View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4795-Insertion-17 (Length: 284)

Name: NF4795-Insertion-17
Description: NF4795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4795-Insertion-17
NF4795-Insertion-17
[»] chr4 (15 HSPs)
chr4 (7-281)||(4907220-4907493)
chr4 (7-281)||(29756299-29756572)
chr4 (7-281)||(4933089-4933363)
chr4 (48-281)||(35785230-35785471)
chr4 (48-281)||(7108203-7108446)
chr4 (13-226)||(29757413-29757634)
chr4 (7-226)||(4906156-4906382)
chr4 (7-226)||(4932025-4932251)
chr4 (49-250)||(55019151-55019348)
chr4 (7-281)||(23703631-23703895)
chr4 (48-226)||(22674219-22674405)
chr4 (47-226)||(35786483-35786670)
chr4 (75-250)||(38158412-38158595)
chr4 (48-226)||(23702469-23702653)
chr4 (75-129)||(39665368-39665422)
[»] chr1 (13 HSPs)
chr1 (7-281)||(26734453-26734728)
chr1 (75-281)||(42300547-42300761)
chr1 (49-284)||(52793772-52794015)
chr1 (52-226)||(42301423-42301605)
chr1 (48-245)||(8322587-8322793)
chr1 (49-218)||(9626538-9626715)
chr1 (7-245)||(8323225-8323471)
chr1 (159-250)||(28253416-28253507)
chr1 (7-151)||(31810016-31810160)
chr1 (7-245)||(31815557-31815802)
chr1 (77-243)||(27524363-27524539)
chr1 (49-130)||(9627491-9627572)
chr1 (77-138)||(28253538-28253599)
[»] chr8 (9 HSPs)
chr8 (7-279)||(359073-359346)
chr8 (53-281)||(21143778-21144015)
chr8 (7-226)||(358004-358231)
chr8 (49-226)||(21142548-21142729)
chr8 (165-241)||(37964438-37964514)
chr8 (165-241)||(27409956-27410032)
chr8 (161-245)||(27411026-27411110)
chr8 (161-245)||(37963463-37963547)
chr8 (75-121)||(37963368-37963414)
[»] chr6 (13 HSPs)
chr6 (7-281)||(843278-843553)
chr6 (48-226)||(842253-842439)
chr6 (50-245)||(19401908-19402111)
chr6 (75-281)||(12599991-12600204)
chr6 (48-245)||(7800025-7800230)
chr6 (49-245)||(19597764-19597968)
chr6 (7-245)||(11065439-11065686)
chr6 (48-179)||(20773294-20773433)
chr6 (14-151)||(30321053-30321189)
chr6 (47-151)||(7796818-7796921)
chr6 (49-138)||(19596411-19596500)
chr6 (217-281)||(20772539-20772603)
chr6 (49-135)||(19579960-19580046)
[»] chr3 (11 HSPs)
chr3 (7-281)||(24612305-24612578)
chr3 (47-226)||(33781299-33781486)
chr3 (48-226)||(24613418-24613604)
chr3 (76-252)||(31199343-31199527)
chr3 (47-114)||(33780729-33780796)
chr3 (49-138)||(31200848-31200936)
chr3 (165-241)||(27320486-27320562)
chr3 (164-245)||(27329015-27329096)
chr3 (75-119)||(27320618-27320662)
chr3 (75-119)||(27362376-27362420)
chr3 (201-245)||(34594458-34594502)
[»] scaffold0060 (2 HSPs)
scaffold0060 (47-281)||(12999-13241)
scaffold0060 (48-226)||(11846-12032)
[»] chr5 (4 HSPs)
chr5 (54-281)||(13373840-13374075)
chr5 (50-281)||(9671029-9671268)
chr5 (51-218)||(9672162-9672337)
chr5 (51-224)||(13375144-13375308)
[»] chr2 (17 HSPs)
chr2 (75-281)||(44819863-44820077)
chr2 (49-281)||(10344899-10345138)
chr2 (48-226)||(42929000-42929186)
chr2 (49-245)||(40128714-40128918)
chr2 (49-245)||(43516466-43516670)
chr2 (150-281)||(42930184-42930313)
chr2 (48-226)||(44820734-44820920)
chr2 (52-226)||(10344057-10344241)
chr2 (52-147)||(42931668-42931763)
chr2 (100-245)||(42827436-42827589)
chr2 (7-148)||(22054361-22054501)
chr2 (7-151)||(22060049-22060192)
chr2 (195-245)||(22059950-22060000)
chr2 (49-135)||(43517982-43518068)
chr2 (49-138)||(40127308-40127397)
chr2 (201-250)||(40127443-40127492)
chr2 (201-250)||(43517879-43517928)
[»] chr7 (6 HSPs)
chr7 (49-245)||(41591583-41591787)
chr7 (75-245)||(41385594-41385772)
chr7 (49-138)||(41593105-41593194)
chr7 (201-250)||(41593005-41593054)
chr7 (201-250)||(41384357-41384406)
chr7 (176-252)||(39787948-39788024)
[»] scaffold0129 (1 HSPs)
scaffold0129 (7-245)||(4044-4289)


Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 7 - 281
Target Start/End: Complemental strand, 4907493 - 4907220
Alignment:
Q  7 agtttgcgcatttttggttttcgtccctgcaagnnnnnnnctttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagctt 106  Q
    |||| ||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4907493 agttcgcgcatttttggttttcgtccctgcaagttttttt-tttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagctt 4907395  T
Q  107 ctgtcaacaaaaacgccatggtggctaacggaacacacgtggcagttggcacatttgatgagatggcatgagagatgataagttgttaaaatacagggac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4907394 ctgtcaacaaaaacgccatggtggctaacggaacacacgtggcagttggcacatttgatgagatggcatgagagatgataagttgttaaaatacagggac 4907295  T
Q  207 taaaatcaaaaacgtaaattgacagagggatgaaattaagaaaacggctaatcttcttcttcctctcaaatttca 281  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  4907294 taaaatcaaaaacgtaaattgacacagggatgaaattaaaaaaacggttaatcttcttcttcctctcaaatttca 4907220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 7 - 281
Target Start/End: Original strand, 29756299 - 29756572
Alignment:
Q  7 agtttgcgcatttttggttttcgtccctgcaagnnnnnnnctttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagctt 106  Q
    |||| ||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29756299 agttcgcgcatttttggttttcgtccctgcaagttttttt-tttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagctt 29756397  T
Q  107 ctgtcaacaaaaacgccatggtggctaacggaacacacgtggcagttggcacatttgatgagatggcatgagagatgataagttgttaaaatacagggac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29756398 ctgtcaacaaaaacgccatggtggctaacggaacacacgtggcagttggcacatttgatgagatggcatgagagatgataagttgttaaaatacagggac 29756497  T
Q  207 taaaatcaaaaacgtaaattgacagagggatgaaattaagaaaacggctaatcttcttcttcctctcaaatttca 281  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  29756498 taaaatcaaaaacgtaaattgacacagggatgaaattaaaaaaacggttaatcttcttcttcctctcaaatttca 29756572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 7 - 281
Target Start/End: Complemental strand, 4933363 - 4933089
Alignment:
Q  7 agtttgcgcatttttggttttcgtccctgcaagnnnnnnnctttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagctt 106  Q
    |||| ||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4933363 agttcgcgcatttttggttttcgtccctgcaagttttttttcttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagctt 4933264  T
Q  107 ctgtcaacaaaaacgccatggtggctaacggaacacacgtggcagttggcacatttgatgagatggcatgagagatgataagttgttaaaatacagggac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4933263 ctgtcaacaaaaacgccatggtggctaacggaacacacgtggcagttggcacatttgatgagatggcatgagagatgataagttgttaaaatacagggac 4933164  T
Q  207 taaaatcaaaaacgtaaattgacagagggatgaaattaagaaaacggctaatcttcttcttcctctcaaatttca 281  Q
    ||||||||||| |||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  4933163 taaaatcaaaatcgtaaattgacacagggatgaaattaaaaaaacggttaatcttcttcttcctctcaaatttca 4933089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 48 - 281
Target Start/End: Original strand, 35785230 - 35785471
Alignment:
Q  48 tttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaacggaacacacgtg 147  Q
    ||||||||||||||| |||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||  |||||||||||||||| ||||||||    
T  35785230 tttctaaaatgaaccatgtatcttcttaaccttttgaaaatagtctttgccgtcaacttctgtcaacaaaaacatcatggtggctaacggagcacacgtg 35785329  T
Q  148 gcagtt--------ggcacatttgatgagatggcatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaattgacagagggatga 239  Q
    | ||||        ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  35785330 gtagttcatgagttggcacatttgatgagatggcatgagagatgataagtttttaaaatacagggactaaaatcaaaaacgtaaattgacacagggatga 35785429  T
Q  240 aattaagaaaacggctaatcttcttcttcctctcaaatttca 281  Q
    |||||| ||||||   ||||||||||||||||||||||||||    
T  35785430 aattaaaaaaacgttcaatcttcttcttcctctcaaatttca 35785471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 48 - 281
Target Start/End: Complemental strand, 7108446 - 7108203
Alignment:
Q  48 tttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaacggaacacacgtg 147  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||    
T  7108446 tttctaaaatgaaccttgtatcttcttaaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaatgtcatggtggctaacggagcacacgtg 7108347  T
Q  148 gcagtt--------ggcacatttgatgagatggcatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaattgacagagggatga 239  Q
    ||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  |||||| ||||||||    
T  7108346 gcagttcatgagttggcacatttgatgagatggcatgagagatgataagttgttaaaatacagggactaaaataaaaaacgtacgttgacacagggatga 7108247  T
Q  240 aattaagaaaa--cggctaatcttcttcttcctctcaaatttca 281  Q
    |||||| ||||  ||   ||||||||||||||||||||||||||    
T  7108246 aattaaaaaaaaacgttcaatcttcttcttcctctcaaatttca 7108203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 13 - 226
