View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4795-Insertion-12 (Length: 241)

Name: NF4795-Insertion-12
Description: NF4795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4795-Insertion-12
NF4795-Insertion-12
[»] chr6 (15 HSPs)
chr6 (8-241)||(5421873-5422106)
chr6 (70-241)||(5070618-5070783)
chr6 (184-241)||(5092784-5092841)
chr6 (184-241)||(5160699-5160756)
chr6 (184-241)||(5077284-5077341)
chr6 (176-241)||(5443942-5444007)
chr6 (185-241)||(5149903-5149959)
chr6 (177-241)||(5185057-5185121)
chr6 (190-241)||(5360769-5360820)
chr6 (175-241)||(5358335-5358401)
chr6 (175-241)||(5429436-5429502)
chr6 (165-241)||(5366333-5366409)
chr6 (190-241)||(5394196-5394247)
chr6 (175-241)||(5107981-5108047)
chr6 (176-241)||(5272848-5272913)
[»] chr7 (1 HSPs)
chr7 (177-241)||(34719964-34720028)
[»] chr4 (3 HSPs)
chr4 (187-241)||(4332495-4332549)
chr4 (187-241)||(4356598-4356652)
chr4 (190-241)||(4129756-4129808)
[»] chr5 (1 HSPs)
chr5 (179-221)||(20809424-20809466)


Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 8 - 241
Target Start/End: Original strand, 5421873 - 5422106
Alignment:
Q  8 ttatctgtttcaacaattagttagttcattattctctttcatctcaattcatccattcattcatgtcttcctccagtaaagcaatttctaaatggagaaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5421873 ttatctgtttcaacaattagttagttcattattctctttcatctcaattcatccattcattcatgtcttcctccagtaaagcaatttctaaatggagaaa 5421972  T
Q  108 agcaagtatagtaataagagcagtgtttcgcttcaaatctcttaattttggcaaaagtcgaaacgaaacaaggatctatgatgtgttcttaagttttaga 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  5421973 agcaagtatagtaataagagcagtgtttcgcttcaaatctcttaattttggcaaaagtcgaaacgaaacaaggatccatgatgtgttcttaagttttaga 5422072  T
Q  208 ggagaggatactcgtgcatcattcacttcacatc 241  Q
    ||||||||||||||||||||||||||||||||||    
T  5422073 ggagaggatactcgtgcatcattcacttcacatc 5422106  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 70 - 241
Target Start/End: Complemental strand, 5070783 - 5070618
Alignment:
Q  70 atgtcttcctccagtaaagcaatttctaaatggagaaaagcaagtatagtaataagagcagtgtttcgcttcaaatctcttaattttggcaaaagtcgaa 169  Q
    |||||||||| |||| |||| |  ||||||||||||||||  |||||||||| |||||||||||||  ||||||||||||   || ||| |      |||    
T  5070783 atgtcttcctacagtgaagcgagatctaaatggagaaaagttagtatagtaacaagagcagtgtttaacttcaaatctctcctttatggta------gaa 5070690  T
Q  170 acgaaacaaggatctatgatgtgttcttaagttttagaggagaggatactcgtgcatcattcacttcacatc 241  Q
    | ||| |||||||| ||||||||||||||||||| ||||||||||| |||||  | ||||||||||||||||    
T  5070689 atgaatcaaggatccatgatgtgttcttaagtttcagaggagaggacactcgctcttcattcacttcacatc 5070618  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 5092784 - 5092841
Alignment:
Q  184 tatgatgtgttcttaagttttagaggagaggatactcgtgcatcattcacttcacatc 241  Q
    ||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  5092784 tatgaagtgttcttaagttttagaggaaaagatactcgtgcatcattcacttcacatc 5092841  T

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Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 5160756 - 5160699
Alignment:
Q  184 tatgatgtgttcttaagttttagaggagaggatactcgtgcatcattcacttcacatc 241  Q
    ||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  5160756 tatgaagtgttcttaagttttagaggaaaagatactcgtgcatcattcacttcacatc 5160699  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 5077341 - 5077284
Alignment:
Q  184 tatgatgtgttcttaagttttagaggagaggatactcgtgcatcattcacttcacatc 241  Q
    |||||||||||||||||||| ||||||| ||| ||||||| ||| |||||||||||||    
T  5077341 tatgatgtgttcttaagtttcagaggagtggacactcgtgaatctttcacttcacatc 5077284  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 241
Target Start/End: Original strand, 5443942 - 5444007
Alignment:
Q  176 caaggatctatgatgtgttcttaagttttagaggagaggatactcgtgcatcattcacttcacatc 241  Q
    |||||||| |||| ||||||||||||||||||||  | ||||||||||| || |||||||||||||    
T  5443942 caaggatccatgacgtgttcttaagttttagagggaaagatactcgtgcttccttcacttcacatc 5444007  T

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Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 5149959 - 5149903
Alignment:
Q  185 atgatgtgttcttaagttttagaggagaggatactcgtgcatcattcacttcacatc 241  Q
    |||| |||||||||||||||||||| || ||||| || |||||||||||||||||||    
T  5149959 atgaagtgttcttaagttttagaggggaagatacgcgcgcatcattcacttcacatc 5149903  T

