View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4795-Insertion-14 (Length: 55)

Name: NF4795-Insertion-14
Description: NF4795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4795-Insertion-14
NF4795-Insertion-14
[»] chr8 (2 HSPs)
chr8 (8-55)||(9439511-9439558)
chr8 (8-55)||(9444231-9444278)
[»] chr6 (7 HSPs)
chr6 (8-55)||(1234832-1234879)
chr6 (8-55)||(26976270-26976317)
chr6 (8-55)||(27874129-27874176)
chr6 (8-55)||(27878848-27878895)
chr6 (8-55)||(30986639-30986686)
chr6 (8-55)||(30966783-30966830)
chr6 (8-55)||(18968007-18968055)
[»] chr5 (5 HSPs)
chr5 (8-55)||(34352379-34352426)
chr5 (8-55)||(34360087-34360134)
chr5 (8-55)||(41718541-41718588)
chr5 (8-55)||(41723267-41723314)
chr5 (8-55)||(29585439-29585486)
[»] chr4 (9 HSPs)
chr4 (8-55)||(24520164-24520211)
chr4 (8-55)||(48697271-48697318)
chr4 (8-55)||(48701960-48702007)
chr4 (8-55)||(42266034-42266081)
chr4 (8-55)||(42270753-42270800)
chr4 (8-55)||(30945615-30945662)
chr4 (8-52)||(30950321-30950365)
chr4 (8-53)||(48782872-48782917)
chr4 (8-55)||(10427410-10427458)
[»] chr3 (5 HSPs)
chr3 (8-55)||(5818652-5818699)
chr3 (8-55)||(5823414-5823461)
chr3 (8-55)||(54546015-54546062)
chr3 (8-55)||(2817401-2817448)
chr3 (8-55)||(35977112-35977159)
[»] chr2 (4 HSPs)
chr2 (8-55)||(5198794-5198841)
chr2 (8-55)||(28715893-28715940)
chr2 (8-55)||(30397049-30397096)
chr2 (8-43)||(15603020-15603055)
[»] chr1 (2 HSPs)
chr1 (8-55)||(30697253-30697300)
chr1 (8-55)||(4130215-4130263)
[»] chr7 (3 HSPs)
chr7 (8-55)||(16183770-16183818)
chr7 (8-55)||(8138598-8138645)
chr7 (8-55)||(8140102-8140149)


Alignment Details
Target: chr8 (Bit Score: 48; Significance: 3e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-19
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 9439511 - 9439558
Alignment:
Q  8 tcactaagtggaagaaattacaggacctctctctaactacaaggagag 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9439511 tcactaagtggaagaaattacaggacctctctctaactacaaggagag 9439558  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-19
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 9444231 - 9444278
Alignment:
Q  8 tcactaagtggaagaaattacaggacctctctctaactacaaggagag 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9444231 tcactaagtggaagaaattacaggacctctctctaactacaaggagag 9444278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-19; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-19
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 1234879 - 1234832
Alignment:
Q  8 tcactaagtggaagaaattacaggacctctctctaactacaaggagag 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1234879 tcactaagtggaagaaattacaggacctctctctaactacaaggagag 1234832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-19
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 26976270 - 26976317
Alignment:
Q  8 tcactaagtggaagaaattacaggacctctctctaactacaaggagag 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26976270 tcactaagtggaagaaattacaggacctctctctaactacaaggagag 26976317  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-17
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 27874129 - 27874176
Alignment:
Q  8 tcactaagtggaagaaattacaggacctctctctaactacaaggagag 55  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||    
T  27874129 tcactaagtggaagaaattacaggacctctctctaaatacaaggagag 27874176  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-17
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 27878848 - 27878895
Alignment:
Q  8 tcactaagtggaagaaattacaggacctctctctaactacaaggagag 55  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||    
T  27878848 tcactaagtggaagaaattacaggacctctctctaaatacaaggagag 27878895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.000000000004
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 30986686 - 30986639
Alignment:
Q  8 tcactaagtggaagaaattacaggacctctctctaactacaaggagag 55  Q
    ||||||||||||||||||| |||||||||||||||| | |||||||||    
T  30986686 tcactaagtggaagaaattgcaggacctctctctaaatgcaaggagag 30986639  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.0000000009
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 30966830 - 30966783
Alignment:
Q  8 tcactaagtggaagaaattacaggacctctctctaactacaaggagag 55  Q
    ||||||||||||||||||| ||| |||||||||||| | |||||||||    
T  30966830 tcactaagtggaagaaattgcagaacctctctctaaatgcaaggagag 30966783  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 18968055 - 18968007
Alignment:
Q  8 tcactaagtggaaga-aattacaggacctctctctaactacaaggagag 55  Q
    ||||||||||||||| ||||||| ||| ||||||||| |||||||||||    
T  18968055 tcactaagtggaagacaattacaagacttctctctaaatacaaggagag 18968007  T

