View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4793_low_8 (Length: 390)
Name: NF4793_low_8
Description: NF4793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4793_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 6e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 114 - 381
Target Start/End: Original strand, 78718 - 78984
Alignment:
| Q |
114 |
gccagtgcccttgaaaccgaatcctgtatctgagttggagaagattgtcaacaagttgcgagtgaaatataggagatatctcatagagtttgatgttgaa |
213 |
Q |
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| T |
78718 |
gccagtgcccttgaaacagattcttgtatcagagttggagaagattgtcaataagttgcgggtgaaatataggacatatctcatagagtttgatgttgaa |
78817 |
T |
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| Q |
214 |
catgtgagctaattatacgacgtggcctcaacttgcataattcgtgtattcttttcattattgagttgattatgatagctgtgtgtcctttagggatgat |
313 |
Q |
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| T |
78818 |
catgtgagctaattataggacgtgacctcaccttgcataattcgtgtattcttttcattattgcgttgattatgatagcagtgtgtcctttagggatgat |
78917 |
T |
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| Q |
314 |
ctttttgagcttannnnnnnncttcttatctc-ttctactgattttgaacaatctgtttttgccctatg |
381 |
Q |
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| T |
78918 |
ctttttgagcttattttttt--ttcttatctctttctcctgattttgaacaatctgtttttgccttatg |
78984 |
T |
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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 132 - 209
Target Start/End: Complemental strand, 24468196 - 24468119
Alignment:
| Q |
132 |
gaatcctgtatctgagttggagaagattgtcaacaagttgcgagtgaaatataggagatatctcatagagtttgatgt |
209 |
Q |
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| T |
24468196 |
gaatcctgtatctgagttggacaagattgtcaatgagttgcgggtgaaatataggacatatcacatagagtttaatgt |
24468119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 164102 - 164023
Alignment:
| Q |
133 |
aatcctgtatctgagttggagaagattgtcaacaagttgcgagtgaaatataggagatatctcatagagtttgatgttgaa |
213 |
Q |
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|||| ||||||||||||||| |||||| |||| ||||||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
164102 |
aatcatgtatctgagttggacaagattatcaatgagttgcg-gtgaaatataggacctatctcatagagtttgatgttgaa |
164023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 18208307 - 18208386
Alignment:
| Q |
133 |
aatcctgtatctgagttggagaagattgtcaacaagttgcgagtgaaatataggagatatctcatagagtttgatgttgaa |
213 |
Q |
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|||| ||||||||||||||| |||||| |||| ||||||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
18208307 |
aatcatgtatctgagttggacaagattatcaatgagttgcg-gtgaaatataggacctatctcatagagtttgatgttgaa |
18208386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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