Target Start/End: Complemental strand, 29757634 - 29757413
Alignment:
Q  13 cgcatttttggttttcgtccctgcaagnnnnnnnctttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagcttctgtca 112  Q
    ||||||||||||||||||||||| |||        |||||||||| ||||||||||||||| |||||||||||||| ||||||||||| |||||||||||    
T  29757634 cgcatttttggttttcgtccctgtaagtttttttttttctaaaataaaccctgtatcttcttaaccttttgaaaatggtccttgccgttagcttctgtca 29757535  T
Q  113 acaaaaacgccatggtggctaacggaacacacgtggc--------agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacaggg 204  Q
    ||||||||||||  |||||||||||| |||| |||||        |||||||||||||||||||||||||||||||||||| ||||||  ||| ||||||    
T  29757534 acaaaaacgccactgtggctaacggagcacaggtggcaagttatgagttggcacatttgatgagatggcatgagagatgattagttgtgtaaagacaggg 29757435  T
Q  205 actaaaatcaaaaacgtaaatt 226  Q
    ||||||||||||||||||||||    
T  29757434 actaaaatcaaaaacgtaaatt 29757413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 7 - 226
Target Start/End: Original strand, 4906156 - 4906382
Alignment:
Q  7 agtttgcgcatttttggttttcgtccctgcaagnnnnnnnctttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagctt 106  Q
    |||| |||||||||||||||||||||||| |||        |||||||||| ||||||||||||||| |||||||||||||| ||||||||||| |||||    
T  4906156 agttcgcgcatttttggttttcgtccctgtaagttttttt-tttctaaaataaaccctgtatcttcttaaccttttgaaaatggtccttgccgttagctt 4906254  T
Q  107 ctgtcaacaaaaacgccatggtggctaacggaacacacgtggc--------agttggcacatttgatgagatggcatgagagatgataagttgttaaaat 198  Q
    ||||||||||||||||||  |||||||||||| |||| |||||        |||||||||||||||||||||||||||||||||||| ||||||  |||     
T  4906255 ctgtcaacaaaaacgccactgtggctaacggagcacaggtggcaagttatgagttggcacatttgatgagatggcatgagagatgattagttgtgtaaag 4906354  T
Q  199 acagggactaaaatcaaaaacgtaaatt 226  Q
    ||||||||||||||||||||||||||||    
T  4906355 acagggactaaaatcaaaaacgtaaatt 4906382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 7 - 226
Target Start/End: Original strand, 4932025 - 4932251
Alignment:
Q  7 agtttgcgcatttttggttttcgtccctgcaagnnnnnnnctttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagctt 106  Q
    |||| |||||||||||||||||||||||| |||        ||| |||||| ||||||||||||||| |||||||||||||| ||||||||||| |||||    
T  4932025 agttcgcgcatttttggttttcgtccctgtaagttttttttttt-taaaataaaccctgtatcttcttaaccttttgaaaatggtccttgccgttagctt 4932123  T
Q  107 ctgtcaacaaaaacgccatggtggctaacggaacacacgtggc--------agttggcacatttgatgagatggcatgagagatgataagttgttaaaat 198  Q
    ||||||||||||||||||  |||||||||||| |||| |||||        |||||||||||||||||||||||||||||||||||| ||||||  |||     
T  4932124 ctgtcaacaaaaacgccactgtggctaacggagcacaggtggcaagttatgagttggcacatttgatgagatggcatgagagatgattagttgtgtaaag 4932223  T
Q  199 acagggactaaaatcaaaaacgtaaatt 226  Q
    ||||||||||||||||||||||||||||    
T  4932224 acagggactaaaatcaaaaacgtaaatt 4932251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 49 - 250
Target Start/End: Complemental strand, 55019348 - 55019151
Alignment:
Q  49 ttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaacggaacacacgtgg 148  Q
    ||||||||  |||||||||| ||   ||||||||  |||  ||||||||||||| |||| |||||||||||| ||||||||||| ||||| ||||||||     
T  55019348 ttctaaaacaaaccctgtattttgataaccttttagaaaaggtccttgccgtcaacttccgtcaacaaaaacaccatggtggcttacggagcacacgtg- 55019250  T
Q  149 cagttggcacatttgatgagatggcatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaattgacagagggatgaaattaagaa 248  Q
       |||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||    
T  55019249 ---ttggcaaagttgatgagatggaatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaattgacacagggatgaaattaaaaa 55019153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 7 - 281
Target Start/End: Complemental strand, 23703895 - 23703631
Alignment:
Q  7 agtttgcgcatttttggttttcgtccctgcaagnnnnnnnctttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagctt 106  Q
    |||| ||||||||||||||||| |||||| |||         |||||||||||||| | |||||||| ||||||||||||||| |||||| |||||||||    
T  23703895 agttcgcgcatttttggttttcatccctgtaagttttttttcttctaaaatgaaccttctatcttcttaaccttttgaaaatattccttgtcgtcagctt 23703796  T
Q  107 ctgtcaacaaaaacgccatggtggctaacggaacacacgtggc--------agttggcacatttgatgagatggcatgagagatgataagttgttaaaat 198  Q
    ||||||||||||||||||| |||| ||||||| ||||||||||        |||||||||||||||||||||||||||||||||||||                
T  23703795 ctgtcaacaaaaacgccatagtggttaacggagcacacgtggcagttcatgagttggcacatttgatgagatggcatgagagatgata------------ 23703708  T
Q  199 acagggactaaaatcaaaaacgtaaattgacagagggatgaaattaagaaaacggctaatcttcttcttcctctcaaatttca 281  Q
          |||||||||||||||||||||||||| |||||||||||||| ||||||   ||||||||||||||||||||||||||    
T  23703707 ------actaaaatcaaaaacgtaaattgacacagggatgaaattaaaaaaacgttcaatcttcttcttcctctcaaatttca 23703631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 48 - 226
Target Start/End: Original strand, 22674219 - 22674405
Alignment:
Q  48 tttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaacggaacacacgtg 147  Q
    |||||||||| ||||||||||||||| |||||||||||||| |||||||| || |||||||||||||||||||||||  |||||||||||| |||| |||    
T  22674219 tttctaaaataaaccctgtatcttcttaaccttttgaaaatggtccttgctgttagcttctgtcaacaaaaacgccactgtggctaacggagcacaggtg 22674318  T
Q  148 gc--------agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaatt 226  Q
    ||        |||||||||||||||||| ||||||||||||||||| ||||||  ||| |||||||||||||| |||| ||||||||    
T  22674319 gcaagtcatgagttggcacatttgatgaaatggcatgagagatgattagttgtgtaaagacagggactaaaataaaaagcgtaaatt 22674405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 47 - 226
Target Start/End: Complemental strand, 35786670 - 35786483
Alignment:
Q  47 ctttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaacggaacacacgt 146  Q
    ||||||||||| |||||||||| |||| |||||||||||||| |||||||||||  ||||||||||||||||||||||  ||| |||||||| |||| ||    
T  35786670 ctttctaaaataaaccctgtatattcttaaccttttgaaaatggtccttgccgttggcttctgtcaacaaaaacgccactgtgcctaacggagcacaggt 35786571  T
Q  147 ggc--------agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaatt 226  Q
    |||        |||||||||||||||||||||||||||||||||||| | || |  ||| |||| ||||||||| |||||||||||||    
T  35786570 ggcaagtcatgagttggcacatttgatgagatggcatgagagatgattaattatgtaaagacagagactaaaataaaaaacgtaaatt 35786483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 75 - 250
Target Start/End: Complemental strand, 38158595 - 38158412
Alignment:
Q  75 aaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaacggaacacacgtggcagtt--------ggcacatttgatg 166  Q
    ||||||||| |||  ||||||||||||| |||  |||||||||||| | |||||||||||  || |||||||| |||||        |||| | ||||||    
T  38158595 aaccttttggaaaaggtccttgccgtcaactttcgtcaacaaaaacactatggtggctaatagagcacacgtgacagttcatgagttggcaaagttgatg 38158496  T
Q  167 agatggcatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaattgacagagggatgaaattaagaaaa 250  Q
     ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||    
T  38158495 cgatggaatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaattgacacaaggatgaaattaaaaaaa 38158412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 48 - 226
Target Start/End: Original strand, 23702469 - 23702653
Alignment:
Q  48 tttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaa-cgccatggtggctaacggaacacacgt 146  Q
    |||||||||| ||||||||||||||| |||||||||||||| ||||||||| | ||||  ||| || ||||| |||||  |||||||||||| |||| ||    
T  23702469 tttctaaaataaaccctgtatcttcttaaccttttgaaaatggtccttgccattagctg-tgtaaaaaaaaaacgccactgtggctaacggagcacaggt 23702567  T
Q  147 ggca--------gttggcacatttgatgagatggcatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaatt 226  Q
    ||||        |||| ||||||||||||||||||||||||  |||| ||||||  ||| ||||||||||||||||||||||||||||    
T  23702568 ggcaagtcacgagttgacacatttgatgagatggcatgaga--tgattagttgtgtaaagacagggactaaaatcaaaaacgtaaatt 23702653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 129
Target Start/End: Original strand, 39665368 - 39665422
Alignment:
Q  75 aaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtg 129  Q
    ||||||||| ||| |||||||  ||||||||| |||||||||||| |||||||||    
T  39665368 aaccttttggaaaaagtccttatcgtcagcttttgtcaacaaaaatgccatggtg 39665422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 7 - 281
Target Start/End: Original strand, 26734453 - 26734728
Alignment:
Q  7 agtttgcgcatttttggttttcgtccctgcaagnnnnnnnct-ttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagct 105  Q
