View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4794-Insertion-1 (Length: 331)
Name: NF4794-Insertion-1
Description: NF4794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4794-Insertion-1 |
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| [»] chr2 (7 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 7 - 331
Target Start/End: Complemental strand, 40923353 - 40923028
Alignment:
| Q |
7 |
accaaaagcctctgctctccctcagcacagaatcctaataacttgacaagatttgggtgttctgccaaactaagtgttaacacttcaacagcaaattctc |
106 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40923353 |
accaaaagcctctgctctccctcagcacaaaatcctaataacttgacaagatttgggtgttctgccaaactaagtgttaacacttcaacagcaaattctc |
40923254 |
T |
|
| Q |
107 |
ttgttccttgaagtccattagggtcaagttgctttattgcaacaaactacaccaacaataaa-tgcctcaaattaacatgaaaaccatttagcaaagaac |
205 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40923253 |
ttgttccttgaagtccattagggtcaagttgctttattgcaacaaactacaccaacaataaaatgcctcaaattaacatgaaaaccatttagcaaagaac |
40923154 |
T |
|
| Q |
206 |
atgaatgtataagtgtaaggcactgtaaaagttctcttatttcatttcttttaagagaacaatttttaacgaacctgattaattttctcgatgtaaccct |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
40923153 |
atgaatgtataagtgtaaggcactgtaaaagttctcttatttcatttcttttaagagaacaatttttaacaaacctgattaattttcttgatgtaaccct |
40923054 |
T |
|
| Q |
306 |
tataaaccttgccaaaccctccttca |
331 |
Q |
| |
|
|||||||||||||||||||||||||| |
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| T |
40923053 |
tataaaccttgccaaaccctccttca |
40923028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 7 - 213
Target Start/End: Complemental strand, 40933214 - 40933007
Alignment:
| Q |
7 |
accaaaagcctctgctctccctcagcacagaatcctaataacttgacaagatttgggtgttctgccaaactaagtgttaacacttcaacagcaaattctc |
106 |
Q |
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||||||||||| || || |||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
40933214 |
accaaaagcctttgatccccctcagcaccaaaccctaataacttgacaagatttgtgtgttctgccaaactaagtgttaacacttcaacaacaaattctc |
40933115 |
T |
|
| Q |
107 |
ttgttccttgaagtccattagggtcaagttgctttattgcaacaaactacaccaacaat-aaatgcctcaaattaacatgaaaaccatttagcaaagaac |
205 |
Q |
| |
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| |||||||||| || |||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||| |||||||||| ||| ||||||| |
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| T |
40933114 |
tagttccttgaatgcctttagggtcaagttgctttattgcaacaaactacaccaacagtaaaatgcttcaaattaagatgaaaaccacttactaaagaac |
40933015 |
T |
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| Q |
206 |
atgaatgt |
213 |
Q |
| |
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|||||||| |
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| T |
40933014 |
atgaatgt |
40933007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 218 - 331
Target Start/End: Complemental strand, 40932977 - 40932864
Alignment:
| Q |
218 |
gtgtaaggcactgtaaaagttctcttatttcatttcttttaagagaacaatttttaacgaacctgattaattttctcgatgtaacccttataaaccttgc |
317 |
Q |
| |
|
|||||||||| || ||||||||| | ||||||||||||||||||| ||||||||||| ||||||||||| |||||| || |||||||||||||||||||| |
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| T |
40932977 |
gtgtaaggcattgcaaaagttctatgatttcatttcttttaagagcacaatttttaaggaacctgattagttttctggaggtaacccttataaaccttgc |
40932878 |
T |
|
| Q |
318 |
caaaccctccttca |
331 |
Q |
| |
|
|||||||||||||| |
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| T |
40932877 |
caaaccctccttca |
40932864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 31 - 168
Target Start/End: Complemental strand, 40906688 - 40906551
Alignment:
| Q |
31 |
gcacagaatcctaataacttgacaagatttgggtgttctgccaaactaagtgttaacacttcaacagcaaattctcttgttccttgaagtccattagggt |
130 |
Q |
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||||| || |||||||||||||||||||||||||| ||||| |||| ||||||| |||||||||| ||||||| || ||||||||| || ||| | | |
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| T |
40906688 |
gcacaaaaccctaataacttgacaagatttgggtggtctgctaaacctagtgttatcacttcaacaacaaattccctgattccttgaaccccgttacgat |
40906589 |
T |
|
| Q |
131 |
caagttgctttattgcaacaaactacaccaacaataaa |
168 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||| |
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| T |
40906588 |
caagttgctttattgcaacaacctacatcaacaataaa |
40906551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 7 - 168
Target Start/End: Complemental strand, 40940852 - 40940691
Alignment:
| Q |
7 |
accaaaagcctctgctctccctcagcacagaatcctaataacttgacaagatttgggtgttctgccaaactaagtgttaacacttcaacagcaaattctc |
106 |
Q |
| |
|
