View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4793_low_9 (Length: 383)
Name: NF4793_low_9
Description: NF4793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4793_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 19 - 374
Target Start/End: Complemental strand, 29770005 - 29769650
Alignment:
| Q |
19 |
agaattcacaaaacaaaaaagagtgttcattctcaacaaattctcatctcatcattatgactaacatgagagtagttctcatcactctccccatggtgtt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29770005 |
agaattcacaaaacaaaaaagagtgttcattctcaacaaattctcatctcatcattatgactaacatgagagtagttctcatcactctccccatggtgtt |
29769906 |
T |
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| Q |
119 |
tgtcaccatcataagcttggttgttacaatgagagttcaagctgcatctcgtgctttctttgtttttggtgactcacttgttgacagtggcaacaataat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29769905 |
tgtcaccatcataagcttggttgttacaatgagagttcaagctgcatctcgtgctttctttgtttttggtgactcacttgttgacagtggcaacaataat |
29769806 |
T |
|
| Q |
219 |
tatttgctaaccacggcacgtgccgactctcctccttatggcatcgattatcccggtcatcgtcccaccggtcgcttctccaatggtgtcaacctccctg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29769805 |
tatttgctaaccacggcacgtgccgactctcctccttatggcatcgattatcccggtcatcgtcccaccggtcgcttctccaatggtgtcaacctccctg |
29769706 |
T |
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| Q |
319 |
accttatcggtaagtaacatcaacttcatctttagttagttcttctagagtataat |
374 |
Q |
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| T |
29769705 |
accttatcggtaagtaacatcaacttcatctttagttagttcttctagagtataat |
29769650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 171 - 271
Target Start/End: Original strand, 48100337 - 48100437
Alignment:
| Q |
171 |
gctttctttgtttttggtgactcacttgttgacagtggcaacaataattatttgctaaccacggcacgtgccgactctcctccttatggcatcgattatc |
270 |
Q |
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| T |
48100337 |
gctttctttgtatttggtgattcacttgttgacagtggcaacaacaattatttggtaactactgctagggctgattctcctccttatggaattgattatc |
48100436 |
T |
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| Q |
271 |
c |
271 |
Q |
| |
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| |
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|
| T |
48100437 |
c |
48100437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 177 - 326
Target Start/End: Original strand, 48074379 - 48074528
Alignment:
| Q |
177 |
tttgtttttggtgactcacttgttgacagtggcaacaataattatttgctaaccacggcacgtgccgactctcctccttatggcatcgattatcccggtc |
276 |
Q |
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|||||||||||||| ||||||||||||| |||||||||||| || || |||||| || ||||| || ||| ||||||||||| |||||||| || |
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| T |
48074379 |
tttgtttttggtgattcacttgttgacaatggcaacaataactacttagcaaccactgctcgtgctgattcttacccttatggcattgattatccaactc |
48074478 |
T |
|
| Q |
277 |
atcgtcccaccggtcgcttctccaatggtgtcaacctccctgaccttatc |
326 |
Q |
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| ||| |||| || |||||||||||||| ||||| | |||||||||||| |
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| T |
48074479 |
accgtgccactggacgcttctccaatggcctcaacatgcctgaccttatc |
48074528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 271
Target Start/End: Original strand, 1807235 - 1807335
Alignment:
| Q |
171 |
gctttctttgtttttggtgactcacttgttgacagtggcaacaataattatttgctaaccacggcacgtgccgactctcctccttatggcatcgattatc |
270 |
Q |
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||||| ||||| ||||| || ||||||||||| | ||| || || ||||||||||| || || || ||||| || |||||||||||||| || ||||||| |
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| T |
1807235 |
gctttttttgtatttggagattcacttgttgataatggaaataacaattatttgcttacaactgctcgtgctgattctcctccttatggaattgattatc |
1807334 |
T |
|
| Q |
271 |
c |
271 |
Q |
| |
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| |
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| T |
1807335 |
c |
1807335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 168 - 271
Target Start/End: Original strand, 48091426 - 48091529
Alignment:
| Q |
168 |
cgtgctttctttgtttttggtgactcacttgttgacagtggcaacaataattatttgctaaccacggcacgtgccgactctcctccttatggcatcgatt |
267 |
Q |
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|||||||||||||| |||||||| || |||||||| | ||| ||||||||||| || ||| || || || || || |||||||||||||||| |||| |
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| T |
48091426 |
cgtgctttctttgtgtttggtgattctcttgttgataatggtaacaataattacttagcaactactgctcgagctgatgctcctccttatggcattgatt |
48091525 |
T |
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| Q |
268 |
atcc |
271 |
Q |
| |
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|||| |
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| T |
48091526 |
atcc |
48091529 |
T |
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