    |||| ||||||||||||||||||||||||||||        | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26734453 agttcgcgcatttttggttttcgtccctgcaagtttttttttcttttaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagct 26734552  T
Q  106 tctgtcaacaaaaacgccatggtggctaacggaacacacgtggcagttggcacatttgatgagatggcatgagagatgataagttgttaaaatacaggga 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26734553 tctgtcaacaaaaacgccatggtggctaacggaacacacgtggcagttggcacatttgatgagatggcatgagagatgataagttgttaaaatacaggga 26734652  T
Q  206 ctaaaatcaaaaacgtaaattgacagagggatgaaattaagaaaacggctaatcttcttcttcctctcaaatttca 281  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  26734653 ctaaaatcaaaaacgtaaattgacacagggatgaaattaaaaaaacggttaatcttcttcttcctctcaaatttca 26734728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 75 - 281
Target Start/End: Original strand, 42300547 - 42300761
Alignment:
Q  75 aaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaacggaacacacgtggcagtt--------ggcacatttgatg 166  Q
    ||||||||| |||  |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||        |||| | ||||||    
T  42300547 aaccttttggaaaaggtccttgccgtcagcttccgtcaacaaaaacgccatggtggctaacggagcacacgtggcagttcatgagttggcaaagttgatg 42300646  T
Q  167 agatggcatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaattgacagagggatgaaattaagaaaacggctaatcttcttct 266  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||  |||||||||| |    
T  42300647 agatggaatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaattgacacagggatgaaattaaaaaaacgtttaatcttctttt 42300746  T
Q  267 tcctctcaaatttca 281  Q
    |||||||||||||||    
T  42300747 tcctctcaaatttca 42300761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 49 - 284
Target Start/End: Original strand, 52793772 - 52794015
Alignment:
Q  49 ttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaacggaacacacgtgg 148  Q
    ||||||||  |||||||||| ||   ||| ||||| |||  ||||||||| |||||||| ||||||||||||| |||||||| ||||| | |||||||||    
T  52793772 ttctaaaacaaaccctgtattttgctaacattttggaaaaggtccttgccttcagcttccgtcaacaaaaacgtcatggtggttaacgaagcacacgtgg 52793871  T
Q  149 cagtt--------ggcacatttgatgagatggcatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaattgacagagggatgaa 240  Q
    |||||        |||| | |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||    
T  52793872 cagttcctgagttggcaaagttgatgagatggaatgagagatgataagttgttaaattacagggactaaaatcaaaaacgtaaattgacacaaggatgaa 52793971  T
Q  241 attaagaaaacggctaatcttcttcttcctctcaaatttcaatc 284  Q
    ||||| ||||||   |||||||||||||||||||||||||||||    
T  52793972 attaaaaaaacgttcaatcttcttcttcctctcaaatttcaatc 52794015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 52 - 226
Target Start/End: Complemental strand, 42301605 - 42301423
Alignment:
Q  52 taaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaacggaacacacgtggcag 151  Q
    |||||| |||| |||||||| |  ||||||||||||| |||||| || |||||||||||||||||||||||||| |||||||||||| |||| |||||||    
T  42301605 taaaataaaccttgtatctttttgaccttttgaaaatggtccttaccatcagcttctgtcaacaaaaacgccattgtggctaacggagcacaggtggcag 42301506  T
Q  152 --------ttggcacatttgatgagatggcatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaatt 226  Q
            |||||||||||||||||||||||||||||||||| ||||||  |||  |||||||||||||||||| ||||||||    
T  42301505 gtcatgacttggcacatttgatgagatggcatgagagatgattagttgtgtaaagtcagggactaaaatcaaaagcgtaaatt 42301423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 48 - 245
Target Start/End: Original strand, 8322587 - 8322793
Alignment:
Q  48 tttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaacggaacacacgtg 147  Q
    |||||||||  |||| |||||||||  ||| |||||||||  ||||||||||||||||||||| |||||||||||||| ||||||||||||  ||| |||    
T  8322587 tttctaaaacaaaccttgtatcttcataacattttgaaaaaggtccttgccgtcagcttctgttaacaaaaacgccattgtggctaacggaggacaggtg 8322686  T
Q  148 gc--------agttggcaca-tttgatgagatggcatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaattgacagagggatg 238  Q
    ||        |||||||| | ||||||||  ||||||| |||||||| ||||    |||||||||||||||||||||||||| |||||  || |||||||    
T  8322687 gcgggcaatgagttggcatattttgatgatctggcatgcgagatgattagtttggtaaatacagggactaaaatcaaaaacgaaaattaccacagggatg 8322786  T
Q  239 aaattaa 245  Q
    |||||||    
T  8322787 aaattaa 8322793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 49 - 218
Target Start/End: Original strand, 9626538 - 9626715
Alignment:
Q  49 ttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaacggaacacacgtgg 148  Q
    ||||||||| |||||| | |||| | |||||||||||||  ||| ||||||||||||||||||||||||||||| || |||||||| ||| |||| ||||    
T  9626538 ttctaaaataaaccctctttcttattaaccttttgaaaacggtcattgccgtcagcttctgtcaacaaaaacgctattgtggctaatggagcacaggtgg 9626637  T
Q  149 --------cagttggcacatttgatgagatggcatgagagatgataagttgttaaaatacagggactaaaatcaaaaa 218  Q
             ||||||| |||||||||||||||||||||||||||| ||||||  ||| | ||||| |||||| |||||    
T  9626638 taggtcgtgagttggctcatttgatgagatggcatgagagatgattagttgtgtaaagatagggattaaaataaaaaa 9626715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 7 - 245
Target Start/End: Complemental strand, 8323471 - 8323225
Alignment:
Q  7 agtttgcgcatttttggttttcgtccctgcaagnnnnnnnctttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagctt 106  Q
    |||| |||||||||||||||||||||||| |||        |||||||||   ||| ||||||||   ||| |||||||||  |||||| ||||||||||    
T  8323471 agttcgcgcatttttggttttcgtccctgtaagatttttt-tttctaaaacagaccttgtatctttataacattttgaaaaaggtccttaccgtcagctt 8323373  T
Q  107 ctgtcaacaaaaacgccatggtggctaacggaacacacgtggc--------agttggcaca-tttgatgagatggcatgagagatgataagttgttaaaa 197  Q
    |||| |||||||||||||| ||||||||||||  ||| |||||        |||||||| | ||||||||  ||||||  |||||||| ||||    |||    
T  8323372 ctgttaacaaaaacgccattgtggctaacggaggacaagtggcaggcaatgagttggcatattttgatgatctggcatttgagatgattagtttggtaaa 8323273  T
Q  198 tacagggactaaaatcaaaaacgtaaattgacagagggatgaaattaa 245  Q
    ||||||||||||||||||||||| |||||  || ||||||||||||||    
T  8323272 tacagggactaaaatcaaaaacgaaaattaccacagggatgaaattaa 8323225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 159 - 250
Target Start/End: Complemental strand, 28253507 - 28253416
Alignment:
Q  159 atttgatgagatggcatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaattgacagagggatgaaattaagaaaa 250  Q
    ||||| ||||||||||||||||||||||||| ||   | || |||||||||||||||||||||||||| ||| |||||||||||||| ||||    
T  28253507 atttgctgagatggcatgagagatgataagtagtgttagtagagggactaaaatcaaaaacgtaaatttacatagggatgaaattaaaaaaa 28253416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 7 - 151
Target Start/End: Original strand, 31810016 - 31810160
Alignment:
Q  7 agtttgcgcatttttggttttcgtccctgcaagnnnnnnnctttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagctt 106  Q
    |||| |||||||||| ||||||||||||| |||        ||||| |||  |||| |||||||||  ||| |||||||||  |||||||||||||||||    
T  31810016 agttcgcgcattttttgttttcgtccctgtaagattttttttttctgaaacaaaccttgtatcttcataacattttgaaaaaggtccttgccgtcagctt 31810115  T
Q  107 ctgtcaacaaaaacgccatggtggctaacggaacacacgtggcag 151  Q
    |||| |||||||||||||| ||||||||||||  ||| |||||||    
T  31810116 ctgttaacaaaaacgccattgtggctaacggaggacaggtggcag 31810160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 245
Target Start/End: Complemental strand, 31815802 - 31815557
Alignment:
Q  7 agtttgcgcatttttggttttcgtccctgcaagnnnnnnnctttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagctt 106  Q
    |||| |||||||||||||||||||||||| |||        ||||| |||  |||| |||||||||  ||| |||||||||  |||||||||||||||||    
T  31815802 agttcgcgcatttttggttttcgtccctgtaagatttttt-tttctgaaacaaaccttgtatcttcataacattttgaaaaaggtccttgccgtcagctt 31815704  T
Q  107 ctgtcaacaaaaacgccatggtggctaacggaacacacgtggc--------agttggcaca-tttgatgagatggcatgagagatgataagttgttaaaa 197  Q
    |||| |||||||||||||  ||||||||||||  ||| |||||        |||||||| | ||||||||  ||||| | |||||||| ||||    |||    
T  31815703 ctgttaacaaaaacgccactgtggctaacggaggacaggtggcaggcaatgagttggcatattttgatgatctggca-gcgagatgattagtttggtaaa 31815605  T
Q  198 tacagggactaaaatcaaaaacgtaaattgacagagggatgaaattaa 245  Q
    |||||||||||||||||||||||  ||||  || ||||||||||||||    
T  31815604 tacagggactaaaatcaaaaacgacaattaccacagggatgaaattaa 31815557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 77 - 243
Target Start/End: Original strand, 27524363 - 27524539
Alignment:
Q  77 ccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaacggaa-cacacgtggcag--------ttggcacat-ttgatg 166  Q