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Target: chr5 (Bit Score: 48; Significance: 3e-19; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-19
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 34352426 - 34352379
Alignment:
Q  8 tcactaagtggaagaaattacaggacctctctctaactacaaggagag 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34352426 tcactaagtggaagaaattacaggacctctctctaactacaaggagag 34352379  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-19
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 34360134 - 34360087
Alignment:
Q  8 tcactaagtggaagaaattacaggacctctctctaactacaaggagag 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34360134 tcactaagtggaagaaattacaggacctctctctaactacaaggagag 34360087  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-19
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 41718588 - 41718541
Alignment:
Q  8 tcactaagtggaagaaattacaggacctctctctaactacaaggagag 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  41718588 tcactaagtggaagaaattacaggacctctctctaactacaaggagag 41718541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-19
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 41723314 - 41723267
Alignment:
Q  8 tcactaagtggaagaaattacaggacctctctctaactacaaggagag 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  41723314 tcactaagtggaagaaattacaggacctctctctaactacaaggagag 41723267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 6e-17
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 29585439 - 29585486
Alignment:
Q  8 tcactaagtggaagaaattacaggacctctctctaactacaaggagag 55  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||    
T  29585439 tcactaagtggaagaaattacaggacctctctctaactacaaagagag 29585486  T

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Target: chr4 (Bit Score: 48; Significance: 3e-19; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-19
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 24520164 - 24520211
Alignment:
Q  8 tcactaagtggaagaaattacaggacctctctctaactacaaggagag 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  24520164 tcactaagtggaagaaattacaggacctctctctaactacaaggagag 24520211  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-19
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 48697271 - 48697318
Alignment:
Q  8 tcactaagtggaagaaattacaggacctctctctaactacaaggagag 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  48697271 tcactaagtggaagaaattacaggacctctctctaactacaaggagag 48697318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-19
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 48701960 - 48702007
Alignment:
Q  8 tcactaagtggaagaaattacaggacctctctctaactacaaggagag 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  48701960 tcactaagtggaagaaattacaggacctctctctaactacaaggagag 48702007  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-17
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 42266081 - 42266034
Alignment:
Q  8 tcactaagtggaagaaattacaggacctctctctaactacaaggagag 55  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||    
T  42266081 tcactaagtggaagaaattacaggacctctctctaaatacaaggagag 42266034  T

