View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4795-Insertion-1 (Length: 1020)
Name: NF4795-Insertion-1
Description: NF4795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4795-Insertion-1 |
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Alignment Details
Target: chr8 (Bit Score: 783; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 783; E-Value: 0
Query Start/End: Original strand, 8 - 976
Target Start/End: Original strand, 31787014 - 31787976
Alignment:
| Q |
8 |
gttacggcattttttgtaacacaaagttagaagtatacttaaaattttaaagacagaaactattactgctagttcaattgtaagaggatcatatcctgaa |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31787014 |
gttacggcattttttgtaacacaaagttagaagtatacttaaaattttaaagacagaaactattactgctagttcaattgtaagaggatcatatcctgaa |
31787113 |
T |
|
| Q |
108 |
ccagcagatgcaaaacacactccagttaagaggtcttcagtactcaaatttggatcaagataaggtggcatggcctccttaataccaaggtattcaactg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31787114 |
ccagcagatgcaaaacacactccagttaagaggtcttcagtactcaaatttggatcaagataaggtggcatggcctccttaataccaaggtattcaactg |
31787213 |
T |
|
| Q |
208 |
caattacatgaaaatactcaagcataacgaaccatgcaaggttttcgagttaaattagtttttagtccttataaattatctcaaaatttgtttctaatcc |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
31787214 |
caattacatgaaaatactcaagcataacgaaccatgcaaggttttcgagttaaattagtttttagtccttataaattatctcaaagtttgtttctaatcc |
31787313 |
T |
|
| Q |
308 |
atacaaattacaaaactgcatactttcagtccctcttagggatcaaaggtataataaggactnnnnnnnnnnnnnnnnnntcttaagagacgaaaatcat |
407 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
31787314 |
atacaaattacaaaactgcatactttcagtccctcttagggatcaaaggaataataaggactaaaaacaaaaaatgaaaatcttaagagacgaaaatcat |
31787413 |
T |
|
| Q |
408 |
atttaacacaataataagaagcatattagtgcatttagatgttagaactacgtacgaaaaacatctgaagggatttttccattgcaaaaccttcctgtcg |
507 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31787414 |
atttaacacaataataagaagcatattagtgcatttggatgttagaacaacgtacgaaaaacatctgaagggatttttccattgcaaaaccttcctgtcg |
31787513 |
T |
|
| Q |
508 |
cttttcctccaataaaatccctcccattcggtttgaaattcgccttcactattgttgaaatataattgttgttgcctgtatccaagattgaatcaccaaa |
607 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31787514 |
cttttcctccaataaaatccctcccattcggtttgaaattcgccttcactattgttgaaatataattgttgttgccagtatccaagattgaatcaccaaa |
31787613 |
T |
|
| Q |
608 |
tgccataacagcaggaaatgaatggtttttataaggaggttcatcaaatgtagctgtcacaacaaatggataaaacaaaactagaaaaggacaaacataa |
707 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31787614 |
tgccataacagcaggaaatgaatggtttttataaggaggttcatcaaatgtagctgtcacaacaaatggataaaacaaaactagaaaaggacaggcataa |
31787713 |
T |
|
| Q |
708 |
aaagatttaataagggtgaaaagcttcatcatgtgatttgaattgaatctcactcttttgattcaaccttgaagaatgttgatttataaagggtagggga |
807 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31787714 |
aaagatttaataagggtgaaaagcttcatcatgtgatttgaattgaatctcactcttttgattcaaccttgaagaatgttgatttataaagggta-ggga |
31787812 |
T |
|
| Q |
808 |
cttgtttgacacannnnnnnattacgtaggaactacgtaacactttaccttgttggtatcagctagctactttaacttgtcatggtaaaggtgctagcta |
907 |
Q |
| |
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||| ||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
31787813 |
cttatttgacacattttttca-tacgtaggaactacgtaacactttacc-tgttggtatcagctagctac-ttaac-tgtcatggtaaaggtgctagct- |
31787907 |
T |
|
| Q |
908 |
atttcttgttagctaagggaagattcaa-ggcccagttttcgattttctggactccactctcattgggtg |
976 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||| |||||||| |||| ||| |||||||||| |
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|
| T |
31787908 |
atttcttgttagctaagggaagattcaagggcacagttttcaattttctgaactctact-tcattgggtg |