    ||||||| |||| |||| ||||||||| || |||||||||||||||  |||||| |||||||  ||| ||||||||        |||||| |  ||||||    
T  27524363 ccttttggaaatcgtccctgccgtcaggttttgtcaacaaaaacgctttggtgggtaacggaggcactcgtggcaggttctgagttggcaaaagttgatg 27524462  T
Q  167 agatggcatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaattgacagagggatgaaatt 243  Q
    ||||||||||||||||||||||| ||   | |||||||||||||| |||||||  ||||| ||| ||||||||||||    
T  27524463 agatggcatgagagatgataagtagtgttagtacagggactaaaaccaaaaacacaaatttacatagggatgaaatt 27524539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 49 - 130
Target Start/End: Complemental strand, 9627572 - 9627491
Alignment:
Q  49 ttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtgg 130  Q
    ||||||||| |||||||||| ||   |||||||||||||  |||||||||||||||||  ||||||||||||| ||||||||    
T  9627572 ttctaaaataaaccctgtattttgctaaccttttgaaaaaggtccttgccgtcagctttcgtcaacaaaaacgtcatggtgg 9627491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 138
Target Start/End: Complemental strand, 28253599 - 28253538
Alignment:
Q  77 ccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaacgga 138  Q
    |||||||||||| ||||  |||||||| ||| ||||||||||||||  |||||| |||||||    
T  28253599 ccttttgaaaatcgtcccagccgtcagattccgtcaacaaaaacgctttggtggataacgga 28253538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 7 - 279
Target Start/End: Complemental strand, 359346 - 359073
Alignment:
Q  7 agtttgcgcatttttggttttcgtccctgcaagnnnnnnnctttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagctt 106  Q
    |||| |||||||||| ||||||||||||||||        |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  359346 agttcgcgcattttttgttttcgtccctgcaattttttttctttctaaaatgaaccatgtatcttctcaaccttttgaaaatagtccttgccgtcagctt 359247  T
Q  107 ctgtcaacaaaaacgccatggtggctaacggaacacacgtggcagttggcacatttgatgagatggcatgagagatgataagttgttaaaatacagggac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  359246 ctgtcaacaaaaacgccatggtggctaacggaacacacgtggcagttggcacatttgatgagatggcatgagagatgataagttgttaaaatacagggac 359147  T
Q  207 taaaatcaaaaacgtaaattgacagagggatgaaatt-aagaaaacggctaatcttcttcttcctctcaaattt 279  Q
    |||||||||||||||||||||||| |||||||||||| || ||||||| |||||||||||||||||||||||||    
T  359146 taaaatcaaaaacgtaaattgacacagggatgaaattaaaaaaaacggttaatcttcttcttcctctcaaattt 359073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 53 - 281
Target Start/End: Complemental strand, 21144015 - 21143778
Alignment:
Q  53 aaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaacggaacacacgtggcagt 152  Q
    |||||||||| |||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  21144015 aaaatgaaccatgtatcttcttaactttttgaaaatagtccttgtcgtcagcttctgtcaacaaaaacgtcatggtggctaacggagcacacgtggcagt 21143916  T
Q  153 t--------ggcacatttgatgagatggcatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaattgacagagggatgaaatt- 243  Q
    |        ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  21143915 ttatgagttggcacatttaatgagatggcatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaattgacacagggatgaaatta 21143816  T
Q  244 aagaaaacggctaatcttcttcttcctctcaaatttca 281  Q
    || ||||||   |||||||||||||||| ||| |||||    
T  21143815 aaaaaaacgttcaatcttcttcttcctcacaactttca 21143778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 7 - 226
Target Start/End: Original strand, 358004 - 358231
Alignment:
Q  7 agtttgcgcatttttggttttcgtccctgcaagnnnnnnnctttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagctt 106  Q
    |||| |||||||||||||||||||||||| |||        ||||||||||  ||| |||||||||| |||||||||||||| |||||||||||||||||    
T  358004 agttcgcgcatttttggttttcgtccctgtaagtttttttttttctaaaatagaccttgtatcttcttaaccttttgaaaatggtccttgccgtcagctt 358103  T
Q  107 ctgtcaacaaaaacgccatggtggctaacggaacacacgtggc--------agttggcacatttgatgagatggcatgagagatgataagttgttaaaat 198  Q
    ||||||||||||||||||  |||||||||||| |||| |||||        |||||||||||||||||||||||||||||||||||| ||||||  |||     
T  358104 ctgtcaacaaaaacgccactgtggctaacggagcacaggtggcaagttatgagttggcacatttgatgagatggcatgagagatgattagttgtgtaaag 358203  T
Q  199 acagggactaaaatcaaaaacgtaaatt 226  Q
    |||| |||||||||||||||||||||||    
T  358204 acagagactaaaatcaaaaacgtaaatt 358231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 49 - 226
Target Start/End: Original strand, 21142548 - 21142729
Alignment:
Q  49 ttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaacggaacacacgtgg 148  Q
    ||||||||| ||||||||||||||| |||||||||||||| |||||||    | ||||||||||||||||||| ||| |||||||||||| |||| ||||    
T  21142548 ttctaaaataaaccctgtatcttcttaaccttttgaaaatggtccttg----ctgcttctgtcaacaaaaacgtcattgtggctaacggagcacaggtgg 21142643  T
Q  149 c--------agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaatt 226  Q
    |        ||||| |||||||||||||||||||||||||||||| ||||||  ||| ||| ||||| |||| |||||||||||||    
T  21142644 caagtcatgagttgacacatttgatgagatggcatgagagatgattagttgtgtaaagacatggacttaaataaaaaacgtaaatt 21142729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 241
Target Start/End: Complemental strand, 37964514 - 37964438
Alignment:
Q  165 tgagatggcatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaattgacagagggatgaaa 241  Q
    |||| ||||||||||||| |||||| ||   |||||||||||||||| |||||||| ||||| ||| ||||||||||    
T  37964514 tgaggtggcatgagagatcataagtagtgttaatacagggactaaaaccaaaaacgaaaatttacatagggatgaaa 37964438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 27409956 - 27410032
Alignment:
Q  165 tgagatggcatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaattgacagagggatgaaa 241  Q
    |||| ||||||||||||| |||||| ||   |||||||||||| ||| |||||||| ||||| ||| ||||||||||    
T  27409956 tgaggtggcatgagagatcataagtagtgttaatacagggacttaaaccaaaaacgaaaatttacatagggatgaaa 27410032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 245
Target Start/End: Complemental strand, 27411110 - 27411026
Alignment:
Q  161 ttgatgagatggcatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaattgacagagggatgaaattaa 245  Q
    |||||||  |||||||||||||||||||| ||   |||||| |||||||||  ||||||  ||||| ||| ||||||||||||||    
T  27411110 ttgatgaagtggcatgagagatgataagtagtgttaatacaaggactaaaactaaaaacacaaatttacatagggatgaaattaa 27411026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 245
Target Start/End: Original strand, 37963463 - 37963547
Alignment:
Q  161 ttgatgagatggcatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaattgacagagggatgaaattaa 245  Q
    |||||||| |||||||||| ||||||||| ||   |||||| |||||||||| ||||||  ||||| | |||| |||||||||||    
T  37963463 ttgatgaggtggcatgagaaatgataagtagtgttaatacaaggactaaaataaaaaacacaaatttatagagagatgaaattaa 37963547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 121
Target Start/End: Original strand, 37963368 - 37963414
Alignment:
Q  75 aaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacg 121  Q
    |||||||||| ||| |||||||||||||| ||| |||||||||||||    
T  37963368 aaccttttgataatcgtccttgccgtcaggttccgtcaacaaaaacg 37963414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 7 - 281
Target Start/End: Complemental strand, 843553 - 843278
Alignment:
Q  7 agtttgcgcatttttggtttt-cgtccctgcaagnnnnnnnctttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagct 105  Q
    |||| |||||||||||||||| ||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  843553 agttcgcgcatttttggtttttcgtccctgcaagttttttt-tttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagct 843455  T
Q  106 tctgtcaacaaaaacgccatggtggctaacggaacacacgtggcagttggcacatttgatgagatggcatgagagatgataagttgttaaaatacaggga 205  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  843454 tctgtcaacaaaaacgccatggtggctaacggatcatacgtggcagttggcacatttgatgagatggcatgagagatgataagttgttaaaatacaggga 843355  T
Q  206 ctaaaatcaaaaacgtaaattgacagagggatgaaatt-aagaaaacggctaatcttcttcttcctctcaaatttca 281  Q
    ||||||||||||||||||||||||| |||||||||||| || ||||||| || ||||||||||||||||||||||||    
T  843354 ctaaaatcaaaaacgtaaattgacacagggatgaaattaaaaaaaacggttagtcttcttcttcctctcaaatttca 843278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 48 - 226
Target Start/End: Original strand, 842253 - 842439
Alignment:
Q  48 tttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaacggaacacacgtg 147  Q
    |||||||||| ||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||  |||||||||||| |||| |||    
T  842253 tttctaaaataaaccctgtatcttcttaaccttttgaaaatggtccttgccgttagcttctgtcaacaaaaacgccactgtggctaacggagcacaggtg 842352  T
Q  148 gc--------agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaatt 226  Q
