View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4794_low_3 (Length: 228)
Name: NF4794_low_3
Description: NF4794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4794_low_3 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 9e-97; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 13 - 228
Target Start/End: Original strand, 6206748 - 6206955
Alignment:
| Q |
13 |
acaggtagttttaaggaatttattgaatactttgttgaggttatgggaacacgcccatctaaatcaccactgcattattaaattaaataacaaaacaagt |
112 |
Q |
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| T |
6206748 |
acaggcagttttaaggaatttattgaatactttgttgaggttatgggaacacgcccatctaaatcaccactgcattattaaattaaataacaaaacaagt |
6206847 |
T |
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| Q |
113 |
aaataattttatacttacacataaagcattgataatattgtcattgatgtgacagaccaatttataaagtttatcatacctgtatatccatatgcttata |
212 |
Q |
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| T |
6206848 |
aaataattttatacttatacataaagcattgataatattgtca--------acagaccaatttataaagtttatcatacctgtatatccatatgcttata |
6206939 |
T |
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| Q |
213 |
ccacttgatattaact |
228 |
Q |
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| T |
6206940 |
ccacttgatattaact |
6206955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 13 - 226
Target Start/End: Original strand, 6176938 - 6177141
Alignment:
| Q |
13 |
acaggtagttttaaggaatttattgaatactttgttgaggttatgggaacacgcccatctaaatcaccactgcattattaaattaaataacaaaacaagt |
112 |
Q |
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| T |
6176938 |
acaggcagttttaaggaatttattgaatactttgttgaggttataggaacacgtccatctatatctccactgcattatta--ttagataacaaaacaa-- |
6177033 |
T |
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| Q |
113 |
aaataattttatacttacacataaagcattgataatat-tgtcattgatgtgacagaccaatttataaagtttatcatacctgtatatccatatgcttat |
211 |
Q |
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| T |
6177034 |
-agtaatgttagac------ataaagcattgataatatctatttttgatgtgacagatcaatttataaagtatatcatacctgtatatccatatgcttat |
6177126 |
T |
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| Q |
212 |
accacttgatattaa |
226 |
Q |
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| T |
6177127 |
accacttgatattaa |
6177141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 6214443 - 6214523
Alignment:
| Q |
12 |
tacaggtagttttaaggaatttattgaatactttgttgaggttatgggaacacgcccatctaaatcaccactgcattatta |
92 |
Q |
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| T |
6214443 |
tacatgtagttttaaggaatttattgaatactttgttgagattatgggaacacgtccatctatatctccactgcattatta |
6214523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 226
Target Start/End: Original strand, 6214599 - 6214649
Alignment:
| Q |
174 |
ttataaagtttatcatacctgtatatccatatgcttataccacttgatattaa |
226 |
Q |
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| T |
6214599 |
ttataaactttat--tacctgtacatccaaatgcttataccacttgatattaa |
6214649 |
T |
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