View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4795-Insertion-3 (Length: 880)
Name: NF4795-Insertion-3
Description: NF4795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4795-Insertion-3 |
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Alignment Details
Target: chr3 (Bit Score: 407; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 7 - 413
Target Start/End: Complemental strand, 52593878 - 52593472
Alignment:
| Q |
7 |
agattattgaatgcttaatggtttaaagttggtgtttaagaagggttacaagtcacaggtccaccaactggtggttagcctttgaacccttaatttcaag |
106 |
Q |
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| T |
52593878 |
agattattgaatgcttaatggtttaaagttggtgtttaagaagggttacaagtcacaggtccaccaactggtggttagcctttgaacccttaatttcaag |
52593779 |
T |
|
| Q |
107 |
caagcaacacaacccacacacacgctttcccacacgtgataaacttaataatgattggcgcttaaatttaccaattatttattcctttttaccaataaat |
206 |
Q |
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| T |
52593778 |
caagcaacacaacccacacacacgctttcccacacgtgataaacttaataatgattggcgcttaaatttaccaattatttattcctttttaccaataaat |
52593679 |
T |
|
| Q |
207 |
aactagcagtagtagttggtgttaagcaagtaaaggagttaatattatttaattggttggtaccgttcttccaatgataaggtggtcggtctttcttttt |
306 |
Q |
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| T |
52593678 |
aactagcagtagtagttggtgttaagcaagtaaaggagttaatattatttaattggttggtaccgttcttccaatgataaggtggtcggtctttcttttt |
52593579 |
T |
|
| Q |
307 |
gtttgaaattaaaaacatatactctctgttgttggagttgccatttgtctctccttccttcttcaaactggattcataattctctattgcacctctgctt |
406 |
Q |
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| T |
52593578 |
gtttgaaattaaaaacatatactctctgttgttggagttgccatttgtctctccttccttcttcaaactggattcataattctctattgcacctctgctt |
52593479 |
T |
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| Q |
407 |
gctctgg |
413 |
Q |
| |
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| T |
52593478 |
gctctgg |
52593472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 640 - 869
Target Start/End: Complemental strand, 52593254 - 52593027
Alignment:
| Q |
640 |
atttcatgactagtaaaaaagttgaatgttgccaaggttactatgactgtttctaactttagaatcgatgtatgtatgtatgtaatgagtgttggattat |
739 |
Q |
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| T |
52593254 |
atttcatgactagtaaaaa-gttgaatgttgccaaggttactatgactgtttctaactttagaatcgatgtatgtat--atgtaatgagtgttggattat |
52593158 |
T |
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| Q |
740 |
ttgttctattcttgattgattagggattccctgttttagcaaattttttacattagttttctcaacaaatataaatcacatttagacagggaaactatgt |
839 |
Q |
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| T |
52593157 |
ttgttctattcttgattgattagggattccctgttttagcaaattttttacattagttttctcaacaaatataaatcacatttagacagggaaactatgt |
52593058 |
T |
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| Q |
840 |
tctgcacacgtggag-tgatggttttctggc |
869 |
Q |
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| T |
52593057 |
tctgcacacgtggagttgatggttttctggc |
52593027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 472 - 609
Target Start/End: Complemental strand, 52593420 - 52593283
Alignment:
| Q |
472 |
aatcatgaggcagtagtatgtctctctttattttgtcctttttaaaaaagtctgtgatcatgaaatgattatgatggggtagtagtatattatttgtgcg |
571 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
52593420 |
aatcatgaggcagtagtatgtctctctttattttgtcctttttaaaaaagtctgtgatcatgaaatgattatgatggggtagtagtatattgtttgtgcg |
52593321 |
T |
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| Q |
572 |
tgatagaaggtaatctctttgtaataataatacatgag |
609 |
Q |
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| T |
52593320 |
tgatagaaggtaatctctttgtaataataatacatgag |
52593283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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