    ||        |||||||||||||||||||||||||| ||||||||| ||||||  ||| ||||||||||||||||||||||||||||    
T  842353 gcaagttatgagttggcacatttgatgagatggcataagagatgattagttgtgtaaagacagggactaaaatcaaaaacgtaaatt 842439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 50 - 245
Target Start/End: Complemental strand, 19402111 - 19401908
Alignment:
Q  50 tctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaacggaacacacgtggc 149  Q
    |||||||| |||| |||||||||  |||||||||||||  ||||||||||||||||| |||||||||||| ||||| |||||||||||| |||| |||||    
T  19402111 tctaaaataaaccttgtatcttcataaccttttgaaaaaggtccttgccgtcagcttatgtcaacaaaaatgccattgtggctaacggagcacaggtggc 19402012  T
Q  150 ag--------ttggcacatttgatgagatggcatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaattgacagagggatgaaa 241  Q
    ||        |||||| |||||||||||||||||| |||||||| ||||||  ||||||||||||||||||||||||||||||||  || ||||||||||    
T  19402011 aggcaatgagttggcatatttgatgagatggcatgtgagatgattagttgtgtaaatacagggactaaaatcaaaaacgtaaattatcacagggatgaaa 19401912  T
Q  242 ttaa 245  Q
    ||||    
T  19401911 ttaa 19401908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 75 - 281
Target Start/End: Original strand, 12599991 - 12600204
Alignment:
Q  75 aaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaacggaacacacgtggcagtt--------ggcacatttgatg 166  Q
    ||||||||| |||  ||||||||||||| |||  |||||||||||| ||| |||| |||||||| ||||| ||||||||        |||| | ||||||    
T  12599991 aaccttttggaaaaggtccttgccgtcaactttcgtcaacaaaaacaccacggtgactaacggagcacacatggcagttcatgagttggcaaagttgatg 12600090  T
Q  167 agatggcatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaattgacagagggatgaaattaagaaaacggctaatcttcttct 266  Q
    |||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| | |||||||||||| ||||||  ||||||||||||    
T  12600091 agatggaatgagagatgataagttgttaaa-tacatggactaaaatcaaaaacgtaaattgacacatggatgaaattaaaaaaacgtttaatcttcttct 12600189  T
Q  267 tcctctcaaatttca 281  Q
    |||||| ||||||||    
T  12600190 tcctcttaaatttca 12600204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 48 - 245
Target Start/End: Complemental strand, 7800230 - 7800025
Alignment:
Q  48 tttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaacggaacacacgtg 147  Q
    |||||||||| |||| ||||| |||| || |||||| |||  || |||||| ||||||| ||| |||||||||||||| |||||||||||| |||| |||    
T  7800230 tttctaaaataaaccttgtatattcttaaacttttggaaaaggttcttgccatcagcttatgttaacaaaaacgccattgtggctaacggagcacaggtg 7800131  T
Q  148 gcag--------ttggcacatttgatgagatggcatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaattgacagagggatga 239  Q
    ||||        |||||| |||||||||| ||||||| |||||||| ||||||  ||||||||||||||||||||||||||||||||  || |||||| |    
T  7800130 gcagacaatgagttggcatatttgatgaggtggcatgcgagatgattagttgtataaatacagggactaaaatcaaaaacgtaaattaccacagggataa 7800031  T
Q  240 aattaa 245  Q
    ||||||    
T  7800030 aattaa 7800025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 49 - 245
Target Start/End: Complemental strand, 19597968 - 19597764
Alignment:
Q  49 ttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaacggaacacacgtgg 148  Q
    ||||||||  |||||||||| ||   ||||||||| |||  |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  19597968 ttctaaaacaaaccctgtattttgataaccttttggaaaaggtccttgccgtcagcttccgtcaacaaaaacgccatggtggctaacggagcacacgtgg 19597869  T
Q  149 c--------agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaattgacagagggatgaa 240  Q
    |        |||||| | | ||||||||||| |||||||||||||||||||  | | ||||||||||| ||| |||||| || || |||| |||||||||    
T  19597868 cagatcatgagttggaaaaattgatgagatgacatgagagatgataagttgggagagtacagggactagaataaaaaacatatatcgacacagggatgaa 19597769  T
Q  241 attaa 245  Q
    |||||    
T  19597768 attaa 19597764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 7 - 245
Target Start/End: Complemental strand, 11065686 - 11065439
Alignment:
Q  7 agtttgcgcatttttggttttcgtccctgcaagnnnnnnnctttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagctt 106  Q
    |||| |||||||||||||||||||||||| |||        |||||||||  |||| |||||||||  ||| |||||||||  |||||||||||||||||    
T  11065686 agttcgcgcatttttggttttcgtccctgtaagattttttttttctaaaacaaaccttgtatcttcataacattttgaaaaaggtccttgccgtcagctt 11065587  T
Q  107 ctgtcaacaaaaacgccatggtggctaacggaacacacgtggc--------agttggcaca-tttgatgagatggcatgagagatgataagttgttaaaa 197  Q
    |||| |||||||||||||| ||||||||||||  ||| |||||        |||||||| | ||||||||  ||||||| |||||||| ||||    |||    
T  11065586 ctgttaacaaaaacgccattgtggctaacggaggacaggtggcaggcaatgagttggcatattttgatgatctggcatgtgagatgattagtttggtaaa 11065487  T
Q  198 tacagggactaaaatcaaaaacgtaaattgacagagggatgaaattaa 245  Q
    ||||||||||||||||||||||| |||||  || ||||||||||||||    
T  11065486 tacagggactaaaatcaaaaacgaaaattaccacagggatgaaattaa 11065439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 48 - 179
Target Start/End: Complemental strand, 20773433 - 20773294
Alignment:
Q  48 tttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaacggaacacacgtg 147  Q
    |||||||||| |||| |||||||||| |||||||||||||| ||||||||||||| |||||||||||||||| ||||| |||||||| ||| |||| |||    
T  20773433 tttctaaaataaaccttgtatcttcttaaccttttgaaaatggtccttgccgtcaccttctgtcaacaaaaatgccattgtggctaatggagcacaggtg 20773334  T
Q  148 gc--------agttggcacatttgatgagatggcatgaga 179  Q
    ||        ||||||||||||||||||||||||||||||    
T  20773333 gcaggtcatgagttggcacatttgatgagatggcatgaga 20773294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 151
Target Start/End: Complemental strand, 30321189 - 30321053
Alignment:
Q  14 gcatttttggttttcgtccctgcaagnnnnnnnctttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagcttctgtcaa 113  Q
    |||||||||||||||||||||| |||        |||||||||  |||| |||||||||  ||| |||||||||  ||||||||||||||||||||| ||    
T  30321189 gcatttttggttttcgtccctgtaagatttttt-tttctaaaacaaaccttgtatcttcataacattttgaaaaaggtccttgccgtcagcttctgttaa 30321091  T
Q  114 caaaaacgccatggtggctaacggaacacacgtggcag 151  Q
    ||||||| |||| ||||||||||||  ||| |||||||    
T  30321090 caaaaacaccattgtggctaacggaggacaggtggcag 30321053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 151
Target Start/End: Original strand, 7796818 - 7796921
Alignment:
Q  47 ctttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaacggaacacacgt 146  Q
    ||||||||||| |||| | |||||||| || |||||| |||  |||||||| |||||||||||| |||||||||||||| ||||||||| || |||| ||    
T  7796818 ctttctaaaataaaccttttatcttcttaaacttttggaaag-gtccttgctgtcagcttctgttaacaaaaacgccattgtggctaacagagcacaggt 7796916  T
Q  147 ggcag 151  Q
    |||||    
T  7796917 ggcag 7796921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 138
Target Start/End: Original strand, 19596411 - 19596500
Alignment:
Q  49 ttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaacgga 138  Q
    ||||||||  |||||||||| ||   |||||||||||||  ||||||||| |||||||| |||||||||||||   ||||||||||||||    
T  19596411 ttctaaaacaaaccctgtattttgataaccttttgaaaaaggtccttgccatcagcttccgtcaacaaaaacgttttggtggctaacgga 19596500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 217 - 281
Target Start/End: Original strand, 20772539 - 20772603
Alignment:
Q  217 aacgtaaattgacagagggatgaaattaagaaaacggctaatcttcttcttcctctcaaatttca 281  Q
    |||||||||||||| | |||||||||||| || |||  ||||||||| |||||||||||||||||    
T  20772539 aacgtaaattgacacaaggatgaaattaaaaagacgtttaatcttctccttcctctcaaatttca 20772603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 135
Target Start/End: Original strand, 19579960 - 19580046
Alignment:
Q  49 ttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaac 135  Q
    ||||||||  |||||||||| ||   ||||||||| |||  ||||||| |||||||||| |||||||||||||   |||||||||||    
T  19579960 ttctaaaacaaaccctgtattttgataaccttttggaaaaggtccttgtcgtcagcttccgtcaacaaaaacgttttggtggctaac 19580046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 7 - 281
Target Start/End: Original strand, 24612305 - 24612578
Alignment:
Q  7 agtttgcgcatttttggttttcgtccctgcaagnnnnnnnctttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagctt 106  Q
    |||| |||||||||||||||||||| |||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24612305 agttcgcgcatttttggttttcgtctctgcaagtttttt--tttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagctt 24612402  T
Q  107 ctgtcaacaaaaacgccatggtggctaacggaacacacgtggcagttggcacatttgatgagatggcatgagagatgataagttgttaaaatacagggac 206  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  24612403 ctgtcaacaaaaacgccatggtggctaacggaacacacatggcagttggcacatttgatgagatggcatgagagatgataagttgttaaaatatagggac 24612502  T
