low_29 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 42532616 - 42532394
Alignment:
| Q |
17 |
agtgatgatagtaaaataaagggaaaacaaataatcataataattttgtataaatatatgatatgactactgttgaatgaatagtgatgatatgaattat |
116 |
Q |
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| T |
42532616 |
agtgatgatagtaaaataaagggaaaacaaataatcataataattttgtataaatatatgatatgactactgttgaatgaatagtgatgatatgaattat |
42532517 |
T |
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| Q |
117 |
ctagtctagtatgtcctggtgtgtagtggattgtagtttaggacgttttttgttcaaatgacacatgaggttaaagtcaagtgcacagtaacacaggtgt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
42532516 |
ctagtctagtatgtcctggtgtgtagtggattgtagtttaggacgttttttgttcaaatgacacatgaggttaaagtcaagtacacagtaacacaggtgt |
42532417 |
T |
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| Q |
217 |
agtgaaatttgagactacctacc |
239 |
Q |
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|||||| |||||||||||||||| |
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| T |
42532416 |
agtgaattttgagactacctacc |
42532394 |
T |
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