31787976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 304; E-Value: 1e-170
Query Start/End: Original strand, 419 - 805
Target Start/End: Original strand, 31791978 - 31792365
Alignment:
| Q |
419 |
taataagaagcatattagt-gcatttagatgttagaactacgtacgaaaaacatctgaagggatttttccattgcaaaaccttcctgtcgcttttcctcc |
517 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
31791978 |
taataagaagcatattattagcatttagatgttagaactacgtacgaaaaacatctgaagggacttttccattgcaaaaccttcctgttgcttttcctcc |
31792077 |
T |
|
| Q |
518 |
aataaaatccctcccattcggtttgaaattcgccttcactattgttgaaatataattgttgttgcctgtatccaagattgaatcaccaaatgccataaca |
617 |
Q |
| |
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||||||||||||||| | ||||||||||| ||||||||||||||||||| ||| ||||||||||| ||||||||||| |||||||||||||| |||||| |
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| T |
31792078 |
aataaaatccctcccgtacggtttgaaatctgccttcactattgttgaaagatagttgttgttgccagtatccaagatcgaatcaccaaatgctataaca |
31792177 |
T |
|
| Q |
618 |
gcaggaaatgaatggtttttataaggaggttcatcaaatgtagctgtcacaacaaatggataaaacaaaactagaaaaggacaaacataaaaagatttaa |
717 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||| |||||| |
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| T |
31792178 |
gcaggaaatgaatggtttttataaggaggttcatcaaatgtagctgtcacatcaaatggataaaacaaaaccagaaaaggacagacataaaaatatttaa |
31792277 |
T |
|
| Q |
718 |
taagggtgaaaagcttcatcatgtgatttgaattgaatctcactcttttgattcaaccttgaagaatgttgatttataaagggtaggg |
805 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
31792278 |
taagagtgaaaagcttcatcatgtgatttgaattgaatctcactcttttgattcgaccttaaagaatgttgatttataaagggtaggg |
31792365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 8 - 307
Target Start/End: Original strand, 31791521 - 31791821
Alignment:
| Q |
8 |
gttacggcattttttgtaaca-caaagttagaagtatacttaaaattttaaagacagaaactattactgctagttcaattgtaagaggatcatatcctga |
106 |
Q |
| |
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|||| |||||||||| ||| | |||| |||||||||||| |||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
31791521 |
gttatggcattttttataaaaacaaatttagaagtatacctaaagttttaaagacagaaattattactcctagttcaattgtaagaggatcatatcctga |
31791620 |
T |
|
| Q |
107 |
accagcagatgcaaaacacactccagttaagaggtcttcagtactcaaatttggatcaagataaggtggcatggcctccttaataccaaggtattcaact |
206 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
31791621 |
accagcagatgcaaaacacactccagttaagaggtcttcagtactcaaatttggatcaagataaggtggcatggcctcctttataccaaggtattcaact |
31791720 |
T |
|
| Q |
207 |
gcaattacatgaaaatactcaagcataacgaaccatgcaaggttttcgagttaaattagtttttagtccttataaattatctcaaaatttgtttctaatc |
306 |
Q |
| |
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|||||||||||||||| || ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
31791721 |
gcaattacatgaaaattcttaagcataacgaaccatgcaagttttctgagttaaattagtttttagtccttataaatcatctcaaagtttgtttctaatc |
31791820 |
T |
|
| Q |
307 |
c |
307 |
Q |
| |
|
| |
|
|
| T |
31791821 |
c |
31791821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 303 - 369
Target Start/End: Original strand, 31791837 - 31791902
Alignment:
| Q |
303 |
aatccatacaaattacaaaactgcatactttcagtccctcttagggatcaaaggtataataaggact |
369 |
Q |
| |
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|||||||||||||| ||||||||||| | |||||||||||| |||||| || |||||||||||||| |
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|
| T |
31791837 |
aatccatacaaattgcaaaactgcatgc-ttcagtccctctcagggattgaatgtataataaggact |
31791902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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