View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4795-Insertion-18 (Length: 238)
Name: NF4795-Insertion-18
Description: NF4795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4795-Insertion-18 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 8 - 193
Target Start/End: Original strand, 33028112 - 33028297
Alignment:
| Q |
8 |
tagaattcatcttccaataacaaattaagtctcctttgttcaagttgtcatgtcttccatgatgaggattacaagtccaaaatatggcactttacatatt |
107 |
Q |
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| T |
33028112 |
tagaattcatcttccaataacaaattaagtctcctttgttcaagttgtcatgtcttccatgatgaggattacaagtccaaaatatggcactttacatatt |
33028211 |
T |
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| Q |
108 |
cagtatatcatttctttggtcacattccttgtggaaacttcaatatttgaaagcataaatgatgtttctagttctgtcaatagttg |
193 |
Q |
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| T |
33028212 |
cagtatatcatttctttggtcacattccttgtggaaacttcaatattttaaagcataaatggtgtttctagttctgtcaatagttg |
33028297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 8 - 228
Target Start/End: Original strand, 33021803 - 33022020
Alignment:
| Q |
8 |
tagaattcatcttccaataacaaattaagtctcctttgttcaagttgtcatgtcttccatgatgaggattacaagtccaaaatatggcactttacatatt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||| |||||||||||||| || |
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| T |
33021803 |
tagaattcatcttccaataacaaattaagtctcctttgttcaagttgtactgtcttccatgatga---ttacaagtaaaaaaaatggcactttacatctt |
33021899 |
T |
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| Q |
108 |
cagtatatcatttctttggtcacattccttgtggaaacttcaatatttgaaagcataaatgatgtttctagttctgtcaatagttgatatatatatagac |
207 |
Q |
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|||||| | |||||||| | |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| || |||||||||||| ||| |
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| T |
33021900 |
cagtatgtaatttctttttttacattccttgtggaaacttcaatatttgaaagcataaatggtgtttttagttctgtcaaaaggtgatatatatattgac |
33021999 |
T |
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| Q |
208 |
aaatatatgtgctttcacagt |
228 |
Q |
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| T |
33022000 |
aaatatatgtgctttcgcagt |
33022020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 8 - 134
Target Start/End: Original strand, 33039433 - 33039560
Alignment:
| Q |
8 |
tagaattcatcttccaataacaaattaagtctcctttgttcaagttgtcatgtcttccatgatgaggattacaagtcc-aaaatatggcactttacatat |
106 |
Q |
| |
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|||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||| | ||||||||||||||||| |||| ||||||||||||| || |
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| T |
33039433 |
tagaattcatcttctaataacaaatttagtctcctttgttcaagttgtcctgtcttccctaatgaggattacaagtccaaaaaaatggcactttacaaat |
33039532 |
T |
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| Q |
107 |
tcagtatatcatttctttggtcacattc |
134 |
Q |
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||||||| |||||||||||||||||||| |
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| T |
33039533 |
tcagtatgtcatttctttggtcacattc |
33039560 |
T |
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