View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4795-Insertion-2 (Length: 910)
Name: NF4795-Insertion-2
Description: NF4795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4795-Insertion-2 |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 326 - 810
Target Start/End: Complemental strand, 9562588 - 9562100
Alignment:
| Q |
326 |
attcaaactatcaacaaaccactttttcgtggaagtttatgtttggatttgtctttgtataaatttaatttaatatctggttttaaaatattactgtatg |
425 |
Q |
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| T |
9562588 |
attcaaactataaacaaaccactttttcgtggaagtttatgtttggatttgtcttggtataaatttaatttaatatctggttttaaaatattactgtatg |
9562489 |
T |
|
| Q |
426 |
attttaaaatgtaaaaacttacatacatcacaatcatgaatgttatgtgtgattttttactataaaagtcaaaacatttttaatcattataattgagata |
525 |
Q |
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| T |
9562488 |
attttaaaatgtaaaaacttacatacatcacaatcatcaatgttatgtgtgattttttacgataaaagtgaaa-catttttaatcattataattgaggtg |
9562390 |
T |
|
| Q |
526 |
gattctagggtgagggtt----taaattcatcactggtataccactcgttttaaccattagattaaattagtctataggaaatcattagtcgttgccaca |
621 |
Q |
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| T |
9562389 |
gattctatagtgatggttcaattaaattcatcaccggtataccactcgttttaaccattagattaaattagtctataggaaatcattagtcgttgccaca |
9562290 |
T |
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| Q |
622 |
ctcgatcgttatgttcaaaagcattaaataattaacgagtcattctctctctaaattatcttaccttctctctaagaaaacatatccactgcctttctca |
721 |
Q |
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| T |
9562289 |
ctcgatcgttatgttcaaaagcattaaataattaatgagtccttctctctctaaactatcctaccttctctctaagaaaacatatccaccgcctttctca |
9562190 |
T |
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| Q |
722 |
aatccttaccccttgctatccaaattcgtgtttcttcatcatgtagacattagacttgtggtgatgtgatgat-ggtgaaagccacccgc |
810 |
Q |
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| T |
9562189 |
aatcctttcccctttctatccaaattcgtgttttttcatcatgtagacatcagacttgtggtgatgcgatggtcggtgatagccacccgc |
9562100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 67 - 266
Target Start/End: Complemental strand, 9562846 - 9562647
Alignment:
| Q |
67 |
ttctgtcacagaacacagcatgtaactgaacaacctctcacctgtgttcagagtctgagcctgaggtatgttccgttccaacactttggtttgtttaagg |
166 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
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| T |
9562846 |
ttctgtcacagaatacagcatgtaactgaacaacctctcacctgtgttcagagtctgagcctgaggtatgttccgttccaacactttggcttgtttaaag |
9562747 |
T |
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| Q |
167 |
tttcatgaatttgtgttgttgtctgtgggccctgaatatatagcatgtgttcatgtttgaattcttatgttatatgctcaaacattttgtgtcaatgtag |
266 |
Q |
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| T |
9562746 |
tttcatgaatttgtgttgttgtctgtgggccctgaatatatagcatgttttcatgtttgaattcttatgttataggctcaaacaatttgtgtcaatgtag |
9562647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 68 - 266
Target Start/End: Complemental strand, 9570942 - 9570747
Alignment:
| Q |
68 |
tctgtcacagaacacagcatgtaactgaacaacctctcacctgtgttcagagtctgagcctgaggtatgttccgttccaacactttggtttgtttaaggt |
167 |
Q |
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|||| ||||||||||| ||| |||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
9570942 |
tctgccacagaacacaacatttaactgaacaacctctca---gtgttcagagtctgatactgaggtatgttctgttccaacactttggtttgtttaaggt |
9570846 |
T |
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| Q |
168 |
ttcatgaatttgtgttgttgtctgtgggccctgaatatatagcatgtgttcatgtttgaattcttatgttatatgctcaaacattttgtgtcaatgtag |
266 |
Q |
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| T |
9570845 |
ttcatgaatttgtgttgttgtctgtgggccctgaatatatagcatgtgttcatgtttgaattcttatgttataggctcaaacaatttgtgtcaaggtag |
9570747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 326 - 498
Target Start/End: Complemental strand, 9570682 - 9570515
Alignment:
| Q |
326 |
attcaaactatcaacaaaccactttttcgtggaagtttatgtttggatttgtctttgtataaatttaatttaatatctggttttaaaatattactgtatg |
425 |
Q |
| |
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||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
9570682 |
attcaaactataaataaaccactttttcgtggaagtttatgtttggatttgtcttggtataaatttaatttaatatctggttttaaaatat-----tatg |
9570588 |
T |
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| Q |
426 |
attttaaaatgtaaaaacttacatacatcacaatcatgaatgttatgtgtgattttttactataaaagtcaaa |
498 |
Q |
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| T |
9570587 |
attttaaagtgtaaaaacttacatacatcacaatcatcaatgttgtgtgtgactttttacgataaaagtcaaa |
9570515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 841 - 910
Target Start/End: Complemental strand, 9562102 - 9562032
Alignment:
| Q |
841 |
cgccggtggttt-ggtggatgt-gttgtttgcggtttgctgtcatggggttggctggcgctatttcatctct |
910 |
Q |
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| T |
9562102 |
cgccggtggttttggtggttgttgttgtttgcggtt-gctgtcatggtgttggttggcgctatttcatctct |
9562032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 561 - 624
Target Start/End: Complemental strand, 36540036 - 36539973
Alignment:
| Q |
561 |
taccactcgttttaaccattagattaaattagtctataggaaatcattagtcgttgccacactc |
624 |
Q |
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| T |
36540036 |
taccactcttttttaccattagattaaattggtctatagcatatcattagacattgccacactc |
36539973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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