||||| ||||| || |||||||||||||| || || | ||||||||||||||||||||||||||| ||||| ||| ||||| ||||| | |||||| | |
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| T |
40940852 |
accaacagcctttgttctccctcagcacaaaacccaattaacttgacaagatttgggtgttctgctaaactgagtcttaacgcttcagaaacaaatttcc |
40940753 |
T |
|
| Q |
107 |
ttgttccttgaagtccattagggtcaagttgctttattgcaacaaactacaccaacaataaa |
168 |
Q |
| |
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|| |||||||||| | |||||||||| |||||||||| ||||| |||||||||||||||| |
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|
| T |
40940752 |
tttttccttgaagcacgatagggtcaagctgctttattgtaacaacctacaccaacaataaa |
40940691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 264 - 331
Target Start/End: Complemental strand, 40906468 - 40906401
Alignment:
| Q |
264 |
acaatttttaacgaacctgattaattttctcgatgtaacccttataaaccttgccaaaccctccttca |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
40906468 |
acaatttttaacgaacctgattaattttctcgaggtaacccttataaaccttaccaaaccctccttca |
40906401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 262 - 331
Target Start/End: Complemental strand, 40940583 - 40940514
Alignment:
| Q |
262 |
gaacaatttttaacgaacctgattaattttctcgatgtaacccttataaaccttgccaaaccctccttca |
331 |
Q |
| |
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||||||||| |||||||||||||| ||||||||||||||||| | ||||||||| ||||||||| ||||| |
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| T |
40940583 |
gaacaatttataacgaacctgatttattttctcgatgtaaccttcataaacctttccaaaccctacttca |
40940514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 7 - 331
Target Start/End: Complemental strand, 55063173 - 55062854
Alignment:
| Q |
7 |
accaaaagcctctgctctccctcagcacagaatcctaataacttgacaagatttgggtgttctgccaaactaagtgttaacacttcaacagcaaattctc |
106 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
55063173 |
accaaaagcctctgctctccctcagcacaaaatcctaataacttgacaagatttgggtgttctgccaaaccaagtgttaacacttcaacaacaaattctc |
55063074 |
T |
|
| Q |
107 |
ttgttccttgaagtccattagggtcaagttgctttattgcaacaaactacaccaacaat-aaatgcctcaaattaacatgaaaaccatttagcaaagaac |
205 |
Q |
| |
|
| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| | |||||| |||||||||||||||||||| || ||||| ||| |
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|
| T |
55063073 |
tggttccttgaagtccagtagggtcaagttgctttattgcaacaacctacaccaacagtaaaatgcttcaaattaacatgaaaaccacttggcaaacaac |
55062974 |
T |
|
| Q |
206 |
atgaatgtataagtgtaaggcactgtaaaagttctcttatttcatttcttttaagagaacaatttttaacgaacctgattaattttctcgatgtaaccct |
305 |
Q |
| |
|
|||||| |||||||||| || ||||||||| | ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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|
| T |
55062973 |
atgaat------gtgtaaggcattgcaaaagttctatgatttcatttcttttaagagaatattttttaacgaacctgattaattttctcgatgtaaccct |
55062880 |
T |
|
| Q |
306 |
tataaaccttgccaaaccctccttca |
331 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
55062879 |
tataaaccttgccaaaccctccttca |
55062854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 7 - 151
Target Start/End: Complemental strand, 13172157 - 13172013
Alignment:
| Q |
7 |
accaaaagcctctgctctccctcagcacagaatcctaataacttgacaagatttgggtgttctgccaaactaagtgttaacacttcaacagcaaattctc |
106 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||| |
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|
| T |
13172157 |
accaaaagtctctgctctccctcagcacaaaatcctaataacttgacaagatttgggtgttctgtcaaatcaagtgttaacacttcaacaacaaattctc |
13172058 |
T |
|
| Q |
107 |
ttgttccttgaagtccattagggtcaagttgctttattgcaacaa |
151 |
Q |
| |
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| ||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
13172057 |
tggttccttgaagtccattagggtccagttgctttattgcaacaa |
13172013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 277 - 331
Target Start/End: Complemental strand, 13172014 - 13171961
Alignment:
| Q |
277 |
aacctgattaattttctcgatgtaacccttataaaccttgccaaaccctccttca |
331 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||||||||| ||||||||| |
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|
| T |
13172014 |
aacctgatta-ttttcttgatgtaacccttataaaccttgccaaatcctccttca |
13171961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 48553407 - 48553354
Alignment:
| Q |
5 |
acaccaaaagcctctgctctccctcagcacagaatcctaataacttgacaagat |
58 |
Q |
| |
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|||||||||||||||||||| ||||| |||| |||| | |||||||||||||| |
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| T |
48553407 |
acaccaaaagcctctgctcttcctcacaacagtatccaattaacttgacaagat |
48553354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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