Q  207 taaaatcaaaaacgtaaattgacagagggatgaaatt-aagaaaacggctaatcttcttcttcctctcaaatttca 281  Q
    |||||||||||||||||||||||| ||||| |||||| || ||||||| ||||||||| |||||||||||||||||    
T  24612503 taaaatcaaaaacgtaaattgacacagggacgaaattaaaaaaaacggttaatcttctccttcctctcaaatttca 24612578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 47 - 226
Target Start/End: Complemental strand, 33781486 - 33781299
Alignment:
Q  47 ctttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaacggaacacacgt 146  Q
    ||||||||||| |||| |||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||| |||| ||    
T  33781486 ctttctaaaataaaccttgtatcttcttaaccttttgaaaatggtccttgccgttagcttctgtcaacaaaaacgccattgtggctaacggagcacatgt 33781387  T
Q  147 ggc--------agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaatt 226  Q
    |||        |||||||||||||||||||||||||||||||||||| ||||||  ||| |||| ||||||||| |||||||||||||    
T  33781386 ggcaagtcatgagttggcacatttgatgagatggcatgagagatgattagttgtgtaaagacagagactaaaataaaaaacgtaaatt 33781299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 48 - 226
Target Start/End: Complemental strand, 24613604 - 24613418
Alignment:
Q  48 tttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaacggaacacacgtg 147  Q
    |||||||||| |||||| |||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||  |||||||||||| |||| |||    
T  24613604 tttctaaaataaaccctatatcttcttaaccttttgaaaatggtccttgccgttagcttctgtcaacaaaaacgccactgtggctaacggagcacaagtg 24613505  T
Q  148 gc--------agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaatt 226  Q
    ||        |||||||||||||||||||||||||||||||||||| ||||||  ||| ||| ||||||||||||||||||||||||    
T  24613504 gcaagttatgagttggcacatttgatgagatggcatgagagatgattagttgtgtaaagacaaggactaaaatcaaaaacgtaaatt 24613418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 76 - 252
Target Start/End: Original strand, 31199343 - 31199527
Alignment:
Q  76 accttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaacggaacacacgtggcag--------ttggcacatttgatga 167  Q
    ||||||||| ||  |||||||||||||| ||| |||||||||||||||||| ||||||||||| ||||||||||||        |||||| | |||||||    
T  31199343 accttttgataaaggtccttgccgtcagattccgtcaacaaaaacgccatgctggctaacggagcacacgtggcagatcatgagttggcaaagttgatga 31199442  T
Q  168 gatggcatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaattgacagagggatgaaattaagaaaacg 252  Q
    ||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  31199443 gatggaataagagatgataagttgttagaatacagggactaaaatcaaaaacgtaaattgacacagggatgaaattaaaaaaacg 31199527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 33780729 - 33780796
Alignment:
Q  47 ctttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagcttctgtcaac 114  Q
    ||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  33780729 ctttcgaaaatgaaccctgtatcttcttaaccttttaaaaatagtccttgccgtcagcttctgtcaac 33780796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 49 - 138
Target Start/End: Complemental strand, 31200936 - 31200848
Alignment:
Q  49 ttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaacgga 138  Q
    ||||||||  |||||||||| || | |||||||||||||  |||||||||||||||||| |||||||||||| |  ||||||||||||||    
T  31200936 ttctaaaacaaaccctgtattttat-aaccttttgaaaaaggtccttgccgtcagcttccgtcaacaaaaacactctggtggctaacgga 31200848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 165 - 241
Target Start/End: Complemental strand, 27320562 - 27320486
Alignment:
Q  165 tgagatggcatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaattgacagagggatgaaa 241  Q
    |||| ||||||||||||| |||||| ||   ||||||||||||||||||||||||| ||||| ||| ||||||||||    
T  27320562 tgaggtggcatgagagatcataagtagtgttaatacagggactaaaatcaaaaacgaaaatttacatagggatgaaa 27320486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 245
Target Start/End: Original strand, 27329015 - 27329096
Alignment:
Q  164 atgagatggcatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaattgacagagggatgaaattaa 245  Q
    ||||| |||||||||||||||||||| ||   |||||| ||||||||| |||||||  ||||| ||| ||||||||||||||    
T  27329015 atgaggtggcatgagagatgataagtagtgttaatacaaggactaaaaccaaaaacacaaatttacatagggatgaaattaa 27329096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 27320662 - 27320618
Alignment:
Q  75 aaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaa 119  Q
    ||||||||| |||| |||||||||||||| ||| |||||||||||    
T  27320662 aaccttttggaaatcgtccttgccgtcaggttccgtcaacaaaaa 27320618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 27362420 - 27362376
Alignment:
Q  75 aaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaa 119  Q
    |||||||||||||| || ||||||||||| ||| |||||||||||    
T  27362420 aaccttttgaaaattgtacttgccgtcagattccgtcaacaaaaa 27362376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 245
Target Start/End: Original strand, 34594458 - 34594502
Alignment:
Q  201 agggactaaaatcaaaaacgtaaattgacagagggatgaaattaa 245  Q
    ||||||||||| |||||||| ||||| ||| ||||||||||||||    
T  34594458 agggactaaaaccaaaaacggaaatttacatagggatgaaattaa 34594502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 47 - 281
Target Start/End: Complemental strand, 13241 - 12999
Alignment:
Q  47 ctttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaacggaacacacgt 146  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||    
T  13241 ctttctaaaatgaaccatgtatcttcttaaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaacggagcacaggt 13142  T
Q  147 ggcagtt--------ggcacatttgatgagatggcatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaattgacagagggatg 238  Q
    |||||||        |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  13141 ggcagttcatgagttggcacatttggtgagatggcatgagagatgataagttgttaaaatatagggactaaaatcaaaaacgtaaattgacacagggatg 13042  T
Q  239 aaattaagaaaacggctaatcttcttcttcctctcaaatttca 281  Q
    ||||||| ||||||   ||||||||||||||||||||||||||    
T  13041 aaattaaaaaaacgttcaatcttcttcttcctctcaaatttca 12999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 48 - 226
Target Start/End: Original strand, 11846 - 12032
Alignment:
Q  48 tttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaacggaacacacgtg 147  Q
    |||||||||| ||||| |||| |||| |||||||||||||| ||| ||| ||| ||||||||| |||||||||||||   ||||||||||| |||| |||    
T  11846 tttctaaaataaaccccgtattttcttaaccttttgaaaatggtcattgtcgttagcttctgtaaacaaaaacgccactatggctaacggagcacatgtg 11945  T
Q  148 gca--------gttggcacatttgatgagatggcatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaatt 226  Q
     ||        ||||||||||||||||||||||||||||||||||| ||||||  ||| ||||||||||||||||||||||||||||    
T  11946 acaagtcatgagttggcacatttgatgagatggcatgagagatgattagttgtgtaaagacagggactaaaatcaaaaacgtaaatt 12032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 163; Significance: 4e-87; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 54 - 281
Target Start/End: Original strand, 13373840 - 13374075
Alignment:
Q  54 aaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaacggaacacacgtggcagtt 153  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||    
T  13373840 aaatgaaccctgtatcttttaaaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaaccgagtacacgtggcagtt 13373939  T
Q  154 --------ggcacatttgatgagatggcatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaattgacagagggatgaaattaa 245  Q
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  13373940 catgagttggcacatttgatgagatggcatgagagatgataagttgttaaaatacagggactaaaataaaaaacgtaaattgacacagggatgaaattaa 13374039  T
Q  246 gaaaacggctaatcttcttcttcctctcaaatttca 281  Q
     ||||||   ||||||||||||||||||||||||||    
T  13374040 aaaaacgttcaatcttcttcttcctctcaaatttca 13374075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 50 - 281
Target Start/End: Original strand, 9671029 - 9671268
Alignment:
Q  50 tctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaacggaacacacgtggc 149  Q
    ||||||||||||| |||||||||| |||||||||||||||||| ||| ||||| ||||||||||  ||||||||||||||||||||||| ||||||||||    
T  9671029 tctaaaatgaaccttgtatcttcttaaccttttgaaaatagtctttgtcgtcaacttctgtcaagtaaaacgccatggtggctaacggagcacacgtggc 9671128  T
Q  150 agtt--------ggcacatttgatgagatggcatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaattgacagagggatgaaa 241  Q
    ||||        |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  9671129 agttcatgagttggcacatttgatgagatggcatgagagatgataagttgttaaaatacaaggactaaaatcaaaaacgtaaattgacacagggatgaaa 9671228  T