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Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-17
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 42270800 - 42270753
Alignment:
Q  8 tcactaagtggaagaaattacaggacctctctctaactacaaggagag 55  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||    
T  42270800 tcactaagtggaagaaattacaggacctctctctaaatacaaggagag 42270753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 30945615 - 30945662
Alignment:
Q  8 tcactaagtggaagaaattacaggacctctctctaactacaaggagag 55  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||    
T  30945615 tcactaagtggaagaaattacagaacctctctctaaatacaaggagag 30945662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.0000000000009
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 30950321 - 30950365
Alignment:
Q  8 tcactaagtggaagaaattacaggacctctctctaactacaagga 52  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||    
T  30950321 tcactaagtggaagaaattacagaacctctctctaaatacaagga 30950365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 48782917 - 48782872
Alignment:
Q  8 tcactaagtggaagaaattacaggacctctctctaactacaaggag 53  Q
    |||||||||||||||||||| | ||||||||||||| |||| ||||    
T  48782917 tcactaagtggaagaaattagatgacctctctctaaatacatggag 48782872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 10427458 - 10427410
Alignment:
Q  8 tcactaagtggaaga-aattacaggacctctctctaactacaaggagag 55  Q
    ||||||||||||||| ||||||| ||| ||||||||| |||||||||||    
T  10427458 tcactaagtggaagacaattacaagacttctctctaaatacaaggagag 10427410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-19; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-19
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 5818652 - 5818699
Alignment:
Q  8 tcactaagtggaagaaattacaggacctctctctaactacaaggagag 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5818652 tcactaagtggaagaaattacaggacctctctctaactacaaggagag 5818699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-19
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 5823414 - 5823461
Alignment:
Q  8 tcactaagtggaagaaattacaggacctctctctaactacaaggagag 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5823414 tcactaagtggaagaaattacaggacctctctctaactacaaggagag 5823461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-17
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 54546062 - 54546015
Alignment:
Q  8 tcactaagtggaagaaattacaggacctctctctaactacaaggagag 55  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||    
T  54546062 tcactaagtggatgaaattacaggacctctctctaactacaaggagag 54546015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.000000000004
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 2817401 - 2817448
Alignment:
Q  8 tcactaagtggaagaaattacaggacctctctctaactacaaggagag 55  Q
    |||||||||||||||||||||| || |||||||||| |||||||||||    
T  2817401 tcactaagtggaagaaattacaagaactctctctaaatacaaggagag 2817448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.0000000009
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 35977159 - 35977112
Alignment:
Q  8 tcactaagtggaagaaattacaggacctctctctaactacaaggagag 55  Q
    ||||||||||||| |||||||| ||| ||||||||| |||||||||||    
T  35977159 tcactaagtggaaaaaattacaagacttctctctaaatacaaggagag 35977112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-19
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 5198794 - 5198841
Alignment:
Q  8 tcactaagtggaagaaattacaggacctctctctaactacaaggagag 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5198794 tcactaagtggaagaaattacaggacctctctctaactacaaggagag 5198841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.0000000009
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 28715940 - 28715893
Alignment:
Q  8 tcactaagtggaagaaattacaggacctctctctaactacaaggagag 55  Q
    |||| ||||||||||||||||||||| ||||||||| | |||||||||    
T  28715940 tcacaaagtggaagaaattacaggacatctctctaaatgcaaggagag 28715893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.0000000009
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 30397049 - 30397096
Alignment:
Q  8 tcactaagtggaagaaattacaggacctctctctaactacaaggagag 55  Q
    |||||||||||||||||||||| ||||||| ||||  |||||||||||    
T  30397049 tcactaagtggaagaaattacaagacctctttctatatacaaggagag 30397096  T

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Target: chr2; HSP #4
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 15603055 - 15603020
Alignment:
Q  8 tcactaagtggaagaaattacaggacctctctctaa 43  Q
    ||||||||| |||||||||||| |||||||||||||    
T  15603055 tcactaagtagaagaaattacaagacctctctctaa 15603020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.000000000004
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 30697253 - 30697300
Alignment:
Q  8 tcactaagtggaagaaattacaggacctctctctaactacaaggagag 55  Q
    |||||||||||||||||||||| ||||||| ||||| |||||||||||    
T  30697253 tcactaagtggaagaaattacaagacctctttctaaatacaaggagag 30697300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 4130263 - 4130215
Alignment:
Q  8 tcactaagtggaaga-aattacaggacctctctctaactacaaggagag 55  Q
    ||||||||||||||| ||||||| ||| ||||||||| |||||||||||    
T  4130263 tcactaagtggaagataattacaagacttctctctaaatacaaggagag 4130215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.0000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 16183770 - 16183818
Alignment:
Q  8 tcactaagtggaaga-aattacaggacctctctctaactacaaggagag 55  Q
    ||||||||||||||| ||||||| ||||||||||||| |||||||||||    
T  16183770 tcactaagtggaagacaattacaagacctctctctaaatacaaggagag 16183818  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.0000000009
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 8138598 - 8138645
Alignment:
Q  8 tcactaagtggaagaaattacaggacctctctctaactacaaggagag 55  Q
    ||||||| |||||||||||||| |||||| |||||| |||||||||||    
T  8138598 tcactaaatggaagaaattacaagacctccctctaaatacaaggagag 8138645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 8140102 - 8140149
Alignment:
Q  8 tcactaagtggaagaaattacaggacctctctctaactacaaggagag 55  Q
    ||||| |||||||||||||| | ||||||||||| | |||||||||||    
T  8140102 tcactcagtggaagaaattataagacctctctcttaatacaaggagag 8140149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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