View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4795-Insertion-11 (Length: 300)
Name: NF4795-Insertion-11
Description: NF4795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4795-Insertion-11 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 8 - 300
Target Start/End: Complemental strand, 29662561 - 29662269
Alignment:
| Q |
8 |
ataattgtagtattcctacatacaatgataacacatttacattgtgttcacttgggatgttgaagaaggtatatatatcattcattttagcttttcttcc |
107 |
Q |
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| T |
29662561 |
ataattgtagtattcctgcatacaatgataacacatttacatcgtgttcacttgggatgttgaagaaggtatatatatcattcattttaacttttcttcc |
29662462 |
T |
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| Q |
108 |
tgtagtgtaggatgttaatgtgtttcattaacctcttgcctatagtttttgcgccaagtataagtccagttgatagtttaaatattatttgtctggcttt |
207 |
Q |
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| T |
29662461 |
tgtaatgtaggatgttaatgtgtttcattaacctcttgcctatagtttttgcgccaagtataagtccagttgatagtttaaatattatttgtctggcttt |
29662362 |
T |
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| Q |
208 |
tttatggatgcaatgttataaagtgcaacctcttcttaactatatgaacaaataattctaattgttaagggtgtagattttcaatttatttta |
300 |
Q |
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| T |
29662361 |
ttgatggatgcaatgttataaagtgcaacctcttcttaactatatgaacaaataattctaattgttaagggtgtagattttcaatttatttta |
29662269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 29472265 - 29472361
Alignment:
| Q |
28 |
tacaatgataacacatttacattgtgttcacttgggatgttgaagaaggtatatatatcattcattttagcttttcttcctgtagtgtaggatgttaat |
126 |
Q |
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||||| |||||||||| |||||||||||||| || |||||||| | ||||||| |||||||| | | |||||||||||||||||||||||||||| |
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| T |
29472265 |
tacaaagataacacatgcacattgtgttcactccggttgttgaagtaagtatataattcattcatataa--ttttcttcctgtagtgtaggatgttaat |
29472361 |
T |
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