Q  242 ttaagaaaacggctaatcttcttcttcctctcaaatttca 281  Q
    |||| ||||||   |||||||||||||||||||| |||||    
T  9671229 ttaaaaaaacgttcaatcttcttcttcctctcaagtttca 9671268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 51 - 218
Target Start/End: Complemental strand, 9672337 - 9672162
Alignment:
Q  51 ctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaacggaacacacgtggc- 149  Q
    ||||||| ||||||||||||||| |||||||||||||| |||||||| || ||||| |||||||||||||||||   ||||||||||| |||| |||||     
T  9672337 ctaaaataaaccctgtatcttcttaaccttttgaaaatggtccttgcagttagcttatgtcaacaaaaacgccactttggctaacggagcacaggtggca 9672238  T
Q  150 -------agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacagggactaaaatcaaaaa 218  Q
           ||||||||||||||| |||||||||||||||||||| ||||||  ||| ||| ||||||||||||||||    
T  9672237 agtcatgagttggcacatttgacgagatggcatgagagatgattagttgtgtaaagacatggactaaaatcaaaaa 9672162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 51 - 224
Target Start/End: Complemental strand, 13375308 - 13375144
Alignment:
Q  51 ctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaacggaacacacgtggca 150  Q
    ||||||| ||||||| ||||||| ||||||| |||||| ||| ||| |||||||||||||||||||||||||||| |||||||||||| |||| ||||||    
T  13375308 ctaaaataaaccctgcatcttcttaacctttggaaaatggtcattgtcgtcagcttctgtcaacaaaaacgccattgtggctaacggagcacatgtggca 13375209  T
Q  151 gttggcacatttgatgagatggcatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaa 224  Q
    |          | ||||| |||||||||||||||| ||||||  ||| |||||||||||||| |||||||||||    
T  13375208 g---------gtcatgagttggcatgagagatgattagttgtgtaaagacagggactaaaataaaaaacgtaaa 13375144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 134; Significance: 8e-70; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 75 - 281
Target Start/End: Original strand, 44819863 - 44820077
Alignment:
Q  75 aaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaacggaacacacgtggca--------gttggcacatttgatg 166  Q
    ||||||||| |||  |||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||        |||| || | ||||||    
T  44819863 aaccttttggaaaaggtccttgccgtcagcttcagtcaacaaaaacgccatggtggctaacggagcacacatggcatttcatgagttgacaaagttgatg 44819962  T
Q  167 agatggcatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaattgacagagggatgaaattaagaaaacggctaatcttcttct 266  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||    
T  44819963 agatggaatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaattgacacagggatgaaattaagaaaacgtttaatcttcttct 44820062  T
Q  267 tcctctcaaatttca 281  Q
    |||||||||||||||    
T  44820063 tcctctcaaatttca 44820077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 49 - 281
Target Start/End: Complemental strand, 10345138 - 10344899
Alignment:
Q  49 ttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaacggaacacacgtgg 148  Q
    ||||||||  |||||||||| ||   ||||||||| |||  |||||||||||||||||| ||||||||||| | |||||||||||||||| |||||||||    
T  10345138 ttctaaaacaaaccctgtattttactaaccttttggaaaaggtccttgccgtcagcttccgtcaacaaaaatgtcatggtggctaacggagcacacgtgg 10345039  T
Q  149 cag--------ttggcacatttgatgagatggcatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaattgacagagggatgaa 240  Q
    |||        |||||| | |||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||    
T  10345038 cagctcatgagttggcaaagttgatgagatggaatgagagatgataagttgttaaaatacagg-actaaaataaaaaacgtaaattgacacagggatgaa 10344940  T
Q  241 attaagaaaacggctaatcttcttcttcctctcaaatttca 281  Q
    ||||| ||||||  |||||||| ||||||||||||||||||    
T  10344939 attaaaaaaacgtttaatcttcctcttcctctcaaatttca 10344899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 48 - 226
Target Start/End: Original strand, 42929000 - 42929186
Alignment:
Q  48 tttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaacggaacacacgtg 147  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||| || | |||    
T  42929000 tttctaaaataaaccctgtatcttcttaaccttttgaaaatagtccttgctgtcagcttctgtcaaaaaaaacgccatgatggctaacggagcaaaggtg 42929099  T
Q  148 gc--------agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaatt 226  Q
    ||        |||||||||||||||||||||||||||||||||||| ||||||  ||| ||||||||||||||||||||||||||||    
T  42929100 gcaagtcatgagttggcacatttgatgagatggcatgagagatgattagttgtgtaaagacagggactaaaatcaaaaacgtaaatt 42929186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 49 - 245
Target Start/End: Complemental strand, 40128918 - 40128714
Alignment:
Q  49 ttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaacggaacacacgtgg 148  Q
    ||||||||  |||||||||| ||   ||||||||| |||  ||||||||||| |||||| |||||| ||||||| ||| ||||||||||| |||||||||    
T  40128918 ttctaaaagaaaccctgtattttgataaccttttggaaaaggtccttgccgttagcttccgtcaacgaaaacgcaatgctggctaacggagcacacgtgg 40128819  T
Q  149 cag--------ttggcacatttgatgagatggcatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaattgacagagggatgaa 240  Q
    |||        |||||| | |||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  40128818 caggtcatgagttggcaaagttgatgagatggaataagagatgataagttgttaaaacacagggactaaaatcaaaaacgtaaattgacacagggatgaa 40128719  T
Q  241 attaa 245  Q
    |||||    
T  40128718 attaa 40128714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 49 - 245
Target Start/End: Original strand, 43516466 - 43516670
Alignment:
Q  49 ttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaacggaacacacgtgg 148  Q
    ||||||||  |||||||||| ||   ||||||||| |||  || ||| ||||||||||| |||||||||||||| ||| ||||||||||| |||||||||    
T  43516466 ttctaaaagaaaccctgtattttgataaccttttggaaaaggttcttaccgtcagcttccgtcaacaaaaacgcaatgctggctaacggagcacacgtgg 43516565  T
Q  149 cag--------ttggcacatttgatgagatggcatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaattgacagagggatgaa 240  Q
    |||        |||||| | |||||||||||| || |||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||    
T  43516566 caggtcatgagttggcaaagttgatgagatggaataagagatgataagttgttagaatacagggactaaaataaaaaacgtaaattgacacagggatgaa 43516665  T
Q  241 attaa 245  Q
    |||||    
T  43516666 attaa 43516670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 150 - 281
Target Start/End: Complemental strand, 42930313 - 42930184
Alignment:
Q  150 agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaattgacagagggatgaaattaagaaa 249  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||   ||||||||||| ||||||||||||||||| |||||||||||||  |||    
T  42930313 agttggcacatttgatgagatggcatgagagatgataacttgttaaaatt--gggactaaaataaaaaacgtaaattgacacagggatgaaattagaaaa 42930216  T
Q  250 acggctaatcttcttcttcctctcaaatttca 281  Q
    |||   ||||||||||||||||||||||||||    
T  42930215 acgttcaatcttcttcttcctctcaaatttca 42930184  T

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Target: chr2; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 48 - 226
Target Start/End: Complemental strand, 44820920 - 44820734
Alignment:
Q  48 tttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaacggaacacacgtg 147  Q
    |||||||||| |||| |||||||||| |||||||||||||| ||| ||||||| || ||| || |||||||||||||| || ||||||||| |||| |||    
T  44820920 tttctaaaataaaccttgtatcttcttaaccttttgaaaatggtcattgccgttagtttccgttaacaaaaacgccattgtagctaacggagcacaggtg 44820821  T
Q  148 gca--------gttggcacatttgatgagatggcatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaatt 226  Q
    | |        ||||||||||||||||||||||||||||||||||| ||||||  ||| || ||||||||||| |||||| ||||||    
T  44820820 gtaagtcatgagttggcacatttgatgagatggcatgagagatgattagttgtgcaaagacggggactaaaataaaaaacataaatt 44820734  T

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Target: chr2; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 52 - 226
Target Start/End: Original strand, 10344057 - 10344241
Alignment:
Q  52 taaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacg--ccatggtggctaacggaacacacgtggc 149  Q
    |||||| |||| |||||||||| || ||||||||||| |||||| |||||||||| |||||||||||| |  |||| |||||||||||| |||| |||||    
T  10344057 taaaataaaccttgtatcttcttaagcttttgaaaatggtccttaccgtcagcttttgtcaacaaaaatgatccattgtggctaacggagcacaggtggc 10344156  T
Q  150 ag--------ttggcacatttgatgagatggcatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaatt 226  Q
    ||        |||||||||||||||||||| |||||||||| || ||||||  ||| |||| |||||||||||||||||||||||    
T  10344157 aggtcatgagttggcacatttgatgagatgacatgagagattattagttgtgtaaagacagagactaaaatcaaaaacgtaaatt 10344241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 52 - 147
Target Start/End: Complemental strand, 42931763 - 42931668
Alignment:
Q  52 taaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaacggaacacacgtg 147  Q
    ||||||||||| |||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  || ||||||||    
T  42931763 taaaatgaaccttgtatcctcttaaccttttgaaaatagtccttgtcgtcagcttctgtcaacaaaaacgccatggtggctaagagagcacacgtg 42931668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 100 - 245
Target Start/End: Original strand, 42827436 - 42827589
Alignment:
Q  100 tcagcttctgtcaacaaaaacgccatggtggctaacggaacacacgtggcag--------ttggcacatttgatgagatggcatgagagatgataagttg 191  Q
    |||||||| |||||||||||||| |||||||||||| || ||||||||||||        |||| | | |||||||||||| ||||||||||||||||||    
T  42827436 tcagcttccgtcaacaaaaacgctatggtggctaacagagcacacgtggcaggtcatgagttggaaaaattgatgagatggtatgagagatgataagttg 42827535  T
Q  192 ttaaaatacagggactaaaatcaaaaacgtaaattgacagagggatgaaattaa 245  Q
      | | ||||||||||||||| |||||| |||||||||| ||||| ||||||||    
T  42827536 caagagtacagggactaaaataaaaaacataaattgacacagggaagaaattaa 42827589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 7 - 148
Target Start/End: Original strand, 22054361 - 22054501
Alignment:
Q  7 agtttgcgcatttttggttttcgtccctgcaagnnnnnnnctttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagctt 106  Q
    |||| |||||||||||||||||||||||| |||        |||||||||  |||| |||||||||  ||| |||||||||  |||||||||||||||||    
T  22054361 agttcgcgcatttttggttttcgtccctgtaagatttttt-tttctaaaacaaaccttgtatcttcataacattttgaaaaaggtccttgccgtcagctt 22054459  T
Q  107 ctgtcaacaaaaacgccatggtggctaacggaacacacgtgg 148  Q
    |||| |||||||||||||| |||||||||||| |||| ||||    
T  22054460 ctgttaacaaaaacgccattgtggctaacggagcacaggtgg 22054501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 7 - 151
Target Start/End: Complemental strand, 22060192 - 22060049
Alignment:
Q  7 agtttgcgcatttttggttttcgtccctgcaagnnnnnnnctttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagctt 106  Q
    |||| |||||||||||||||||||||||| |||        |||||||||  |||| |||||||||  ||| |||||||||  |||||||||||||||||    
T  22060192 agttcgcgcatttttggttttcgtccctgtaagatttttt-tttctaaaacaaaccttgtatcttcataacattttgaaaaaggtccttgccgtcagctt 22060094  T
Q  107 ctgtcaacaaaaacgccatggtggctaacggaacacacgtggcag 151  Q
    |||| ||||||||||| || |||||||||| | |||| |||||||    
T  22060093 ctgttaacaaaaacgcaattgtggctaacgaagcacaggtggcag 22060049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 245
Target Start/End: Complemental strand, 22060000 - 22059950
Alignment:
Q  195 aaatacagggactaaaatcaaaaacgtaaattgacagagggatgaaattaa 245  Q
    |||||||||||||||||||||||| |||||||  || ||||||||||||||    
T  22060000 aaatacagggactaaaatcaaaaatgtaaattaccacagggatgaaattaa 22059950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 135
Target Start/End: Complemental strand, 43518068 - 43517982
Alignment:
Q  49 ttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaac 135  Q
    ||||||||  |||||||||| ||   |||||||||||||  ||| |||||||||||||| ||||| ||||||||  |||||||||||    
T  43518068 ttctaaaacaaaccctgtattttgataaccttttgaaaaaggtcattgccgtcagcttccgtcaataaaaacgctttggtggctaac 43517982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 138
Target Start/End: Original strand, 40127308 - 40127397
Alignment:
Q  49 ttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaacgga 138  Q
    ||||||||  |||||||||| ||   || ||||||||||  |||||| |||||| |||| ||||| ||||||||  ||||||||||||||    
T  40127308 ttctaaaacaaaccctgtattttgataatcttttgaaaaaggtccttaccgtcaacttccgtcaataaaaacgctttggtggctaacgga 40127397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 250
Target Start/End: Original strand, 40127443 - 40127492
Alignment:
Q  201 agggactaaaatcaaaaacgtaaattgacagagggatgaaattaagaaaa 250  Q
    ||||||||||| |||||||| ||||||||| ||||||||| |||| ||||    
T  40127443 agggactaaaaccaaaaacgaaaattgacatagggatgaatttaaaaaaa 40127492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 250
Target Start/End: Complemental strand, 43517928 - 43517879
Alignment:
Q  201 agggactaaaatcaaaaacgtaaattgacagagggatgaaattaagaaaa 250  Q
    ||||||||||| |||||||| ||||||||| ||||||||| |||| ||||    
T  43517928 agggactaaaaccaaaaacgaaaattgacatagggatgaatttaaaaaaa 43517879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 6e-40; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 49 - 245
Target Start/End: Original strand, 41591583 - 41591787
Alignment:
Q  49 ttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaacggaacacacgtgg 148  Q
    ||||||||  |||||||||| ||   ||||||||| |||  ||| ||| ||| |||||| |||||||||||||| ||| ||||||||||| |||||||||    
T  41591583 ttctaaaagaaaccctgtattttgataaccttttggaaaaggtcattgtcgttagcttccgtcaacaaaaacgcaatgctggctaacggagcacacgtgg 41591682  T
Q  149 cag--------ttggcacatttgatgagatggcatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaattgacagagggatgaa 240  Q
    |||        |||||| | |||||||||||| || |||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||    
T  41591683 cagatcatgagttggcaaagttgatgagatggaataagagatgataagttgttagaacacagggactaaaatcaaaaacgtaaattgacacagggatgaa 41591782  T
Q  241 attaa 245  Q
    |||||    
T  41591783 attaa 41591787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 75 - 245
Target Start/End: Complemental strand, 41385772 - 41385594
Alignment:
Q  75 aaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaacggaacacacgtggcag--------ttggcacatttgatg 166  Q
    ||||||||| |||  |||||||||||||||||| ||||||||||| | |||||||||||||||| | ||||||||||        |||| | | ||||||    
T  41385772 aaccttttggaaaaggtccttgccgtcagcttccgtcaacaaaaatgtcatggtggctaacggagcccacgtggcaggtcatgagttggaaaaattgatg 41385673  T
Q  167 agatggcatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaattgacagagggatgaaattaa 245  Q
    ||||  |||||||||||||||||||| | | |||  |||||||||| |||||| |||||||||| ||||||||||||||    
T  41385672 agataacatgagagatgataagttgtgagagtactaggactaaaataaaaaacataaattgacacagggatgaaattaa 41385594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 49 - 138
Target Start/End: Complemental strand, 41593194 - 41593105
Alignment:
Q  49 ttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaacgga 138  Q
    ||||||||  |||||||||| ||   |||||||||||||  |||||||||||||||||| ||||| ||||||||  ||||||||||||||    
T  41593194 ttctaaaacaaaccctgtattttgataaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacgga 41593105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 250
Target Start/End: Complemental strand, 41593054 - 41593005
Alignment:
Q  201 agggactaaaatcaaaaacgtaaattgacagagggatgaaattaagaaaa 250  Q
    ||||||||||| |||||||| ||||||||| |||||||||||||| ||||    
T  41593054 agggactaaaaccaaaaacgaaaattgacatagggatgaaattaaaaaaa 41593005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 250
Target Start/End: Original strand, 41384357 - 41384406
Alignment:
Q  201 agggactaaaatcaaaaacgtaaattgacagagggatgaaattaagaaaa 250  Q
    ||||||||||| |||||||| ||||||||| ||||||||| |||| ||||    
T  41384357 agggactaaaaccaaaaacgaaaattgacatagggatgaatttaaaaaaa 41384406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 252
Target Start/End: Complemental strand, 39788024 - 39787948
Alignment:
Q  176 gagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaattgacagagggatgaaattaagaaaacg 252  Q
    ||||||||| |||| |||| |||  |||||| |||| |||||||||||||   || |||||||||||||| ||||||    
T  39788024 gagagatgacaagtggttagaatggagggaccaaaaccaaaaacgtaaatgtgcacagggatgaaattaaaaaaacg 39787948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 245
Target Start/End: Complemental strand, 4289 - 4044
Alignment:
Q  7 agtttgcgcatttttggttttcgtccctgcaagnnnnnnnctttctaaaatgaaccctgtatcttctcaaccttttgaaaatagtccttgccgtcagctt 106  Q
    |||| |||||||||||||||||||||||| |||        |||||||||  |||| |||||||||  ||| |||||||||  |||||||||||||||||    
T  4289 agttcgcgcatttttggttttcgtccctgtaagattttt--tttctaaaacaaaccttgtatcttcataacattttgaaaaaggtccttgccgtcagctt 4192  T
Q  107 ctgtcaacaaaaacgccatggtggctaacggaacacacgtggc--------agttggcaca-tttgatgagatggcatgagagatgataagttgttaaaa 197  Q
    |||| |||||||||||||| ||||||||||||  ||| |||||        ||||| || | ||||||||  ||||||| |||||||| ||||    |||    
T  4191 ctgttaacaaaaacgccattgtggctaacggaggacaggtggcaggcaatgagttgtcatattttgatgatctggcatgcgagatgattagtttggtaaa 4092  T
Q  198 tacagggactaaaatcaaaaacgtaaattgacagagggatgaaattaa 245  Q
    |||||||||||||||||||||||  ||||  || | ||||||||||||    
T  4091 tacagggactaaaatcaaaaacgacaattaccacaaggatgaaattaa 4044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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