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Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 177 - 241
Target Start/End: Complemental strand, 5185121 - 5185057
Alignment:
Q  177 aaggatctatgatgtgttcttaagttttagaggagaggatactcgtgcatcattcacttcacatc 241  Q
    ||||||| ||||||||||||||||||||||||| || ||||||||| | || || ||||||||||    
T  5185121 aaggatccatgatgtgttcttaagttttagaggggaagatactcgttcttcctttacttcacatc 5185057  T

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Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 5360769 - 5360820
Alignment:
Q  190 gtgttcttaagttttagaggagaggatactcgtgcatcattcacttcacatc 241  Q
    ||||||||||||||||| ||||||||||||||| | || |||||||||||||    
T  5360769 gtgttcttaagttttaggggagaggatactcgttcttccttcacttcacatc 5360820  T

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Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 241
Target Start/End: Complemental strand, 5358401 - 5358335
Alignment:
Q  175 acaaggatctatgatgtgttcttaagttttagaggagaggatactcgtgcatcattcacttcacatc 241  Q
    ||||||||| ||||||||||||| ||||| ||||||||||| |||| ||| |  |||||||||||||    
T  5358401 acaaggatccatgatgtgttcttgagtttcagaggagaggacactcatgcttgcttcacttcacatc 5358335  T

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Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 241
Target Start/End: Original strand, 5429436 - 5429502
Alignment:
Q  175 acaaggatctatgatgtgttcttaagttttagaggagaggatactcgtgcatcattcacttcacatc 241  Q
    ||||||||| |||| |||||| ||||||||||||| || |||||||| | ||| |||||||||||||    
T  5429436 acaaggatccatgacgtgttcctaagttttagaggcgaagatactcgaggatcgttcacttcacatc 5429502  T

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Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 5366333 - 5366409
Alignment:
Q  165 tcgaaacgaaacaaggatctatgatgtgttcttaagttttagaggagaggatactcgtgcatcattcacttcacatc 241  Q
    ||||||||| ||| ||||  ||||||||||| |||||||||| ||| |||| || |||||||| |||||||| ||||    
T  5366333 tcgaaacgacacatggatgcatgatgtgttcctaagttttagtggaaaggagacgcgtgcatctttcacttcgcatc 5366409  T

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Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 5394196 - 5394247
Alignment:
Q  190 gtgttcttaagttttagaggagaggatactcgtgcatcattcacttcacatc 241  Q
    |||||||||||||| ||||| ||||| |||||| | ||||||||||||||||    
T  5394196 gtgttcttaagtttcagaggggaggacactcgttcttcattcacttcacatc 5394247  T

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Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 241
Target Start/End: Complemental strand, 5108047 - 5107981
Alignment:
Q  175 acaaggatctatgatgtgttcttaagttttagaggagaggatactcgtgcatcattcacttcacatc 241  Q
    ||||||||| |||| |||||| ||||||| |||||  | ||||||||||| || |||||||||||||    
T  5108047 acaaggatccatgacgtgttcctaagtttcagaggcaaagatactcgtgcttccttcacttcacatc 5107981  T

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Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 241
Target Start/End: Original strand, 5272848 - 5272913
Alignment:
Q  176 caaggatctatgatgtgttcttaagttttagaggagaggatactcgtgcatcattcacttcacatc 241  Q
    |||||| |||||| |||||||||||||| ||||| ||||| || ||  | ||||||||||||||||    
T  5272848 caaggagctatgaagtgttcttaagtttcagaggcgaggacacgcgcacttcattcacttcacatc 5272913  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 177 - 241
Target Start/End: Complemental strand, 34720028 - 34719964
Alignment:
Q  177 aaggatctatgatgtgttcttaagttttagaggagaggatactcgtgcatcattcacttcacatc 241  Q
    ||||||||||||||||||||| ||||| ||||| || ||||||||||||  ||||| ||||||||    
T  34720028 aaggatctatgatgtgttcttgagtttcagaggggaagatactcgtgcaagattcatttcacatc 34719964  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 187 - 241
Target Start/End: Original strand, 4332495 - 4332549
Alignment:
Q  187 gatgtgttcttaagttttagaggagaggatactcgtgcatcattcacttcacatc 241  Q
    ||||||||||| ||||||||||| || || ||||| |||||||||||||||||||    
T  4332495 gatgtgttcttgagttttagaggcgaagacactcgcgcatcattcacttcacatc 4332549  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 241
Target Start/End: Original strand, 4356598 - 4356652
Alignment:
Q  187 gatgtgttcttaagttttagaggagaggatactcgtgcatcattcacttcacatc 241  Q
    |||||||| || |||||||||||||| || ||| | |||||||||||||||||||    
T  4356598 gatgtgtttttgagttttagaggagaagacactagagcatcattcacttcacatc 4356652  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 4129808 - 4129756
Alignment:
Q  190 gtgttcttaagttttagaggagaggatactc-gtgcatcattcacttcacatc 241  Q
    |||||||||||||| ||||| || ||||||| |||||||||||| ||||||||    
T  4129808 gtgttcttaagtttcagaggtgatgatactcagtgcatcattcatttcacatc 4129756  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 221
Target Start/End: Original strand, 20809424 - 20809466
Alignment:
Q  179 ggatctatgatgtgttcttaagttttagaggagaggatactcg 221  Q
    |||||||||| |||||| ||||||||||||| |||||||||||    
T  20809424 ggatctatgacgtgttcataagttttagaggggaggatactcg 20809466  T

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