View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4793_low_5 (Length: 425)
Name: NF4793_low_5
Description: NF4793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4793_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 37 - 415
Target Start/End: Original strand, 44566892 - 44567270
Alignment:
| Q |
37 |
tgatctatgaaatgtttacagtatgctaagtcaaaattgaaatgatatatataatcattgtactttgttgttgaggttcatttgttttaaccttgtaggt |
136 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44566892 |
tgatctatgaaatgtttacagtatgctaagtcaaaattgaaatgatatatataatcattgtactttgttgttgaggttcatttgttttaaccttgtaggt |
44566991 |
T |
|
| Q |
137 |
tggcacatatcacacttcttcacttttagcagcatctggacctccaactcctggggttctaagtcgcggtattggtctagaaggtttttctagtttgttg |
236 |
Q |
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| T |
44566992 |
tggcacatatcacacttcttcacttttagcagcatctggacctccaactcctggggttcttagtcgcggtattggtctagaaggtttttctagtttgttg |
44567091 |
T |
|
| Q |
237 |
gctggtctctggggtactggaatgggatcaacaactctaaccgaaaatgttcacacaattgctgggacaaaaatgggaagccgcagaccagttcaattgg |
336 |
Q |
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| T |
44567092 |
gctggtctctggggtactggaatgggatcaacaactctaaccgaaaatgttcacacaattgctgggacaaaaatgggaagccgcagaccagttcaattgg |
44567191 |
T |
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| Q |
337 |
gtgcgtgtcttctcatagtattatctctatttggtaagtatctattatcattctgttgttgcatttgcatctacctttg |
415 |
Q |
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| T |
44567192 |
gtgcgtgtcttctcatagtattatctctatttggtaagtatctattatcattctgttgttgcatttgcatctacctttg |
44567270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 119 - 385
Target Start/End: Complemental strand, 36031769 - 36031503
Alignment:
| Q |
119 |
tgttttaaccttgtaggttggcacatatcacacttcttcacttttagcagcatctggacctccaactcctggggttctaagtcgcggtattggtctagaa |
218 |
Q |
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| T |
36031769 |
tgttttaactttgtaggttggctcatatcatgcatcttcattattagtagcatctagacctccaactcctggggttcttagtcgcggaattggtctggaa |
36031670 |
T |
|
| Q |
219 |
ggtttttctagtttgttggctggtctctggggtactggaatgggatcaacaactctaaccgaaaatgttcacacaattgctgggacaaaaatgggaagcc |
318 |
Q |
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||| |||||||| | ||||||||||||||||||||||||| ||||| || ||| |||| ||||||||||| |||||||||| ||| ||||||||||||| |
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| T |
36031669 |
ggtctttctagtgttttggctggtctctggggtactggaactggatctaccactttaactgaaaatgttcatacaattgctgtgactaaaatgggaagcc |
36031570 |
T |
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| Q |
319 |
gcagaccagttcaattgggtgcgtgtcttctcatagtattatctctatttggtaagtatctattatc |
385 |
Q |
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||||| |||||||||||||||| ||| |||| ||||| |||||||| | ||||||||||||||||| |
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| T |
36031569 |
gcagagcagttcaattgggtgcatgtattctgatagtgttatctctcgtgggtaagtatctattatc |
36031503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 175 - 319
Target Start/End: Original strand, 20124129 - 20124273
Alignment:
| Q |
175 |
gacctccaactcctggggttctaagtcgcggtattggtctagaaggtttttctagtttgttggctggtctctggggtactggaatgggatcaacaactct |
274 |
Q |
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|||||||||||||||| ||||| ||||| || |||||| | |||||| ||| |||| | ||||||||||||||||| ||||||| ||||| |||||| | |
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| T |
20124129 |
gacctccaactcctggagttcttagtcgaggaattggtttggaaggtctttgtagtgtcttggctggtctctggggaactggaactggatctacaacttt |
20124228 |
T |
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| Q |
275 |
aaccgaaaatgttcacacaattgctgggacaaaaatgggaagccg |
319 |
Q |
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||||||||||||||| |||||||| | ||| |||||||||||||| |
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| T |
20124229 |
aaccgaaaatgttcatacaattgccgtgactaaaatgggaagccg |
20124273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 326 - 401
Target Start/End: Complemental strand, 16069436 - 16069361
Alignment:
| Q |
326 |
agttcaattgggtgcgtgtcttctcatagtattatctctatttggtaagtatctattatcattctgttgttgcatt |
401 |
Q |
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||||||||| ||||| |||||||| | |||||||||||| |||| |||||||||||||||||| ||||||| |||| |
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| T |
16069436 |
agttcaattaggtgcatgtcttctgacagtattatctctctttgctaagtatctattatcattttgttgtttcatt |
16069361 |
T |
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